메뉴 건너뛰기




Volumn 19, Issue 5, 2015, Pages 736-744

Identification of genes and pathways associated with osteoarthritis by bioinformatics analyses

Author keywords

Differentially expressed genes; Molecular mechanism; Osteoarthritis; Pathway enrichment analysis

Indexed keywords

CYTOKINE; CYTOKINE RECEPTOR; EARLY GROWTH RESPONSE FACTOR 1; FAS LIGAND; GAMMA INTERFERON; HISTONE H3; PLATELET DERIVED GROWTH FACTOR BETA RECEPTOR; RNA POLYMERASE II; T LYMPHOCYTE RECEPTOR;

EID: 84940040485     PISSN: 11283602     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (26)

References (42)
  • 1
    • 84884222395 scopus 로고    scopus 로고
    • Expression profiling based on graph-clustering approach to determine osteoarthritis related pathway
    • ZHANG B, XIE QG, QUAN Y, PAN XM. Expression profiling based on graph-clustering approach to determine osteoarthritis related pathway. Eur Rev Med Pharmacol Sci 2013;17:2097-2102.
    • (2013) Eur Rev Med Pharmacol Sci , vol.17 , pp. 2097-2102
    • Zhang, B.1    Xie, Q.G.2    Quan, Y.3    Pan, X.M.4
  • 2
    • 84897002208 scopus 로고    scopus 로고
    • Interaction relationships of osteoarthritis and rheumatoid arthritis related genes
    • ZHANG Q, CHENG B, YANG CX, GE HA. Interaction relationships of osteoarthritis and rheumatoid arthritis related genes. Eur Rev Med Pharmacol Sci 2014;18:179-184.
    • (2014) Eur Rev Med Pharmacol Sci , vol.18 , pp. 179-184
    • Zhang, Q.1    Cheng, B.2    Yang, C.X.3    Ge, H.A.4
  • 3
    • 33644641181 scopus 로고    scopus 로고
    • Healthrelated quality of life in older adults with symptomatic hip and knee osteoarthritis: A comparison with matched healthy controls
    • SALAFFI F, CAROTTI M, STANCATI A, GRASSI W. Healthrelated quality of life in older adults with symptomatic hip and knee osteoarthritis: a comparison with matched healthy controls. Aging Clin Exp Res 2005;17:255-263.
    • (2005) Aging Clin Exp Res , vol.17 , pp. 255-263
    • Salaffi, F.1    Carotti, M.2    Stancati, A.3    Grassi, W.4
  • 4
    • 0034304209 scopus 로고    scopus 로고
    • The increasing impact of arthritis on public health
    • ELDERS MJ. The increasing impact of arthritis on public health. J Rheumatol Supplement 2000;60:6-8.
    • (2000) J Rheumatol Supplement , vol.60 , pp. 6-8
    • Elders, M.J.1
  • 5
    • 33344467770 scopus 로고    scopus 로고
    • Osteoarthritis of the knee
    • FELSON DT. Osteoarthritis of the knee. N Engl J Med 2006;354:841-848.
    • (2006) N Engl J Med , vol.354 , pp. 841-848
    • Felson, D.T.1
  • 7
    • 0024338070 scopus 로고
    • Insulin-like growth factor 1 can decrease degradation and promote synthesis of proteoglycan in cartilage exposed to cytokines
    • TYLER JA. Insulin-like growth factor 1 can decrease degradation and promote synthesis of proteoglycan in cartilage exposed to cytokines. Biochem J 1989;260:543-548.
    • (1989) Biochem J , vol.260 , pp. 543-548
    • Tyler, J.A.1
  • 8
    • 0030943690 scopus 로고    scopus 로고
    • Temporal pattern of cysteine endopeptidase (cathepsin B) expression in cartilage and synovium from rabbit knees with experimental osteoarthritis: Gene expression in chondrocytes in response to interleukin-1 and matrix depletion
    • MEHRABAN F, TINDAL MH, PROFFITT MM, MOSKOWITZ RW. Temporal pattern of cysteine endopeptidase (cathepsin B) expression in cartilage and synovium from rabbit knees with experimental osteoarthritis: gene expression in chondrocytes in response to interleukin-1 and matrix depletion. Ann Rheum Dis 1997;56:108-115.
    • (1997) Ann Rheum Dis , vol.56 , pp. 108-115
    • Mehraban, F.1    Tindal, M.H.2    Proffitt, M.M.3    Moskowitz, R.W.4
  • 9
    • 0026701977 scopus 로고
    • The interglobular domain of cartilage aggrecan is cleaved by PUMP, gelatinases, and cathepsin B
    • FOSANG AJ, NEAME PJ, LAST K, HARDINGHAM TE, MURPHY G, HAMILTON JA. The interglobular domain of cartilage aggrecan is cleaved by PUMP, gelatinases, and cathepsin B. J Biol Chem 1992;267:19470-19474.
    • (1992) J Biol Chem , vol.267 , pp. 19470-19474
    • Fosang, A.J.1    Neame, P.J.2    Last, K.3    Hardingham, T.E.4    Murphy, G.5    Hamilton, J.A.6
  • 10
    • 84896996773 scopus 로고    scopus 로고
    • Genes relevant with osteoarthritis by comparison gene expression profiles of synovial membrane of osteoarthritis patients at different stages
    • MA CH, LV Q, CAO Y, WANG Q, ZHOU XK, YE BW, YI CQ. Genes relevant with osteoarthritis by comparison gene expression profiles of synovial membrane of osteoarthritis patients at different stages. Eur Rev Med Pharmacol Sci 2014;18:431-439.
    • (2014) Eur Rev Med Pharmacol Sci , vol.18 , pp. 431-439
    • Ma, C.H.1    Lv, Q.2    Cao, Y.3    Wang, Q.4    Zhou, X.K.5    Ye, B.W.6    Yi, C.Q.7
  • 11
    • 84941054675 scopus 로고    scopus 로고
    • Exploring the osteoarthritisrelated genes by gene expression analysis
    • RAO ZT, WANG SQ, WANG JQ. Exploring the osteoarthritisrelated genes by gene expression analysis. Eur Rev Med Pharmacol Sci 2014;18:3056-3062.
    • (2014) Eur Rev Med Pharmacol Sci , vol.18 , pp. 3056-3062
    • Rao, Z.T.1    Wang, S.Q.2    Wang, J.Q.3
  • 14
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • BENJAMINI Y, HOCHBERG Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol 1995;289-300.
    • (1995) J R Stat Soc Series B Stat Methodol , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 16
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • KANEHISA M, GOTO S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000;28:27-30.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 17
    • 41349115432 scopus 로고    scopus 로고
    • The DAVID Gene Functional Classification Tool: A novel biological module-centric algorithm to functionally analyze large gene lists
    • ALVORD G, ROAYAEI J, STEPHENS R, BASELER MW, LANE HC, LEMPICKI RA. The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists. Genome Biol 2007;8:R183.
    • (2007) Genome Biol , vol.8 , pp. R183
    • Alvord, G.1    Roayaei, J.2    Stephens, R.3    Baseler, M.W.4    Lane, H.C.5    Lempicki, R.A.6
  • 19
    • 33745712594 scopus 로고    scopus 로고
    • Why do hubs tend to be essential in protein networks?
    • HE X, ZHANG J. Why do hubs tend to be essential in protein networks? PLoS Genet 2006;2:e88.
    • (2006) PLoS Genet , vol.2 , pp. e88
    • He, X.1    Zhang, J.2
  • 20
    • 0031280063 scopus 로고    scopus 로고
    • Osteoarthritis of the knee
    • CREAMER P, HOCHBERG MC. Osteoarthritis of the knee. Lancet 1997;350:1328.
    • (1997) Lancet , vol.350 , pp. 1328
    • Creamer, P.1    Hochberg, M.C.2
  • 21
    • 0034564348 scopus 로고    scopus 로고
    • Osteoarthritis and cartilage: The role of cytokines
    • GOLDRING MB. Osteoarthritis and cartilage: the role of cytokines. Curr Rheumatol Rep 2000;2:459-465.
    • (2000) Curr Rheumatol Rep , vol.2 , pp. 459-465
    • Goldring, M.B.1
  • 22
    • 34249720998 scopus 로고    scopus 로고
    • Cytokines in the pathogenesis of rheumatoid arthritis
    • MCINNES IB, SCHETT G. Cytokines in the pathogenesis of rheumatoid arthritis. Nat Rev Immunol 2007;7:429-442.
    • (2007) Nat Rev Immunol , vol.7 , pp. 429-442
    • Mcinnes, I.B.1    Schett, G.2
  • 24
    • 0142243109 scopus 로고    scopus 로고
    • Roles of PDGF in animal development
    • HOCH RV, SORIANO P. Roles of PDGF in animal development. Development 2003;130:4769-4784.
    • (2003) Development , vol.130 , pp. 4769-4784
    • Hoch, R.V.1    Soriano, P.2
  • 25
    • 0023853499 scopus 로고
    • Expression of platelet-derived growth factor receptors is induced on connective tissue cells during chronic synovial inflammation
    • RUBIN K, TERRACIO L, RONNSTRAND L, HELDIN CH, KLARESKOG L. Expression of platelet-derived growth factor receptors is induced on connective tissue cells during chronic synovial inflammation. Scand J Immunol 1988;27:285-294.
    • (1988) Scand J Immunol , vol.27 , pp. 285-294
    • Rubin, K.1    Terracio, L.2    Ronnstrand, L.3    Heldin, C.H.4    Klareskog, L.5
  • 26
    • 0026099688 scopus 로고
    • Production of platelet derived growth factor B chain (PDGFB/c-sis) mRNA and immunoreactive PDGF Blike polypeptide by rheumatoid synovium: Coexpression with heparin binding acidic fibroblast growth factor-1
    • REMMERS E, SANO H, LAFYATIS R, CASE J, KUMKUMIAN G, HLA T, MACIAG T, WILDER R. Production of platelet derived growth factor B chain (PDGFB/c-sis) mRNA and immunoreactive PDGF Blike polypeptide by rheumatoid synovium: coexpression with heparin binding acidic fibroblast growth factor-1. J Rheumatol 1991;18:7-13.
    • (1991) J Rheumatol , vol.18 , pp. 7-13
    • Remmers, E.1    Sano, H.2    Lafyatis, R.3    Case, J.4    Kumkumian, G.5    Hla, T.6    Maciag, T.7    Wilder, R.8
  • 28
    • 0026752620 scopus 로고
    • The importance of the T cell in initiating and maintaining the chronic synovitis of rheumatoid arthritis
    • PANAYI G, LANCHBURY J, KINGSLEY G. The importance of the T cell in initiating and maintaining the chronic synovitis of rheumatoid arthritis. Arthritis Rheum 1992;35:729-735.
    • (1992) Arthritis Rheum , vol.35 , pp. 729-735
    • Panayi, G.1    Lanchbury, J.2    Kingsley, G.3
  • 30
    • 0026526513 scopus 로고
    • Accumulation of multiple T cell clonotypes in the synovial lesions of patients with rheumatoid arthritis revealed by a novel clonality analysis
    • YAMAMOTO K, SAKODA H, NAKAJIMA T, KATO T, OKUBO M, DOHI M, MIZUSHIMA Y, ITO K, NISHIOKA K. Accumulation of multiple T cell clonotypes in the synovial lesions of patients with rheumatoid arthritis revealed by a novel clonality analysis. Int Immunol 1992;4:1219-1223.
    • (1992) Int Immunol , vol.4 , pp. 1219-1223
    • Yamamoto, K.1    Sakoda, H.2    Nakajima, T.3    Kato, T.4    Okubo, M.5    Dohi, M.6    Mizushima, Y.7    Ito, K.8    Nishioka, K.9
  • 31
    • 0028610612 scopus 로고
    • T-cell antigen receptors in rheumatoid arthritis
    • SAKKAS LI, CHEN P-F, PLATSOUCAS CD. T-cell antigen receptors in rheumatoid arthritis. Immunol Res 1994;13:117-138.
    • (1994) Immunol Res , vol.13 , pp. 117-138
    • Sakkas, L.I.1    Chen, P.-F.2    Platsoucas, C.D.3
  • 33
    • 0029921352 scopus 로고    scopus 로고
    • Increased expression of interferon (IFN)-gamma together with IFN-gamma receptor in the rheumatoid synovial membrane compared with synovium of patients with osteoarthritis
    • DOLHAIN R, TER HAAR N, HOEFAKKER S, TAK P, DE LEY M, CLAASSEN E, BREEDVELD F, MILTENBURG A. Increased expression of interferon (IFN)-gamma together with IFN-gamma receptor in the rheumatoid synovial membrane compared with synovium of patients with osteoarthritis. Rheumatology 1996;35:24-32.
    • (1996) Rheumatology , vol.35 , pp. 24-32
    • Dolhain, R.1    Ter Haar, N.2    Hoefakker, S.3    Tak, P.4    De Ley, M.5    Claassen, E.6    Breedveld, F.7    Miltenburg, A.8
  • 36
    • 0030955344 scopus 로고    scopus 로고
    • Distinct roles of type I bone morphogenetic protein receptors in the formation and differentiation of cartilage
    • ZOU H, WIESER R, MASSAGUE J, NISWANDER L. Distinct roles of type I bone morphogenetic protein receptors in the formation and differentiation of cartilage. Genes Dev 1997;11:2191-2203.
    • (1997) Genes Dev , vol.11 , pp. 2191-2203
    • Zou, H.1    Wieser, R.2    Massague, J.3    Niswander, L.4
  • 39
    • 34248580620 scopus 로고    scopus 로고
    • Role of apoptotic and matrixdegrading genes in articular cartilage and meniscus of mature and aged rabbits during development of osteoarthritis
    • PENNOCK AT, ROBERTSON CM, EMMERSON BC, HARWOOD FL, AMIEL D. Role of apoptotic and matrixdegrading genes in articular cartilage and meniscus of mature and aged rabbits during development of osteoarthritis. Arthritis Rheum 2007;56:1529-1536.
    • (2007) Arthritis Rheum , vol.56 , pp. 1529-1536
    • Pennock, A.T.1    Robertson, C.M.2    Emmerson, B.C.3    Harwood, F.L.4    Amiel, D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.