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Volumn 112, Issue 34, 2015, Pages 10691-10696

Structures of two bacterial resistance factors mediating tRNA-dependent aminoacylation of phosphatidylglycerol with lysine or alanine

Author keywords

A PGS; L PGS; MprF; Structure; TRNA

Indexed keywords

ALANINE; AMINOACYL TRANSFER RNA; LYSINE; PHOSPHATIDYLGLYCEROL; ALANINE TRANSFER RNA; ALANYL-PHOSPHATIDYLGLYCEROL SYNTHASE, PSEUDOMONAS AERUGINOSA; AMINOACYLTRANSFERASE; BACTERIAL PROTEIN; HYBRID PROTEIN; LYSINE TRANSFER RNA; LYSYLPHOSPHATIDYLGLYCEROL;

EID: 84940478041     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1511167112     Document Type: Article
Times cited : (32)

References (48)
  • 1
    • 39149115737 scopus 로고    scopus 로고
    • Membrane lipid homeostasis in bacteria
    • Zhang YM, Rock CO (2008) Membrane lipid homeostasis in bacteria. Nat Rev Microbiol 6(3):222-233.
    • (2008) Nat Rev Microbiol , vol.6 , Issue.3 , pp. 222-233
    • Zhang, Y.M.1    Rock, C.O.2
  • 2
    • 84857981317 scopus 로고    scopus 로고
    • Resistance phenotypes mediated by aminoacyl-phosphatidylglycerol synthases
    • Arendt W, Hebecker S, Jäger S, Nimtz M, Moser J (2012) Resistance phenotypes mediated by aminoacyl-phosphatidylglycerol synthases. J Bacteriol 194(6):1401-1416.
    • (2012) J Bacteriol , vol.194 , Issue.6 , pp. 1401-1416
    • Arendt, W.1    Hebecker, S.2    Jäger, S.3    Nimtz, M.4    Moser, J.5
  • 3
    • 0035821289 scopus 로고    scopus 로고
    • Staphylococcus aureus resistance to human defensins and evasion of neutrophil killing via the novel virulence factor MprF is based on modification of membrane lipids with l-lysine
    • Peschel A, et al. (2001) Staphylococcus aureus resistance to human defensins and evasion of neutrophil killing via the novel virulence factor MprF is based on modification of membrane lipids with l-lysine. J Exp Med 193(9):1067-1076.
    • (2001) J Exp Med , vol.193 , Issue.9 , pp. 1067-1076
    • Peschel, A.1
  • 4
    • 70350417474 scopus 로고    scopus 로고
    • Broad range amino acid specificity of RNA-dependent lipid remodeling by multiple peptide resistance factors
    • Roy H, Ibba M (2009) Broad range amino acid specificity of RNA-dependent lipid remodeling by multiple peptide resistance factors. J Biol Chem 284(43):29677-29683.
    • (2009) J Biol Chem , vol.284 , Issue.43 , pp. 29677-29683
    • Roy, H.1    Ibba, M.2
  • 5
    • 58449113932 scopus 로고    scopus 로고
    • Adaptation of Pseudomonas aeruginosa to various conditions includes tRNA-dependent formation of alanyl-phosphatidylglycerol
    • Klein S, et al. (2009) Adaptation of Pseudomonas aeruginosa to various conditions includes tRNA-dependent formation of alanyl-phosphatidylglycerol. Mol Microbiol 71(3):551-565.
    • (2009) Mol Microbiol , vol.71 , Issue.3 , pp. 551-565
    • Klein, S.1
  • 6
    • 34250189880 scopus 로고    scopus 로고
    • Daptomycin nonsusceptibility in Staphylococcus aureus with reduced vancomycin susceptibility is independent of alterations in MprF
    • Pillai SK, et al. (2007) Daptomycin nonsusceptibility in Staphylococcus aureus with reduced vancomycin susceptibility is independent of alterations in MprF. Antimicrob Agents Chemother 51(6):2223-2225.
    • (2007) Antimicrob Agents Chemother , vol.51 , Issue.6 , pp. 2223-2225
    • Pillai, S.K.1
  • 7
    • 70349909844 scopus 로고    scopus 로고
    • Development of reduced vancomycin susceptibility in methicillin-susceptible Staphylococcus aureus
    • Pillai SK, et al. (2009) Development of reduced vancomycin susceptibility in methicillin-susceptible Staphylococcus aureus. Clin Infect Dis 49(8):1169-1174.
    • (2009) Clin Infect Dis , vol.49 , Issue.8 , pp. 1169-1174
    • Pillai, S.K.1
  • 8
    • 0036532403 scopus 로고    scopus 로고
    • How do bacteria resist human antimicrobial peptides?
    • Peschel A (2002) How do bacteria resist human antimicrobial peptides? Trends Microbiol 10(4):179-186.
    • (2002) Trends Microbiol , vol.10 , Issue.4 , pp. 179-186
    • Peschel, A.1
  • 9
    • 0037218495 scopus 로고    scopus 로고
    • MprF-mediated lysinylation of phospholipids in Staphylococcus aureus leads to protection against oxygen-independent neutrophil killing
    • Kristian SA, Dürr M, Van Strijp JA, Neumeister B, Peschel A (2003) MprF-mediated lysinylation of phospholipids in Staphylococcus aureus leads to protection against oxygen-independent neutrophil killing. Infect Immun 71(1):546-549.
    • (2003) Infect Immun , vol.71 , Issue.1 , pp. 546-549
    • Kristian, S.A.1    Dürr, M.2    Van Strijp, J.A.3    Neumeister, B.4    Peschel, A.5
  • 10
    • 0346103648 scopus 로고    scopus 로고
    • Abnormal surface liquid pH regulation by cultured cystic fibrosis bronchial epithelium
    • Coakley RD, et al. (2003) Abnormal surface liquid pH regulation by cultured cystic fibrosis bronchial epithelium. Proc Natl Acad Sci USA 100(26):16083-16088.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.26 , pp. 16083-16088
    • Coakley, R.D.1
  • 11
    • 0028574251 scopus 로고
    • Analysis of pH, pO2 and pCO2 in drainage fluid allows for rapid detection of infectious complications during the follow-up period after abdominal surgery
    • Simmen HP, Battaglia H, Giovanoli P, Blaser J (1994) Analysis of pH, pO2 and pCO2 in drainage fluid allows for rapid detection of infectious complications during the follow-up period after abdominal surgery. Infection 22(6):386-389.
    • (1994) Infection , vol.22 , Issue.6 , pp. 386-389
    • Simmen, H.P.1    Battaglia, H.2    Giovanoli, P.3    Blaser, J.4
  • 12
    • 60849121077 scopus 로고    scopus 로고
    • The Bacillus anthracis protein MprF is required for synthesis of lysylphosphatidylglycerols and for resistance to cationic antimicrobial peptides
    • Samant S, Hsu FF, Neyfakh AA, Lee H (2009) The Bacillus anthracis protein MprF is required for synthesis of lysylphosphatidylglycerols and for resistance to cationic antimicrobial peptides. J Bacteriol 191(4):1311-1319.
    • (2009) J Bacteriol , vol.191 , Issue.4 , pp. 1311-1319
    • Samant, S.1    Hsu, F.F.2    Neyfakh, A.A.3    Lee, H.4
  • 13
    • 84883159992 scopus 로고    scopus 로고
    • Identification and characterization of a periplasmic aminoacyl-phosphatidylglycerol hydrolase responsible for Pseudomonas aeruginosa lipid homeostasis
    • Arendt W, Groenewold MK, Hebecker S, Dickschat JS, Moser J (2013) Identification and characterization of a periplasmic aminoacyl-phosphatidylglycerol hydrolase responsible for Pseudomonas aeruginosa lipid homeostasis. J Biol Chem 288(34): 24717-24730.
    • (2013) J Biol Chem , vol.288 , Issue.34 , pp. 24717-24730
    • Arendt, W.1    Groenewold, M.K.2    Hebecker, S.3    Dickschat, J.S.4    Moser, J.5
  • 14
    • 84881250125 scopus 로고    scopus 로고
    • A conserved hydrolase responsible for the cleavage of aminoacylphosphatidylglycerol in the membrane of Enterococcus faecium
    • Smith AM, Harrison JS, Sprague KM, Roy H (2013) A conserved hydrolase responsible for the cleavage of aminoacylphosphatidylglycerol in the membrane of Enterococcus faecium. J Biol Chem 288(31):22768-22776.
    • (2013) J Biol Chem , vol.288 , Issue.31 , pp. 22768-22776
    • Smith, A.M.1    Harrison, J.S.2    Sprague, K.M.3    Roy, H.4
  • 15
    • 79955733954 scopus 로고    scopus 로고
    • Alanyl-phosphatidylglycerol synthase: Mechanism of substrate recognition during tRNA-dependent lipid modification in Pseudomonas aeruginosa
    • Hebecker S, et al. (2011) Alanyl-phosphatidylglycerol synthase: Mechanism of substrate recognition during tRNA-dependent lipid modification in Pseudomonas aeruginosa. Mol Microbiol 80(4):935-950.
    • (2011) Mol Microbiol , vol.80 , Issue.4 , pp. 935-950
    • Hebecker, S.1
  • 16
    • 73549084991 scopus 로고    scopus 로고
    • The bacterial defensin resistance protein MprF consists of separable domains for lipid lysinylation and antimicrobial peptide repulsion
    • Ernst CM, et al. (2009) The bacterial defensin resistance protein MprF consists of separable domains for lipid lysinylation and antimicrobial peptide repulsion. PLoS Pathog 5(11):e1000660.
    • (2009) PLoS Pathog , vol.5 , Issue.11 , pp. e1000660
    • Ernst, C.M.1
  • 18
    • 9744255506 scopus 로고    scopus 로고
    • Structure and functions of the GNAT superfamily of acetyltransferases
    • Vetting MW, et al. (2005) Structure and functions of the GNAT superfamily of acetyltransferases. Arch Biochem Biophys 433(1):212-226.
    • (2005) Arch Biochem Biophys , vol.433 , Issue.1 , pp. 212-226
    • Vetting, M.W.1
  • 19
    • 77954288774 scopus 로고    scopus 로고
    • Dali server: Conservation mapping in 3D
    • (Web Server issue)
    • Holm L, Rosenstrom P (2010) Dali server: Conservation mapping in 3D. Nucleic Acids Res 38(Web Server issue):W545-549.
    • (2010) Nucleic Acids Res , vol.38 , pp. 545-549
    • Holm, L.1    Rosenstrom, P.2
  • 20
    • 84880170595 scopus 로고    scopus 로고
    • The structure of FemX(Wv) in complex with a peptidyl-RNA conjugate: Mechanism of aminoacyl transfer from Ala-tRNA(Ala) to peptidoglycan precursors
    • Fonvielle M, et al. (2013) The structure of FemX(Wv) in complex with a peptidyl-RNA conjugate: Mechanism of aminoacyl transfer from Ala-tRNA(Ala) to peptidoglycan precursors. Angew Chem Int Ed Engl 52(28):7278-7281.
    • (2013) Angew Chem Int Ed Engl , vol.52 , Issue.28 , pp. 7278-7281
    • Fonvielle, M.1
  • 21
    • 1242283845 scopus 로고    scopus 로고
    • Crystal structures of Weissella viridescens FemX and its complex with UDP-MurNAc-pentapeptide: Insights into FemABX family substrates recognition
    • Biarrotte-Sorin S, et al. (2004) Crystal structures of Weissella viridescens FemX and its complex with UDP-MurNAc-pentapeptide: Insights into FemABX family substrates recognition. Structure 12(2):257-267.
    • (2004) Structure , vol.12 , Issue.2 , pp. 257-267
    • Biarrotte-Sorin, S.1
  • 22
    • 0036849261 scopus 로고    scopus 로고
    • Aminoacyl-tRNA synthetases: Versatile players in the changing theater of translation
    • Francklyn C, Perona JJ, Puetz J, Hou YM (2002) Aminoacyl-tRNA synthetases: Versatile players in the changing theater of translation. RNA 8(11):1363-1372.
    • (2002) RNA , vol.8 , Issue.11 , pp. 1363-1372
    • Francklyn, C.1    Perona, J.J.2    Puetz, J.3    Hou, Y.M.4
  • 23
    • 55849145559 scopus 로고    scopus 로고
    • DNA polymerases and aminoacyl-tRNA synthetases: Shared mechanisms for ensuring the fidelity of gene expression
    • Francklyn CS (2008) DNA polymerases and aminoacyl-tRNA synthetases: Shared mechanisms for ensuring the fidelity of gene expression. Biochemistry 47(45): 11695-11703.
    • (2008) Biochemistry , vol.47 , Issue.45 , pp. 11695-11703
    • Francklyn, C.S.1
  • 24
    • 0014694198 scopus 로고
    • The extractable lipids of Pseudomonas aeruginosa
    • Hancock IC, Meadow PM (1969) The extractable lipids of Pseudomonas aeruginosa. Biochim Biophys Acta 187(3):366-379.
    • (1969) Biochim Biophys Acta , vol.187 , Issue.3 , pp. 366-379
    • Hancock, I.C.1    Meadow, P.M.2
  • 25
    • 34547566008 scopus 로고    scopus 로고
    • Toward rational protein crystallization: A Web server for the design of crystallizable protein variants
    • Goldschmidt L, Cooper DR, Derewenda ZS, Eisenberg D (2007) Toward rational protein crystallization: A Web server for the design of crystallizable protein variants. Protein Sci 16(8):1569-1576.
    • (2007) Protein Sci , vol.16 , Issue.8 , pp. 1569-1576
    • Goldschmidt, L.1    Cooper, D.R.2    Derewenda, Z.S.3    Eisenberg, D.4
  • 26
    • 82355181066 scopus 로고    scopus 로고
    • Optimized procedure to generate heavy isotope and selenomethionine-labeled proteins for structure determination using Escherichia colibased expression systems
    • Li Z, Nimtz M, Rinas U (2011) Optimized procedure to generate heavy isotope and selenomethionine-labeled proteins for structure determination using Escherichia colibased expression systems. Appl Microbiol Biotechnol 92(4):823-833.
    • (2011) Appl Microbiol Biotechnol , vol.92 , Issue.4 , pp. 823-833
    • Li, Z.1    Nimtz, M.2    Rinas, U.3
  • 27
    • 84860129612 scopus 로고    scopus 로고
    • Facilities for macromolecular crystallography at the Helmholtz-Zentrum Berlin
    • Mueller U, et al. (2012) Facilities for macromolecular crystallography at the Helmholtz-Zentrum Berlin. J Synchrotron Radiat 19(Pt 3):442-449.
    • (2012) J Synchrotron Radiat , vol.19 , pp. 442-449
    • Mueller, U.1
  • 28
    • 84888182357 scopus 로고    scopus 로고
    • Development of an in-vacuum x-ray microscope with cryogenic sample cooling for beamline P11 at PETRA III
    • Meents A, et al. (2013) Development of an in-vacuum x-ray microscope with cryogenic sample cooling for beamline P11 at PETRA III. Proc SPIE 8851:88510K (abstr).
    • (2013) Proc SPIE 8851:88510K (Abstr)
    • Meents, A.1
  • 30
    • 76449098262 scopus 로고    scopus 로고
    • PHENIX: A comprehensive Python-based system for macromolecular structure solution
    • Adams PD, et al. (2010) PHENIX: A comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66(Pt 2):213-221.
    • (2010) Acta Crystallogr D Biol Crystallogr , vol.66 , pp. 213-221
    • Adams, P.D.1
  • 32
    • 33744459472 scopus 로고    scopus 로고
    • Toward the structural genomics of complexes: Crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis
    • Strong M, et al. (2006) Toward the structural genomics of complexes: Crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis. Proc Natl Acad Sci USA 103(21):8060-8065.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.21 , pp. 8060-8065
    • Strong, M.1
  • 33
    • 34447508216 scopus 로고    scopus 로고
    • Phaser crystallographic software
    • McCoy AJ, et al. (2007) Phaser crystallographic software. J Appl Cryst 40(Pt 4):658-674.
    • (2007) J Appl Cryst , vol.40 , pp. 658-674
    • McCoy, A.J.1
  • 34
    • 84864712808 scopus 로고    scopus 로고
    • Phenix.mr-rosetta: Molecular replacement and model rebuilding with Phenix and Rosetta
    • Terwilliger TC, et al. (2012) phenix.mr-rosetta: Molecular replacement and model rebuilding with Phenix and Rosetta. J Struct Funct Genomics 13(2):81-90.
    • (2012) J Struct Funct Genomics , vol.13 , Issue.2 , pp. 81-90
    • Terwilliger, T.C.1
  • 35
    • 0031447172 scopus 로고    scopus 로고
    • Archaeal-type lysyl-tRNA synthetase in the Lyme disease spirochete Borrelia burgdorferi
    • Ibba M, Bono JL, Rosa PA, Söll D (1997) Archaeal-type lysyl-tRNA synthetase in the Lyme disease spirochete Borrelia burgdorferi. Proc Natl Acad Sci USA 94(26):14383-14388.
    • (1997) Proc Natl Acad Sci USA , vol.94 , Issue.26 , pp. 14383-14388
    • Ibba, M.1    Bono, J.L.2    Rosa, P.A.3    Söll, D.4
  • 36
    • 18144415863 scopus 로고    scopus 로고
    • Transfer RNA recognition by class i lysyl-tRNA synthetase from the Lyme disease pathogen Borrelia burgdorferi
    • Ambrogelly A, Frugier M, Ibba M, Söll D, Giegé R (2005) Transfer RNA recognition by class I lysyl-tRNA synthetase from the Lyme disease pathogen Borrelia burgdorferi. FEBS Lett 579(12):2629-2634.
    • (2005) FEBS Lett , vol.579 , Issue.12 , pp. 2629-2634
    • Ambrogelly, A.1    Frugier, M.2    Ibba, M.3    Söll, D.4    Giegé, R.5
  • 37
    • 0024284965 scopus 로고
    • A simple structural feature is a major determinant of the identity of a transfer RNA
    • Hou YM, Schimmel P (1988) A simple structural feature is a major determinant of the identity of a transfer RNA. Nature 333(6169):140-145.
    • (1988) Nature , vol.333 , Issue.6169 , pp. 140-145
    • Hou, Y.M.1    Schimmel, P.2
  • 38
    • 4444221565 scopus 로고    scopus 로고
    • UCSF Chimera-a visualization system for exploratory research and analysis
    • Pettersen EF, et al. (2004) UCSF Chimera-a visualization system for exploratory research and analysis. J Comput Chem 25(13):1605-1612.
    • (2004) J Comput Chem , vol.25 , Issue.13 , pp. 1605-1612
    • Pettersen, E.F.1
  • 39
    • 84863276609 scopus 로고    scopus 로고
    • UCSF Chimera, MODELLER, and IMP: An integrated modeling system
    • Yang Z, et al. (2012) UCSF Chimera, MODELLER, and IMP: An integrated modeling system. J Struct Biol 179(3):269-278.
    • (2012) J Struct Biol , vol.179 , Issue.3 , pp. 269-278
    • Yang, Z.1
  • 41
    • 76149120388 scopus 로고    scopus 로고
    • AutoDock Vina Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
    • Trott O, Olson AJ (2010) AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J Comput Chem 31(2):455-461.
    • (2010) J Comput Chem , vol.31 , Issue.2 , pp. 455-461
    • Trott, O.1    Olson, A.J.2
  • 42
    • 0041318860 scopus 로고    scopus 로고
    • Insights into the respiratory electron transfer pathway from the structure of nitrate reductase A
    • Bertero MG, et al. (2003) Insights into the respiratory electron transfer pathway from the structure of nitrate reductase A. Nat Struct Biol 10(9):681-687.
    • (2003) Nat Struct Biol , vol.10 , Issue.9 , pp. 681-687
    • Bertero, M.G.1
  • 43
    • 0028922586 scopus 로고
    • LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
    • Wallace AC, Laskowski RA, Thornton JM (1995) LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions. Protein Eng 8(2):127-134.
    • (1995) Protein Eng , vol.8 , Issue.2 , pp. 127-134
    • Wallace, A.C.1    Laskowski, R.A.2    Thornton, J.M.3
  • 44
    • 80054078476 scopus 로고    scopus 로고
    • Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
    • Sievers F, et al. (2011) Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7:539.
    • (2011) Mol Syst Biol , vol.7 , pp. 539
    • Sievers, F.1
  • 46
    • 0024959463 scopus 로고
    • Aminoacylation of RNA minihelices with alanine
    • Francklyn C, Schimmel P (1989) Aminoacylation of RNA minihelices with alanine. Nature 337(6206):478-481.
    • (1989) Nature , vol.337 , Issue.6206 , pp. 478-481
    • Francklyn, C.1    Schimmel, P.2
  • 47
    • 0026603736 scopus 로고
    • In vitro study of E.coli tRNA(Arg) and tRNA(Lys) identity elements
    • Tamura K, Himeno H, Asahara H, Hasegawa T, Shimizu M (1992) In vitro study of E. coli tRNA(Arg) and tRNA(Lys) identity elements. Nucleic Acids Res 20(9):2335-2339.
    • (1992) Nucleic Acids Res , vol.20 , Issue.9 , pp. 2335-2339
    • Tamura, K.1    Himeno, H.2    Asahara, H.3    Hasegawa, T.4    Shimizu, M.5
  • 48
    • 84861425552 scopus 로고    scopus 로고
    • Linking crystallographic model and data quality
    • Karplus PA, Diederichs K (2012) Linking crystallographic model and data quality. Science 336(6084):1030-1033.
    • (2012) Science , vol.336 , Issue.6084 , pp. 1030-1033
    • Karplus, P.A.1    Diederichs, K.2


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