메뉴 건너뛰기




Volumn 33, Issue 7, 2015, Pages 1558-1566

Reading sequence-directed computational nucleosome maps

Author keywords

alternative nucleosome positions; chromatin structure; chromosome structure; columns; strong nucleosome

Indexed keywords

CHROMATIN; NUCLEOSOME;

EID: 84939982426     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2014.958877     Document Type: Article
Times cited : (7)

References (40)
  • 3
    • 0019880872 scopus 로고
    • Chromatin superstructure: The next level of structure above the nucleosome has an alternating character. A two-nucleosome based series is generated by probes armed with DNAase-I acting on isolated nuclei
    • Burgoyne, L. A., & Skinner, J. D. (1981). Chromatin superstructure: The next level of structure above the nucleosome has an alternating character. A two-nucleosome based series is generated by probes armed with DNAase-I acting on isolated nuclei. Biochemical and Biophysical Research Communications, 99, 893-899.
    • (1981) Biochemical and Biophysical Research Communications , vol.99 , pp. 893-899
    • Burgoyne, L.A.1    Skinner, J.D.2
  • 4
    • 0036307707 scopus 로고    scopus 로고
    • Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution
    • Davey, C. A., Sargent, D. F., Luger, K., Maeder, A. W., & Richmond, T. J. (2002). Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution. Journal of Molecular Biology, 319, 1097-1113.
    • (2002) Journal of Molecular Biology , vol.319 , pp. 1097-1113
    • Davey, C.A.1    Sargent, D.F.2    Luger, K.3    Maeder, A.W.4    Richmond, T.J.5
  • 5
    • 0018273790 scopus 로고
    • Nucleosome arcs and helices
    • Dubochet, J., & Noll, M. (1978). Nucleosome arcs and helices. Science, 202, 280-286.
    • (1978) Science , vol.202 , pp. 280-286
    • Dubochet, J.1    Noll, M.2
  • 9
    • 84886738495 scopus 로고    scopus 로고
    • Unusual DNA packaging characteristics in endoreduplicated Caenorhabditis elegans oocytes defined by in vivo accessibility to an endogenous nuclease activity
    • Gu, S. G., Goszczynski, B., McGhee, J. D., & Fire, A. Z. (2013). Unusual DNA packaging characteristics in endoreduplicated Caenorhabditis elegans oocytes defined by in vivo accessibility to an endogenous nuclease activity. Epigenetics & Chromatin, 6, 37.
    • (2013) Epigenetics & Chromatin , vol.6 , pp. 37
    • Gu, S.G.1    Goszczynski, B.2    McGhee, J.D.3    Fire, A.Z.4
  • 10
    • 80053933779 scopus 로고    scopus 로고
    • High resolution positioning of intron ends on the nucleosomes
    • Hapala, J., & Trifonov, E. N. (2011). High resolution positioning of intron ends on the nucleosomes. Gene, 489, 6-10.
    • (2011) Gene , vol.489 , pp. 6-10
    • Hapala, J.1    Trifonov, E.N.2
  • 11
    • 84881242578 scopus 로고    scopus 로고
    • Nucleosomal TATAswitch: Competing orientations of TATA on the nucleosome
    • Hapala, J., & Trifonov, E. N. (2013). Nucleosomal TATAswitch: Competing orientations of TATA on the nucleosome. Gene, 527, 339-343.
    • (2013) Gene , vol.527 , pp. 339-343
    • Hapala, J.1    Trifonov, E.N.2
  • 12
    • 0019573979 scopus 로고
    • Nucleodisome - A new repeat unit of chromatin revealed in nuclei of pigeon erythrocytes by DNase-I digestion
    • Khachatrian, A. T., Pospelov, V. A., Svetlikova, S. B., & Vorobiev, V. I. (1981). Nucleodisome - A new repeat unit of chromatin revealed in nuclei of pigeon erythrocytes by DNase-I digestion. FEBS Letters, 128, 90-92.
    • (1981) FEBS Letters , vol.128 , pp. 90-92
    • Khachatrian, A.T.1    Pospelov, V.A.2    Svetlikova, S.B.3    Vorobiev, V.I.4
  • 13
    • 0037125194 scopus 로고    scopus 로고
    • What positions nucleosomes? - A model
    • Kiyama, R., & Trifonov, E. N. (2002). What positions nucleosomes? - A model. FEBS Letters, 523, 7-11.
    • (2002) FEBS Letters , vol.523 , pp. 7-11
    • Kiyama, R.1    Trifonov, E.N.2
  • 14
    • 0023777538 scopus 로고
    • Statistical distributions of nucleosomes: Nonrandom locations by a stochastic mechanism
    • Kornberg, R. D., & Stryer, L. (1988). Statistical distributions of nucleosomes: Nonrandom locations by a stochastic mechanism. Nucleic Acids Research, 16, 6677-6690.
    • (1988) Nucleic Acids Research , vol.16 , pp. 6677-6690
    • Kornberg, R.D.1    Stryer, L.2
  • 15
    • 0034080775 scopus 로고    scopus 로고
    • Chiral discotic columnar germs of nucleosome core particles
    • Livolant, F., & Leforestier, A. (2000). Chiral discotic columnar germs of nucleosome core particles. Biophysical Journal, 78, 2716-2729.
    • (2000) Biophysical Journal , vol.78 , pp. 2716-2729
    • Livolant, F.1    Leforestier, A.2
  • 16
    • 0032512794 scopus 로고    scopus 로고
    • New DNA sequence rules for high affinity binding to histone octamer and sequencedirected nucleosome positioning
    • Lowary, P. T., & Widom, J. (1998). New DNA sequence rules for high affinity binding to histone octamer and sequencedirected nucleosome positioning. Journal of Molecular Biology, 276, 19-42.
    • (1998) Journal of Molecular Biology , vol.276 , pp. 19-42
    • Lowary, P.T.1    Widom, J.2
  • 17
    • 0021100990 scopus 로고
    • Nucleotide sequence-directed mapping of the nucleosomes
    • Mengeritsky, G., & Trifonov, E. N. (1983). Nucleotide sequence-directed mapping of the nucleosomes. Nucleic Acids Research, 11, 3833-3851.
    • (1983) Nucleic Acids Research , vol.11 , pp. 3833-3851
    • Mengeritsky, G.1    Trifonov, E.N.2
  • 18
    • 0019321987 scopus 로고
    • Self-assembly of single and closely spaced nucleosome core particles
    • Noll, M., Zimmer, S., Engel, A., & Dubochet, J. (1980). Self-assembly of single and closely spaced nucleosome core particles. Nucleic Acids Research, 8, 21-42.
    • (1980) Nucleic Acids Research , vol.8 , pp. 21-42
    • Noll, M.1    Zimmer, S.2    Engel, A.3    Dubochet, J.4
  • 19
    • 0017653814 scopus 로고
    • The arrangement of nucleosomes in nucleoprotein complexes from polyoma virus and SV40
    • Ponder, B., & Crawford, L. (1977). The arrangement of nucleosomes in nucleoprotein complexes from polyoma virus and SV40. Cell, 11, 35-49.
    • (1977) Cell , vol.11 , pp. 35-49
    • Ponder, B.1    Crawford, L.2
  • 20
    • 0018416116 scopus 로고
    • Nucleosome packing in interphase chromatin
    • Rattner, J. B., & Hamkalo, B. A. (1979). Nucleosome packing in interphase chromatin. The Journal of Cell Biology, 81 (2), 453-457.
    • (1979) The Journal of Cell Biology , vol.81 , Issue.2 , pp. 453-457
    • Rattner, J.B.1    Hamkalo, B.A.2
  • 21
    • 84908576219 scopus 로고    scopus 로고
    • Strong nucleosomes of A. Thaliana concentrate in centromere regions
    • Salih, B., & Trifonov, E. N. (2013). Strong nucleosomes of A. thaliana concentrate in centromere regions. Journal of Biomolecular Structure & Dynamics. doi:10(1080/ 07391102), 2013, 860624
    • (2013) Journal of Biomolecular Structure & Dynamics , vol.2013 , pp. 860624
    • Salih, B.1    Trifonov, E.N.2
  • 25
    • 57749182426 scopus 로고    scopus 로고
    • Sequence structure of hidden 10.4-base repeat in the nucleosomes of C. Elegans
    • Salih, F., Salih, B., & Trifonov, E. N. (2008). Sequence structure of hidden 10.4-base repeat in the nucleosomes of C. elegans. Journal of Biomolecular Structure & Dynamics, 26, 273-281.
    • (2008) Journal of Biomolecular Structure & Dynamics , vol.26 , pp. 273-281
    • Salih, F.1    Salih, B.2    Trifonov, E.N.3
  • 27
    • 84857998136 scopus 로고    scopus 로고
    • Current SEM techniques for de- and re-construction of centromeres to determine 3D CENH3 distribution in barley mitotic chromosomes
    • Schroeder-Reiter, E., Sanei, M., Houben, A., & Wanner, G. (2012). Current SEM techniques for de- and re-construction of centromeres to determine 3D CENH3 distribution in barley mitotic chromosomes. Journal of Microscopy, 246, 96-106.
    • (2012) Journal of Microscopy , vol.246 , pp. 96-106
    • Schroeder-Reiter, E.1    Sanei, M.2    Houben, A.3    Wanner, G.4
  • 31
    • 0017890560 scopus 로고
    • The helical model of the nucleosome core
    • Trifonov, E. (1978). The helical model of the nucleosome core. Nucleic Acids Research, 5, 1371-1380.
    • (1978) Nucleic Acids Research , vol.5 , pp. 1371-1380
    • Trifonov, E.1
  • 32
    • 77951969370 scopus 로고    scopus 로고
    • Nucleosome positioning by sequence, state of the art and apparent finale
    • Trifonov, E. N. (2010). Nucleosome positioning by sequence, state of the art and apparent finale. Journal of Biomolecular Structure and Dynamics, 27, 741-746.
    • (2010) Journal of Biomolecular Structure and Dynamics , vol.27 , pp. 741-746
    • Trifonov, E.N.1
  • 33
    • 79952183494 scopus 로고    scopus 로고
    • Cracking the chromatin code: Precise rule of nucleosome positioning
    • Trifonov, E. N. (2011). Cracking the chromatin code: Precise rule of nucleosome positioning. Physics of Life Reviews, 8, 39-50.
    • (2011) Physics of Life Reviews , vol.8 , pp. 39-50
    • Trifonov, E.N.1
  • 36
    • 77957252758 scopus 로고    scopus 로고
    • Crystal structures of nucleosome core particles containing the '601' strong positioning sequence
    • Vasudevan, D., Chua, E. Y. D., & Davey, C. A. (2010). Crystal structures of nucleosome core particles containing the '601' strong positioning sequence. Journal of Molecular Biology, 403(1), 1-10.
    • (2010) Journal of Molecular Biology , vol.403 , Issue.1 , pp. 1-10
    • Vasudevan, D.1    Chua, E.Y.D.2    Davey, C.A.3
  • 39
    • 77951639211 scopus 로고    scopus 로고
    • Structural insight into the sequence dependence of nucleosome positioning
    • Wu, B., Mohideen, K., Vasudevan, D., & Davey, C. A. (2010). Structural insight into the sequence dependence of nucleosome positioning. Structure, 18, 528-536.
    • (2010) Structure , vol.18 , pp. 528-536
    • Wu, B.1    Mohideen, K.2    Vasudevan, D.3    Davey, C.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.