Interaction relationships of osteoarthritis and rheumatoid arthritis related genes

European Review for Medical and Pharmacological Sciences

Volumn 18, Issue 2, 2014, Pages 179-184

  Zhang, Q ^a   Cheng, B ^a   Yang, C X ^a   Ge, H A ^a  

^a TONGJI UNIVERSITY   (China)

Author keywords

Differential gene; Interaction network; Osteoarthritis; Rheumatoid arthritis

Indexed keywords

ARTICLE; DATA MINING; GENE; GENE EXPRESSION; GENE INTERACTION; GENE ONTOLOGY; GENETIC ASSOCIATION; GENETIC DATABASE; HUMAN; NUCLEOTIDE SEQUENCE; OSTEOARTHRITIS; PROTEIN DATABASE; PROTEIN INTERACTION; PROTEIN PROCESSING; RHEUMATOID ARTHRITIS; ARTICULAR CARTILAGE; AUTOIMMUNE DISEASE; GENETICS; META ANALYSIS; METABOLISM; PROTEIN PROTEIN INTERACTION;

TRANSCRIPTOME;

ARTHRITIS, RHEUMATOID; AUTOIMMUNE DISEASES; CARTILAGE, ARTICULAR; HUMANS; OSTEOARTHRITIS; PROTEIN INTERACTION MAPS; TRANSCRIPTOME;

EID: 84897002208     PISSN: 11283602     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (26)

1. DIEPPE P, KIRWAN J. The localization of osteoarthritis. Rheumatology 1994; 33: 201-203.
2. ARNETT FC, EDWORTHY SM, BLOCH DA, MCSHANE DJ, FRIES JF, COOPER NS, HEALEY LA, KAPLAN SR, LIANG MH, LUTHRA HS, et al. The american rheumatism association 1987 revised criteria for the classification of rheumatoid arthritis. Arthritis Rheum 1988; 31: 315-324.
3. FIRESTEIN G, PANAYI G, WOLLHEIM F. Rheumatoid arthritis. Recherche 2006; 67: 02.
4. VAN DER HELM-VAN AHM, MIL TWJ. Advances in the genetics of rheumatoid arthritis point to subclassification into distinct disease subsets. Arthritis Res Ther 2008; 10: 205.
5. WALSH DA, WADE M, MAPP PI, BLAKE DR. Focally regulated endothelial proliferation and cell death in human synovium. Am J Pathol 1998; 152: 691-702.
6. FIRESTEIN GS, ECHEVERRI F, YEO M, ZVAIFLER NJ, GREEN DR. Somatic mutations in the p53 tumor suppressor gene in rheumatoid arthritis synovium. Proc Nat Acad Sci 1997; 94: 10895-10900.
7. VAN DER WOUDE D, HOUWING-DUISTERMAAT JJ, TOES REM, HUIZINGA TWJ, THOMSON W, WORTHINGTON J, VAN DER HELM-VAN MIL AHM, DE VRIES RRP. Quantitative heritability of anti-citrullinated protein antibody-positive and anti-citrullinated protein antibody-negative rheumatoid arthritis. Arthritis Rheum 2009; 60: 916-923.
8. UNGETHUEM U, HAEUPL T, WITT H, KOCZAN D, KRENN V, HUBER H, VON HELVERSEN TM, DRUNGOWSKI M, SEYFERT C, ZACHER J, PRUSS A, NEIDEL J, LEHRACH H, THIESEN HJ, RUIZ P, BLÄSS S. Molecular signatures and new candidates to target the pathogenesis of rheumatoid arthritis. Physiol Genomics 2010; 42: 267-282.
9. VALDES AM, SPECTOR TD. The contribution of genes to osteoarthritis. Med Clin North Am 2009; 93: 45-66.
10. SCHENA M, SHALON D, DAVIS RW, BROWN PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995; 270: 467-470.
11. SUBRAMANIAN A, TAMAYO P, MOOTHA VK, MUKHERJEE S, EBERT BL, GILLETTE MA, PAULOVICH A, POMEROY SL, GOLUB TR, LANDER ES, MESIROV JP. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc Nat Acad Sci U S A 2005; 102: 15545-15550.
12. DENNIS G JR, SHERMAN BT, HOSACK DA, YANG J, GAO W, LANE HC, LEMPICKI RA. DAVID: Database for annotation, visualization, and integrated discovery. Genome Biol 2003; 4: P3.
13. RHODES DR, YU J, SHANKER K, DESHPANDE N, VARAMBALLY R, GHOSH D, BARRETTE T, PANDEY A, CHINNAIYAN AM. Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proc Nat Acad Sci U S A 2004; 101: 9309-9314.
14. HUBER R, HUMMERT C, GAUSMANN U, POHLERS D, KOCZAN D, GUTHKE R, KINNE RW. Identification of intra-group, inter-individual, and gene-specific variances in mrna expression profiles in the rheumatoid arthritis synovial membrane. Arthritis Res Ther 2008; 10: R98.
15. SMILJANOVIC B, GRÜN J, BIESEN R, SCHULTE-WREDE U, BAUMGRASS R, STUHLMÜLLER B, MASLINSKI W, HIEPE F, BURMESTER GR, RADBRUCH A, HÄUPL T, GRÜTZKAU A. The multifaceted balance of TNF-α and type I/II interferon responses in SLE and RA: how monocytes manage the impact of cytokines. J Mol Med 2012: 90: 1295-1309.
16. DEL REY MJ, IZQUIERDO E, CAJA S, USATEGUI A, SANTIAGO B, GALINDO M, PABLOS JM. Human inflammatory synovial fibroblasts induce enhanced myeloid cell recruitment and angiogenesis through a hypoxia-inducible transcription factor 1α/vascular endothelial growth factor-mediated pathway in immunodeficient mice. Arthritis Rheum 2009; 60: 2926-2934.
17. OGATA H, GOTO S, SATO K, FUJIBUCHI W, BONO H, KANEHISA M. Kegg: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 1999; 27: 29-34.
18. ASHBURNER M, BALL CA, BLAKE JA, BOTSTEIN D, BUTLER H, CHERRY JM, DAVIS AP, DOLINSKI K, DWIGHT SS, EPPIG JT, HARRIS MA, HILL DP, ISSEL-TARVER L, KASARSKIS A, LEWIS S, MATESE JC, RICHARDSON JE, RINGWALD M, RUBIN GM, SHERLOCK G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genetics 2000; 25: 25-29.
19. STARK C, BREITKREUTZ BJ, REGULY T, BOUCHER L, BREITKREUTZ A, TYERS M. BioGRID: a general repository for interaction datasets. Nucleic Acids Res 2006; 34: D535-D539.
20. JOSHI-TOPE G, GILLESPIE M, VASTRIK I, D'EUSTACHIO P, SCHMIDT E, DE BONO B, JASSAL B, GOPINATH G, WU G, MATTHEWS L, LEWIS S, BIRNEY E, STEIN L. Reactome: a knowledgebase of biological pathways. Nucleic Acids Res 2005; 33: D428-D432.
21. SHANNON P, MARKIEL A, OZIER O, BALIGA NS, WANG JT, RAMAGE D, AMIN N, SCHWIKOWSKI B, IDEKER T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003; 13: 2498-2504.
22. LI X, NI R, CHEN J, LIU Z, XIAO M, JIANG F, LU C. The presence of ighg1 in human pancreatic carcinomas is associated with immune evasion mechanisms. Pancreas 2011; 40: 753-761.
23. BEAULIEU E, MORAND EF. Role of gilz in immune regulation, glucocorticoid actions and rheumatoid arthritis. Nature Rev Rheumatol 2011; 7: 340-348.
24. HUANG CJ, LIAO HT, YEH GC, HUNG KL. Distribution of HLA-DQB1 alleles in patients with Kleine-Levin syndrome. J Clin Neurosci 2012; 19: 628-630.
25. VON MERING C, BORK P. Teamed up for transcription. Nature 2002; 417: 797-798.
26. ZHANG J, YANG Y, WANG Y, WANG Z, YIN M, SHEN X. Identification of hub genes related to the recovery phase of irradiation injury by microarray and integrated gene network analysis. PloS one 2011; 6: e24680.