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Volumn 112, Issue 33, 2015, Pages 10365-10370

Identification of a functional hotspot on ubiquitin required for stimulation of methyltransferase activity on chromatin

Author keywords

Chromatin; Dot1L; Epigenetics; Protein chemistry; Ubiquitin

Indexed keywords

ARGININE; DISULFIDE; DOT1 PROTEIN; EPITOPE; HISTONE H2B; HISTONE H3; METHYLTRANSFERASE; UBIQUITIN; UNCLASSIFIED DRUG; CHROMATIN; DOT1L PROTEIN, HUMAN; HISTONE; LYSINE; NUCLEOSOME; PROTEIN BINDING;

EID: 84940181324     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1504483112     Document Type: Article
Times cited : (47)

References (40)
  • 1
    • 84875149194 scopus 로고    scopus 로고
    • Regulation of nucleosome dynamics by histone modifications
    • Zentner GE, Henikoff S (2013) Regulation of nucleosome dynamics by histone modifications. Nat Struct Mol Biol 20(3):259-266.
    • (2013) Nat Struct Mol Biol , vol.20 , Issue.3 , pp. 259-266
    • Zentner, G.E.1    Henikoff, S.2
  • 2
    • 53549124960 scopus 로고    scopus 로고
    • The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure
    • Lu X, et al. (2008) The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure. Nat Struct Mol Biol 15(10):1122-1124.
    • (2008) Nat Struct Mol Biol , vol.15 , Issue.10 , pp. 1122-1124
    • Lu, X.1
  • 3
    • 84878944044 scopus 로고    scopus 로고
    • Readout of epigenetic modifications
    • Patel DJ, Wang Z (2013) Readout of epigenetic modifications. Annu Rev Biochem 82:81-118.
    • (2013) Annu Rev Biochem , vol.82 , pp. 81-118
    • Patel, D.J.1    Wang, Z.2
  • 4
    • 80052942443 scopus 로고    scopus 로고
    • Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification
    • Tan M, et al. (2011) Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. Cell 146(6):1016-1028.
    • (2011) Cell , vol.146 , Issue.6 , pp. 1016-1028
    • Tan, M.1
  • 5
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides T (2007) Chromatin modifications and their function. Cell 128(4):693-705.
    • (2007) Cell , vol.128 , Issue.4 , pp. 693-705
    • Kouzarides, T.1
  • 6
    • 43149122898 scopus 로고    scopus 로고
    • Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells
    • Minsky N, et al. (2008) Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells. Nat Cell Biol 10(4):483-488.
    • (2008) Nat Cell Biol , vol.10 , Issue.4 , pp. 483-488
    • Minsky, N.1
  • 7
    • 84861843882 scopus 로고    scopus 로고
    • H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon-intron structure in human cells
    • Jung I, et al. (2012) H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon-intron structure in human cells. Genome Res 22(6):1026-1035.
    • (2012) Genome Res , vol.22 , Issue.6 , pp. 1026-1035
    • Jung, I.1
  • 8
    • 79960954206 scopus 로고    scopus 로고
    • Histone crosstalk directed by H2B ubiquitination is required for chromatin boundary integrity
    • Ma MK, Heath C, Hair A, West AG (2011) Histone crosstalk directed by H2B ubiquitination is required for chromatin boundary integrity. PLoS Genet 7(7):e1002175.
    • (2011) PLoS Genet , vol.7 , Issue.7 , pp. e1002175
    • Ma, M.K.1    Heath, C.2    Hair, A.3    West, A.G.4
  • 9
    • 80455162312 scopus 로고    scopus 로고
    • Genome-wide function of H2B ubiquitylation in promoter and genic regions
    • Batta K, Zhang Z, Yen K, Goffman DB, Pugh BF (2011) Genome-wide function of H2B ubiquitylation in promoter and genic regions. Genes Dev 25(21):2254-2265.
    • (2011) Genes Dev , vol.25 , Issue.21 , pp. 2254-2265
    • Batta, K.1    Zhang, Z.2    Yen, K.3    Goffman, D.B.4    Pugh, B.F.5
  • 10
    • 44849100496 scopus 로고    scopus 로고
    • Chemically ubiquitylated histone H2B stimulates hDot1L-mediated intranucleosomal methylation
    • McGinty RK, Kim J, Chatterjee C, Roeder RG, Muir TW (2008) Chemically ubiquitylated histone H2B stimulates hDot1L-mediated intranucleosomal methylation. Nature 453(7196):812-816.
    • (2008) Nature , vol.453 , Issue.7196 , pp. 812-816
    • McGinty, R.K.1    Kim, J.2    Chatterjee, C.3    Roeder, R.G.4    Muir, T.W.5
  • 11
    • 70349731733 scopus 로고    scopus 로고
    • Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability
    • Chandrasekharan MB, Huang F, Sun ZW (2009) Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability. Proc Natl Acad Sci USA 106(39):16686-16691.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.39 , pp. 16686-16691
    • Chandrasekharan, M.B.1    Huang, F.2    Sun, Z.W.3
  • 12
    • 0037144393 scopus 로고    scopus 로고
    • Ubiquitination of histone H2B by Rad6 is required for efficient Dot1-mediated methylation of histone H3 lysine 79
    • Ng HH, Xu RM, Zhang Y, Struhl K (2002) Ubiquitination of histone H2B by Rad6 is required for efficient Dot1-mediated methylation of histone H3 lysine 79. J Biol Chem 277(38):34655-34657.
    • (2002) J Biol Chem , vol.277 , Issue.38 , pp. 34655-34657
    • Ng, H.H.1    Xu, R.M.2    Zhang, Y.3    Struhl, K.4
  • 13
    • 65249105512 scopus 로고    scopus 로고
    • RAD6-mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells
    • Kim J, et al. (2009) RAD6-mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells. Cell 137(3):459-471.
    • (2009) Cell , vol.137 , Issue.3 , pp. 459-471
    • Kim, J.1
  • 14
    • 34548232365 scopus 로고    scopus 로고
    • Inference of macromolecular assemblies from crystalline state
    • Krissinel E, Henrick K (2007) Inference of macromolecular assemblies from crystalline state. J Mol Biol 372(3):774-797.
    • (2007) J Mol Biol , vol.372 , Issue.3 , pp. 774-797
    • Krissinel, E.1    Henrick, K.2
  • 16
    • 84879888213 scopus 로고    scopus 로고
    • 53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark
    • Fradet-Turcotte A, et al. (2013) 53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark. Nature 499(7456):50-54.
    • (2013) Nature , vol.499 , Issue.7456 , pp. 50-54
    • Fradet-Turcotte, A.1
  • 17
    • 77953108542 scopus 로고    scopus 로고
    • The diversity of ubiquitin recognition: Hot spots and varied specificity
    • Winget JM, Mayor T (2010) The diversity of ubiquitin recognition: Hot spots and varied specificity. Mol Cell 38(5):627-635.
    • (2010) Mol Cell , vol.38 , Issue.5 , pp. 627-635
    • Winget, J.M.1    Mayor, T.2
  • 18
    • 45849131354 scopus 로고    scopus 로고
    • Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution
    • Lange OF, et al. (2008) Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution. Science 320(5882):1471-1475.
    • (2008) Science , vol.320 , Issue.5882 , pp. 1471-1475
    • Lange, O.F.1
  • 19
    • 79959493965 scopus 로고    scopus 로고
    • DOT1L, the H3K79 methyltransferase, is required for MLL-AF9-mediated leukemogenesis
    • Nguyen AT, Taranova O, He J, Zhang Y (2011) DOT1L, the H3K79 methyltransferase, is required for MLL-AF9-mediated leukemogenesis. Blood 117(25):6912-6922.
    • (2011) Blood , vol.117 , Issue.25 , pp. 6912-6922
    • Nguyen, A.T.1    Taranova, O.2    He, J.3    Zhang, Y.4
  • 20
    • 84875537133 scopus 로고    scopus 로고
    • Epigenetic reprogramming in cancer
    • Suvà ML, Riggi N, Bernstein BE (2013) Epigenetic reprogramming in cancer. Science 339(6127):1567-1570.
    • (2013) Science , vol.339 , Issue.6127 , pp. 1567-1570
    • Suvà, M.L.1    Riggi, N.2    Bernstein, B.E.3
  • 21
    • 17444375685 scopus 로고    scopus 로고
    • hDOT1L links histone methylation to leukemogenesis
    • Okada Y, et al. (2005) hDOT1L links histone methylation to leukemogenesis. Cell 121(2):167-178.
    • (2005) Cell , vol.121 , Issue.2 , pp. 167-178
    • Okada, Y.1
  • 22
    • 77956267115 scopus 로고    scopus 로고
    • A lysine-rich region in Dot1p is crucial for direct interaction with H2B ubiquitylation and high level methylation of H3K79
    • Oh S, Jeong K, Kim H, Kwon CS, Lee D (2010) A lysine-rich region in Dot1p is crucial for direct interaction with H2B ubiquitylation and high level methylation of H3K79. Biochem Biophys Res Commun 399(4):512-517.
    • (2010) Biochem Biophys Res Commun , vol.399 , Issue.4 , pp. 512-517
    • Oh, S.1    Jeong, K.2    Kim, H.3    Kwon, C.S.4    Lee, D.5
  • 23
    • 77949874828 scopus 로고    scopus 로고
    • Disulfide-directed histone ubiquitylation reveals plasticity in hDot1L activation
    • Chatterjee C, McGinty RK, Fierz B, Muir TW (2010) Disulfide-directed histone ubiquitylation reveals plasticity in hDot1L activation. Nat Chem Biol 6(4):267-269.
    • (2010) Nat Chem Biol , vol.6 , Issue.4 , pp. 267-269
    • Chatterjee, C.1    McGinty, R.K.2    Fierz, B.3    Muir, T.W.4
  • 24
    • 73449105394 scopus 로고    scopus 로고
    • Structure-activity analysis of semisynthetic nucleosomes: Mechanistic insights into the stimulation of Dot1L by ubiquitylated histone H2B
    • McGinty RK, et al. (2009) Structure-activity analysis of semisynthetic nucleosomes: Mechanistic insights into the stimulation of Dot1L by ubiquitylated histone H2B. ACS Chem Biol 4(11):958-968.
    • (2009) ACS Chem Biol , vol.4 , Issue.11 , pp. 958-968
    • McGinty, R.K.1
  • 25
    • 78751515133 scopus 로고    scopus 로고
    • Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction
    • Fierz B, et al. (2011) Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction. Nat Chem Biol 7(2):113-119.
    • (2011) Nat Chem Biol , vol.7 , Issue.2 , pp. 113-119
    • Fierz, B.1
  • 26
    • 84928552345 scopus 로고    scopus 로고
    • Chemical tagging and customizing of cellular chromatin states using ultrafast trans-splicing inteins
    • David Y, Vila-Perelló M, Verma S, Muir TW (2015) Chemical tagging and customizing of cellular chromatin states using ultrafast trans-splicing inteins. Nat Chem 7(5):394-402.
    • (2015) Nat Chem , vol.7 , Issue.5 , pp. 394-402
    • David, Y.1    Vila-Perelló, M.2    Verma, S.3    Muir, T.W.4
  • 27
    • 84880816458 scopus 로고    scopus 로고
    • Convergent chemical synthesis of histone H2B protein for the site-specific ubiquitination at Lys34
    • Siman P, Karthikeyan SV, Nikolov M, Fischle W, Brik A (2013) Convergent chemical synthesis of histone H2B protein for the site-specific ubiquitination at Lys34. Angew Chem Int Ed Engl 52(31):8059-8063.
    • (2013) Angew Chem Int Ed Engl , vol.52 , Issue.31 , pp. 8059-8063
    • Siman, P.1    Karthikeyan, S.V.2    Nikolov, M.3    Fischle, W.4    Brik, A.5
  • 29
    • 77949875253 scopus 로고    scopus 로고
    • Chemically ubiquitylated PCNA as a probe for eukaryotic translesion DNA synthesis
    • Chen J, Ai Y, Wang J, Haracska L, Zhuang Z (2010) Chemically ubiquitylated PCNA as a probe for eukaryotic translesion DNA synthesis. Nat Chem Biol 6(4):270-272.
    • (2010) Nat Chem Biol , vol.6 , Issue.4 , pp. 270-272
    • Chen, J.1    Ai, Y.2    Wang, J.3    Haracska, L.4    Zhuang, Z.5
  • 30
  • 31
    • 29144518532 scopus 로고    scopus 로고
    • The ubiquitin domain superfold: Structure-based sequence alignments and characterization of binding epitopes
    • Kiel C, Serrano L (2006) The ubiquitin domain superfold: Structure-based sequence alignments and characterization of binding epitopes. J Mol Biol 355(4):821-844.
    • (2006) J Mol Biol , vol.355 , Issue.4 , pp. 821-844
    • Kiel, C.1    Serrano, L.2
  • 32
    • 84908116435 scopus 로고    scopus 로고
    • Flexibility in crosstalk between H2B ubiquitination and H3 methylation in vivo
    • Vlaming H, et al. (2014) Flexibility in crosstalk between H2B ubiquitination and H3 methylation in vivo. EMBO Rep 15(10):1077-1084.
    • (2014) EMBO Rep , vol.15 , Issue.10 , pp. 1077-1084
    • Vlaming, H.1
  • 33
    • 84880534096 scopus 로고    scopus 로고
    • SET1 and p300 act synergistically, through coupled histone modifications, in transcriptional activation by p53
    • Tang Z, et al. (2013) SET1 and p300 act synergistically, through coupled histone modifications, in transcriptional activation by p53. Cell 154(2):297-310.
    • (2013) Cell , vol.154 , Issue.2 , pp. 297-310
    • Tang, Z.1
  • 34
    • 84875771630 scopus 로고    scopus 로고
    • The n-SET domain of Set1 regulates H2B ubiquitylation-dependent H3K4 methylation
    • Kim J, et al. (2013) The n-SET domain of Set1 regulates H2B ubiquitylation-dependent H3K4 methylation. Mol Cell 49(6):1121-1133.
    • (2013) Mol Cell , vol.49 , Issue.6 , pp. 1121-1133
    • Kim, J.1
  • 35
    • 40849106789 scopus 로고    scopus 로고
    • Histone ubiquitination: Triggering gene activity
    • Weake VM, Workman JL (2008) Histone ubiquitination: Triggering gene activity. Mol Cell 29(6):653-663.
    • (2008) Mol Cell , vol.29 , Issue.6 , pp. 653-663
    • Weake, V.M.1    Workman, J.L.2
  • 36
    • 84856887479 scopus 로고    scopus 로고
    • Conversion of cysteine into dehydroalanine enables access to synthetic histones bearing diverse post-translational modifications
    • Chalker JM, Lercher L, Rose NR, Schofield CJ, Davis BG (2012) Conversion of cysteine into dehydroalanine enables access to synthetic histones bearing diverse post-translational modifications. Angew Chem Int Ed Engl 51(8):1835-1839.
    • (2012) Angew Chem Int Ed Engl , vol.51 , Issue.8 , pp. 1835-1839
    • Chalker, J.M.1    Lercher, L.2    Rose, N.R.3    Schofield, C.J.4    Davis, B.G.5
  • 37
    • 84860319353 scopus 로고    scopus 로고
    • Forging isopeptide bonds using thiol-ene chemistry: Site-specific coupling of ubiquitin molecules for studying the activity of isopeptidases
    • Valkevich EM, et al. (2012) Forging isopeptide bonds using thiol-ene chemistry: Site-specific coupling of ubiquitin molecules for studying the activity of isopeptidases. J Am Chem Soc 134(16):6916-6919.
    • (2012) J Am Chem Soc , vol.134 , Issue.16 , pp. 6916-6919
    • Valkevich, E.M.1
  • 38
    • 80053557477 scopus 로고    scopus 로고
    • A direct method for site-specific protein acetylation
    • Li F, et al. (2011) A direct method for site-specific protein acetylation. Angew Chem Int Ed Engl 50(41):9611-9614.
    • (2011) Angew Chem Int Ed Engl , vol.50 , Issue.41 , pp. 9611-9614
    • Li, F.1
  • 39
    • 69949148388 scopus 로고    scopus 로고
    • Protein methyltransferases as a target class for drug discovery
    • Copeland RA, Solomon ME, Richon VM (2009) Protein methyltransferases as a target class for drug discovery. Nat Rev Drug Discov 8(9):724-732.
    • (2009) Nat Rev Drug Discov , vol.8 , Issue.9 , pp. 724-732
    • Copeland, R.A.1    Solomon, M.E.2    Richon, V.M.3
  • 40
    • 84875803318 scopus 로고    scopus 로고
    • ASH2L regulates ubiquitylation signaling to MLL: Trans-regulation of H3 K4 methylation in higher eukaryotes
    • Wu L, et al. (2013) ASH2L regulates ubiquitylation signaling to MLL: Trans-regulation of H3 K4 methylation in higher eukaryotes. Mol Cell 49(6):1108-1120.
    • (2013) Mol Cell , vol.49 , Issue.6 , pp. 1108-1120
    • Wu, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.