메뉴 건너뛰기




Volumn 33, Issue 3, 2015, Pages 666-673

Universal full-length nucleosome mapping sequence probe

Author keywords

Matrix of bendability; Nucleosome positioning; Nucleosome probe; RR YY probe; Strong nucleosome

Indexed keywords

DINUCLEOTIDE; DNA; DNA BASE; PURINE; PYRIMIDINE; DNA PROBE; HELMINTH DNA; NUCLEOSOME; PLANT DNA;

EID: 84919843777     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2014.891262     Document Type: Article
Times cited : (5)

References (21)
  • 1
    • 77953295415 scopus 로고    scopus 로고
    • Structure-based analysis of dna sequence patterns guiding nucleosome positioning in vitro
    • Cui, F., & Zhurkin, V. B. (2010). Structure-based analysis of DNA sequence patterns guiding nucleosome positioning in vitro. Journal of Biomolecular Structure and Dynamics, 27, 821-841.
    • (2010) Journal of Biomolecular Structure and Dynamics , vol.27 , pp. 821-841
    • Cui, F.1    Zhurkin, V.B.2
  • 2
    • 79954573517 scopus 로고    scopus 로고
    • Nucleosome dna sequence structure of isochores
    • Frenkel, Z. M., Bettecken, T., & Trifonov, E. N. (2011). Nucleosome DNA sequence structure of isochores. BMC Genomics, 12, 203.
    • (2011) BMC Genomics , vol.12 , pp. 203
    • Frenkel, Z.M.1    Bettecken, T.2    Trifonov, E.N.3
  • 5
    • 77951944594 scopus 로고    scopus 로고
    • FineSTR: A web server for single-base-resolution nucleosome positioning
    • Gabdank, I., Barash, D., & Trifonov, E. N. (2010b). FineSTR: A web server for single-base-resolution nucleosome positioning. Bioinformatics, 26, 845-846.
    • (2010) Bioinformatics , vol.26 , pp. 845-846
    • Gabdank, I.1    Barash, D.2    Trifonov, E.N.3
  • 6
    • 80053933779 scopus 로고    scopus 로고
    • High resolution positioning of intron ends on the nucleosomes
    • Hapala, J., & Trifonov, E. N. (2011). High resolution positioning of intron ends on the nucleosomes. Gene, 489, 6-10.
    • (2011) Gene , vol.489 , pp. 6-10
    • Hapala, J.1    Trifonov, E.N.2
  • 7
    • 84881242578 scopus 로고    scopus 로고
    • Nucleosomal tataswitch: Competing orientations of tata on the nucleosome
    • Hapala, J., & Trifonov, E. N. (2013). Nucleosomal TATAswitch: Competing orientations of TATA on the nucleosome. Gene, 527, 339-343.
    • (2013) Gene , vol.527 , pp. 339-343
    • Hapala, J.1    Trifonov, E.N.2
  • 9
    • 0032512794 scopus 로고    scopus 로고
    • New dna sequence rules for high affinity binding to histone octamer and sequencedirected nucleosome positioning
    • Lowary, P. T., & Widom, J. (1998). New DNA sequence rules for high affinity binding to histone octamer and sequencedirected nucleosome positioning. Journal of Molecular Biology, 276, 19-42.
    • (1998) Journal of Molecular Biology , vol.276 , pp. 19-42
    • Lowary, P.T.1    Widom, J.2
  • 10
    • 0021100990 scopus 로고
    • Nucleotide sequence-directed mapping of the nucleosomes
    • Mengeritsky, G., & Trifonov, E. N. (1983). Nucleotide sequence-directed mapping of the nucleosomes. Nucleic Acids Research, 11, 3833-3851.
    • (1983) Nucleic Acids Research , vol.11 , pp. 3833-3851
    • Mengeritsky, G.1    Trifonov, E.N.2
  • 11
    • 34147191973 scopus 로고    scopus 로고
    • DNA stretching and extreme kinking in the nucleosome core
    • Ong, M. S., Richmond, T. J., & Davey, C. A. (2007). DNA stretching and extreme kinking in the nucleosome core. Journal of Molecular Biology, 368, 1067-1074.
    • (2007) Journal of Molecular Biology , vol.368 , pp. 1067-1074
    • Ong, M.S.1    Richmond, T.J.2    Davey, C.A.3
  • 12
    • 78650937771 scopus 로고    scopus 로고
    • Nucleosome positioning pattern derived from oligonucleotide compositions of genomic sequences
    • Rapoport, A. E., Frenkel, Z. M., & Trifonov, E. N. (2011). Nucleosome positioning pattern derived from oligonucleotide compositions of genomic sequences. Journal of Biomolecular Structure and Dynamics, 28, 567-574.
    • (2011) Journal of Biomolecular Structure and Dynamics , vol.28 , pp. 567-574
    • Rapoport, A.E.1    Frenkel, Z.M.2    Trifonov, E.N.3
  • 13
  • 17
    • 73049098277 scopus 로고    scopus 로고
    • Predicting nucleosome positions on the dna: Combining intrinsic sequence preferences and remodeler activities
    • Teif, V. B., & Rippe, K. (2009). Predicting nucleosome positions on the DNA: Combining intrinsic sequence preferences and remodeler activities. Nucleic Acids Research, 37, 5641-5655.
    • (2009) Nucleic Acids Research , vol.37 , pp. 5641-5655
    • Teif, V.B.1    Rippe, K.2
  • 18
    • 76749140862 scopus 로고    scopus 로고
    • Base pair stacking in nucleosome dna and bendability sequence pattern
    • Trifonov, E. N. (2010). Base pair stacking in nucleosome DNA and bendability sequence pattern. Journal of Theoretical Biology, 263, 337-339.
    • (2010) Journal of Theoretical Biology , vol.263 , pp. 337-339
    • Trifonov, E.N.1
  • 19
    • 79952183494 scopus 로고    scopus 로고
    • Cracking the chromatin code: Precise rule of nucleosome positioning
    • Trifonov, E. N. (2011). Cracking the chromatin code: Precise rule of nucleosome positioning. Physics of Life Reviews, 8, 39-50.
    • (2011) Physics of Life Reviews , vol.8 , pp. 39-50
    • Trifonov, E.N.1
  • 21
    • 79959557189 scopus 로고    scopus 로고
    • Determinants of nucleosome organization in primary human cells
    • Valouev, A., Johnson, S. M., Boyd, S. D., Smith, C. L., Fire, A. Z., & Sidow, A. (2011). Determinants of nucleosome organization in primary human cells. Nature, 474, 516-520.
    • (2011) Nature , vol.474 , pp. 516-520
    • Valouev, A.1    Johnson, S.M.2    Boyd, S.D.3    Smith, C.L.4    Fire, A.Z.5    Sidow, A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.