Regulatory role of cellular and viral microRNAs in insect-virus interactions

Current Opinion in Insect Science

Volumn 8, Issue , 2015, Pages 104-110

  Asgari, Sassan ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84939957518     PISSN: 22145745     EISSN: 22145753     Source Type: Journal    
DOI: 10.1016/j.cois.2014.12.008     Document Type: Review

References (62)

1. D.P. Bartel MicroRNAs: target recognition and regulatory functions Cell 23 2009 215 233
2. A. Grundhoff, and C.S. Sullivan Virus-encoded microRNAs Virology 411 2011 325 343
3. A. Shmaryahu, M. Carrasco, and P. Valenzuela Prediction of bacterial microRNAs and possible targets in human cell transcriptome J Microbiol 52 2014 482 489
4. Y. Furuse, R. Finethy, H. Saka, A. Xet-Mull, D. Sisk, K. Smith, S. Lee, J. Coers, R. Valdivia, and D. Tobin et al. Search for microRNAs expressed by intracellular bacterial pathogens in infected mammalian cells PLOS ONE 9 2014 e106434
5. R.C. Lee, R.L. Feinbaum, and V. Ambros The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 Cell 75 1993 843 854
6. A. Kozomara, and S. Griffiths-Jones miRBase: annotating high confidence microRNAs using deep sequencing data Nucleic Acids Res 42 2014 D68 D73
7. K. Okamura, J.W. Hagen, H. Duan, D.M. Tyler, and E.C. Lai The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila Cell 130 2007 89 100
8. C. Ender, A. Krek, M. Friedlander, M. Beitzinger, L. Weinmann, W. Chen, S. Pfeffer, N. Rajewsky, and G. Meister A human snoRNA with microRNA-like functions Mol Cell 32 2008 519 528
9. J.E. Babiarz, J.G. Ruby, Y. Wang, D.P. Bartel, and R. Blelloch Mouse ES cells express endogenous shRNAs, siRNAs, and other microprocessor-independent, Dicer-dependent small RNAs Genes Dev 22 2008 2773 2785
10. W.J. Chung, K. Okamura, R. Martin, and E.C. Lai Endogenous RNA interference provides a somatic defense against Drosophila transposons Curr Biol 18 2008 795 802
11. B. Czech, C.D. Malone, R. Zhou, A. Stark, C. Schlingeheyde, M. Dus, N. Perrimon, M. Kellis, J. Wohlschlegel, and R. Sachidanandam et al. An endogenous siRNA pathway in Drosophila Nature 453 2008 798 802
12. G. Chawla, and N.S. Sokol MicroRNAs in Drosophila development Int Rev Cell Mol Biol 286 2011 1 65
13. K. Lucas, K. Myles, and A. Raikhel Small RNAs: a new frontier in mosquito biology Trends Parasitol 29 2013 295 303
14. S. Asgari MicroRNA functions in insects Insect Biochem Mol Biol 43 2013 388 397
15. S. Asgari Role of microRNAs in arbovirus/vector interactions Viruses 6 2014 3514 3534
16. K. Conrad, F. Giering, C. Erfurth, A. Neumann, C. Fehr, G. Meister, and M. Niepmann MicroRNA-122 dependent binding of Ago2 protein to hepatitis C virus RNA is associated with enhanced RNA stability and translation stimulation PLOS ONE 8 2013 e56272
17. U.A. Orom, F.C. Nielsen, and A.H. Lund MicroRNA-10a binds the 5′ UTR of ribosomal protein mRNAs and enhances their translation Mol Cell 30 2008 460 471
18. I.G. Bruno, R. Karam, L. Huang, A. Bhardwaj, C.H. Lou, E.Y. Shum, H.W. Song, M.A. Corbett, W.D. Gifford, and J. Gecz et al. Identification of a microRNA that activates gene expression by repressing nonsense-mediated RNA decay Mol Cell 42 2011 500 510
19. F. Ma, X.G. Liu, D. Li, P. Wang, N. Li, L. Lu, and X. Cao MicroRNA-466l upregulates IL-10 expression in TLR-triggered macrophages by antagonizing RNA-binding protein tristetraprolin-mediated IL-10 mRNA degradation J Immunol 184 2010 6053 6059
20. M. Hafner, M. Landthaler, L. Burger, M. Khorshid, J. Hausser, P. Berninger, A. Rothballer, M.J. Ascano, A.C. Jungkamp, and M. Munschauer et al. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP Cell 141 2010 129 141
21. A. Helwak, G. Kudla, T. Dudnakova, and D. Tollervey Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding Cell 153 2013 654 665
22. F. Grey, R. Tirabassi, H. Meyers, G. Wu, S. McWeeney, L. Hook, and J.A. Nelson A viral microRNA down-regulates multiple cell cycle genes through mRNA 5′UTRs PLoS Pathog 6 2010 e1000967
23. M. Hussain, T. Walker, S. O'Neill, and S. Asgari Blood meal induced microRNA regulates development and immune associated genes in the Dengue mosquito vector, Aedes aegypti Insect Biochem Mol Biol 43 2013 146 152
24. C. Shin, J.-W. Nam, K.K. Farh, H.R. Chiang, A. Shkumatava, and D.P. Bartel Expanding the microRNA targeting code: functional sites with centered pairing Mol Cell 38 2010 789 802
25. M. Hussain, and S. Asgari MicroRNAs as mediators of insect host-pathogen interactions and immunity J Insect Physiol 70 2014 151 158
26. A. Bronkhorst, and R. van Rij The long and short of antiviral defense: small RNA-based immunity in insects Curr Opin Virol 7C 2014 19 28
27. J. Xu, and S. Cherry Viruses and antiviral immunity in Drosophila Dev Comp Immunol 42 2014 67 84
28. B. Jayachandran, M. Hussain, and S. Asgari Regulation of Helicoverpa armigera ecdysone receptor by miR-14 and its potential link to baculovirus infection J Invertebr Pathol 114 2013 151 157
29. M. Mehrabadi, M. Hussain, and S. Asgari MicroRNAome of Spodoptera frugiperda cells (Sf9) and its alteration following baculovirus infection J Gen Virol 94 2013 1385 1397
30. C.P. Singh, J. Singh, and J. Nagaraju A baculovirus-encoded microRNA (miRNA) suppresses its host miRNA biogenesis by regulating the exportin-5 cofactor Ran J Virol 86 2012 7867 7879
31. M. Hussain, and S. Asgari Functional analysis of a cellular microRNA in insect host-ascovirus interaction J Virol 84 2010 612 620
32. P. Wu, S. Han, T. Chen, G. Qin, L. Li, and X. Guo Involvement of microRNAs in infection of silkworm with Bombyx mori cytoplasmic polyhedrosis virus (BmCPV) PLOS ONE 8 2013 e68209
33. R. Skalsky, D.L. Vanlandingham, F. Scholle, S. Higgs, and B.R. Cullen Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus BMC Genomics 11 2010 119
34. C.L. Campbell, T. Harrison, A.M. Hess, and G.D. Ebel MicroRNA levels are modulated in Aedes aegypti after exposure to Dengue-2 Insect Mol Biol 23 2014 132 139
35. S. Backes, J. Shapiro, L. Sabin, A. Pham, I. Reyes, B. Moss, S. Cherry, and B. tenOever Degradation of host microRNAs by poxvirus poly(A) polymerase reveals terminal RNA methylation as a protective antiviral mechanism Cell Host Microbe 16 2012 200 210
36. A. Kozomara, S. Hunt, M. Ninova, S. Griffiths-Jones, and M. Ronshaugen Target repression induced by endogenous microRNAs: large differences, small effects PLoS ONE 9 2014 e104286
37. H. Yan, Y. Zhou, Y. Liu, Y. Deng, and X. Chen miR-252 of the Asian tiger mosquito Aedes albopictus regulates dengue virus replication by suppressing the expression of the dengue virus envelope protein J Med Virol 86 2014 1428 1436
38. A. Slonchak, M. Hussain, S. Torres Morales, S. Asgari, and A.A. Khromykh Expression of mosquito microRNA aae-miR-2940-5p is down-regulated in response to West Nile virus infection to restrict viral replication J Virol 88 2014 8457 8467
39. M. Hussain, F.D. Frentiu, L.A. Moreira, S.L. O'Neill, and S. Asgari Wolbachia utilizes host microRNAs to manipulate host gene expression and facilitate colonization of the dengue vector Aedes aegypti Proc Natl Acad Sci USA 108 2011 9250 9255
40. M. Hussain, R.J. Taft, and S. Asgari An insect virus-encoded microRNA regulates viral replication J Virol 82 2008 9164 9170
41. C.P. Singh, J. Singh, and J. Nagaraju bmnpv-miR-3 facilitates BmNPV infection 1 by modulating the 2 expression of viral P6.9 and other late genes in Bombyx mori Insect Biochem Mol Biol 49 2014 59 69
42. M. Zhu, J. Wang, R. Deng, P. Xiong, H. Liang, and X. Wang A microRNA encoded by Autographa californica nucleopolyhedrovirus regulates expression of viral gene ODV-E25 J Virol 87 2013 13029 13034
43. Y.-L. Wu, C.P. Wu, C.Y.Y. Liu, P.W.-C. Hsu, E.C. Wu, and Y.C. Chao A non-coding RNA of insect HzNV-1 virus establishes latent viral infection through microRNA Sci Rep 1 2011 60
44. D. Hughes, R. Possee, and L. King Evidence for the presence of a low-level, persistent baculovirus infection of Mamestra brassicae insects J Gen Virol 78 1997 1801 1805
45. B.R. Cullen Viruses and microRNAs Nat Genet 38 2006 S25 S30
46. R.L. Skalsky, and B.R. Cullen Viruses, microRNAs, and host interactions Annu Rev Microbiol 64 2010 123 141
47. A. Varble, M. Chua, J. Perez, B. Manicassamy, A. Garcia-Sastre, and B. tenOever Engineered RNA viral synthesis of microRNAs Proc Natl Acad Sci USA 107 2010 11519
48. J.P. Shapiro, R.A. Langlois, A.M. Pham, and B.R. tenOever Evidence for a cytoplasmic microprocessor of pri-miRNAs RNA 18 2012 1338 1346
49. A. Whisnant, H. Bogerd, O. Flores, P. Ho, J. Powers, N. Sharova, M. Stevenson, C. Chen, and B. Cullen In-depth analysis of the interaction of HIV-1 with cellular microRNA biogenesis and effector mechanisms MBio 4 2013 e000193
50. A. Harwig, A. Das, and B. Berkhout Retroviral microRNAs Curr Opin Virol 7 2014 47 54
51. J. Lin, and B.R. Cullen Analysis of the interaction of primate retroviruses with the human RNA interference machinery J Virol 81 2007 12218 12226
52. M. Hussain, S. Torres, E. Schnettler, A. Funk, A. Grundhoff, G.P. Pijlman, A.A. Khromykh, and S. Asgari West Nile virus encodes a microRNA-like small RNA in the 3′ untranslated region which upregulates GATA4 mRNA and facilitates virus replication in mosquito cells Nucleic Acids Res 40 2012 2210 2223
53. M. Hussain, and S. Asgari MicroRNA-like viral small RNA from Dengue virus 2 autoregulates its replication in mosquito cells Proc Natl Acad Sci USA 111 2014 2746 2751
54. H. Bogerd, R. Skalsky, E. Kennedy, Y. Furuse, A. Whisnant, O. Flores, K. Schultz, N. Putnam, N. Barrows, and B. Sherry et al. Replication of many human viruses is refractory to inhibition by endogenous cellular microRNAs J Virol 88 2014 8065 8076
55. J.C. Scott, D.E. Brackney, C.L. Campbell, V. Bondu-Hawkins, B. Hjelle, G.D. Ebel, K.E. Olson, and C.D. Blair Comparison of Dengue virus type 2-specific small RNAs from RNA interference-competent and -incompetent mosquito cells PLoS Negl Trop Dis 4 2010 e848
56. D. Brackney, J. Beane, and G. Ebel RNAi targeting of West Nile virus in mosquito midguts promotes virus diversification PLoS Pathog 5 2009 e1000502
57. G. Sun, X. Wu, J. Wang, H. Li, X. Li, H. Gao, J. Rossi, and Y. Yen A bias-reducing strategy in profiling small RNAs using Solexa RNA 17 2011 2256 2262
58. A. Jayaprakash, O. Jabado, B. Brown, and R. Sachidanandam Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing Nucleic Acids Res 39 2011 e141
59. M. Hafner, N. Renwick, M. Brown, A. Mihailovic, D. Holoch, C. Lin, J. Pena, J. Nus-baum, P. Morozov, and J. Ludwig et al. RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries RNA 17 2011 1697 1712
60. K. Sorefan, H. Pais, A. Hall, A. Kozomara, S. Griffiths-Jones, V. Moulton, and T. Dalmay Reducing ligation bias of small RNAs in libraries for next generation sequencing Silence 3 2012 4
61. S. Pfeffer, A. Sewer, M. Lagos-Quintana, R. Sheridan, C. Sander, F.A. Grasser, L.F. van Dyk, C.K. Ho, S. Shuman, and M. Chien et al. Identification of microRNAs of the herpesvirus family Nat Methods 2 2005 269 276
62. G. Stik, B. Muylkens, D. Coupeau, S. Laurent, G. Dambrine, M. Messmer, B. Chane-Woon-Ming, S. Pfeffer, and D. Rasschaert Small RNA cloning and sequencing strategy affects host and viral microRNA expression signatures J Biotechnol 181 2014 35 44