Involvement of MicroRNAs in Infection of Silkworm with Bombyx mori Cytoplasmic Polyhedrosis Virus (BmCPV)

PLoS ONE

Volumn 8, Issue 7, 2013, Pages

  Wu, Ping ^a,b   Han, Shaohua ^a   Chen, Tao ^a,b   Qin, Guangxing ^a   Li, Long ^a,b   Guo, Xijie ^a,b  

^a JIANGSU UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b AGRO ENVIRONMENTAL PROTECTION INSTITUTE   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

ARTICLE; BACULOVIRUS; BIOINFORMATICS; BOMBYX MORI; BOMBYX MORI CYTOPLASMIC POLYHEDROSIS VIRUS; CONTROLLED STUDY; GENE CONSTRUCT; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENE LIBRARY; GENE LOCATION; HOST PATHOGEN INTERACTION; MIDGUT; NONHUMAN; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ANALYSIS; RNA GENE; RNA SEQUENCE; TISSUE DISTRIBUTION; VIRUS INFECTION;

ANIMALS; BOMBYX; DIGESTIVE SYSTEM; GENE EXPRESSION PROFILING; GENE LIBRARY; GENE ONTOLOGY; HOST-PATHOGEN INTERACTIONS; MICRORNAS; REOVIRIDAE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; TIME FACTORS;

BOMBYX MORI; BOMBYX MORI CYPOVIRUS 1; HEXAPODA;

EID: 84879774224     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0068209     Document Type: Article

References (65)

1. Shapiro A, Green T, Rao S, White S, Carner G, et al. (2005) Morphological and molecular characterization of a cypovirus (Reoviridae) from the mosquito Uranotaenia sapphirina (Diptera: Culicidae). J Virol 79: 9430-9438.
2. Graham RI, Rao S, Possee RD, Sait SM, Mertens PP, et al. (2006) Detection and characterization of three novel species of reovirus (Reoviridae), isolated from geographically separate populations of the winter moth Operophtera brumata (Lepidoptera: Geometridae) on Orkney. J Invertebr Pathol 91: 79-87.
3. Fujii-Kawata I, Miura KI, (1970) Segments of genome of viruses containing double-stranded ribonucleic acid. J Mol Biol 51: 247-253.
4. Rubinstein R, Harley EH, Losman M, Lutton D, (1976) The nucleic acids of viruses infecting Heliothis armigera. Virology 69: 323-326.
5. Magnoler A, (1974) Effects of a cytoplasmic polyhedrosis on larval and post larval stages of the gypsy moth, Porthetria dispar. J Invertebr Pathol 23: 263-274.
6. Ambros V, (2004) The functions of animal microRNAs. Nature 431: 350-355.
7. Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
8. Nairz K, Rottig C, Rintelen F, Zdobnov E, Moser M, et al. (2006) Overgrowth caused by misexpression of a microRNA with dispensable wild-type function. Dev Biol 291: 314-324.
9. Lu LF, Liston A, (2009) MicroRNA in the immune system, microRNA as an immune system. Immunology 127: 291-298.
10. Asgari S, (2011) Role of microRNAs in insect host-microorganism interactions. Front Physiol 2: 48.
11. Skalsky RL, Cullen BR, (2010) Viruses, microRNAs, and host interactions. Annu Rev Microbiol 64: 123-141.
12. Hussain M, Taft RJ, Asgari S, (2008) An insect virus-encoded microRNA regulates viral replication. J Virol 82: 9164-9170.
13. Singh J, Singh CP, Bhavani A, Nagaraju J, (2010) Discovering microRNAs from Bombyx mori nucleopolyhedrosis virus. Virology 407: 120-128.
14. Lecellier CH, Dunoyer P, Arar K, Lehmann-Che J, Eyquem S, et al. (2005) A cellular microRNA mediates antiviral defense in human cells. Science 308: 557-560.
15. Jopling CL, (2008) Regulation of hepatitis C virus by microRNA-122. Biochem Soc Trans 36: 1220-1223.
16. Singh CP, Singh J, Nagaraju J, (2012) A baculovirus-encoded microRNA(miRNA) suppresses its host miRNA biogenesis by regulating the Exportin-5 cofactor Ran. J Virol 86: 7867-7879.
17. Hussain M, Asgari S, (2010) Functional analysis of a cellular microRNA in insect host-ascovirus interaction. J Virol 84: 612-620.
18. Liu S, Gao S, Zhang D, Yin J, Xiang Z, et al. (2010) MicroRNAs show diverse and dynamic expression patterns in multiple tissues of Bombyx mori. BMC Genomics 11: 85.
19. Cao J, Tong C, Wu X, Lv J, Yang Z, et al. (2008) Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system. Insect Biochem Mol Biol 38: 1066-1071.
20. Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
21. Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ, (2008) miRBase: tools for microRNA genomics. Nucleic Acids Res 36: D154-158.
22. Dsouza M, Larsen N, Overbeek R, (1997) Searching for patterns in genomic data. Trends Genet 13: 497-498.
23. Rice P, Longden L, Bleasby A, (2000) EMBOSS: the European molecular biology open software suite. Trends Genet 16: 276-277.
24. Jones-Rhoades MW, Bartel DP, (2004) Computational identification of MetazoamicroRNAs and their targets, including a stress-induced microRNA. Mol Cell 14: 787-799.
25. Hofacker IL, Fontana W, Stadler PF, Bonhoeffer LS, Tacker M, et al. (1994) Fast folding and comparison of RNA secondary structures. Monatsh Chem 125: 167-188.
26. John B, Enright AJ, Aravin A, Tuschl T, Sander C, et al. (2004) Human MicroRNA targets. PLoS Biol 2: e363.
27. Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, et al. (2005) Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res. 33: e179.
28. Khvorova A, Reynolds A, Jayasena SD, (2003) Functional siRNAs and miRNAs exhibit strand bias. Cell 115: 209-216.
29. Schwarz DS, Hutvagner G, Du T, Xu Z, Aronin N, et al. (2003) Asymmetry in the assembly of the RNAi enzyme complex. Cell 115: 199-208.
30. He L, Hannon GJ, (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 5: 522-531.
31. Tanaka H, Sagisaka A, Fujita K, Kaneko Y, Imanishi S, et al. (2009) Lipopolysaccharide elicits expression of immune-related genes in the silkworm, Bombyx mori. Insect Mol Biol 18: 71-75.
32. Yun EY, Lee JK, Kwon OY, Hwang JS, Kim I, et al. (2009) Bombyx mori transferrin: genomic structure, expression and antimicrobial activity of recombinant protein. Dev Comp Immunol 33: 1064-1069.
33. Cheng TC, Zhang YL, Liu C, Xu PZ, Gao ZH, et al. (2008) Identification and analysis of Toll-related genes in the domesticated silkworm, Bombyx mori. Dev Comp Immunol 32: 464-475.
34. Chawla G, Sokol NS, (2011) MicroRNAs in Drosophila development. Int Rev Cell Mol Biol 286: 1-65.
35. Simon-Mateo C, Garcia JA, (2006) MicroRNA-guided processing impairs Plum pox virus replication, but the virus readily evolves to escape this silencing mechanism. J Virol 80: 2429-2436.
36. Padmanabhan C, Zhang X, Jin H, (2009) Host small RNAs are big contributors to plant innate immunity. Curr Opin Plant Biol 12: 465-472.
37. Mead EA, Tu Z, (2008) Cloning, characterization, and expression of microRNAs from the Asian malaria mosquito, Anopheles stephensi. BMC Genomics 9: 244.
38. Wu P, Wang X, Qin GX, Liu T, Jiang YF, et al. (2011) Microarray analysis of the gene expression profile in the midgut of silkworm infected with cytoplasmic polyhedrosis virus. Mol Biol Rep. 38: 333-341.
39. Shin C, Nam JW, Farh KK, Chiang HR, Shkumatava A, et al. (2010) Expanding the microRNA targeting code: functional sites with centered pairing. Mol Cell 38: 789-802.
40. Brodersen P, Voinnet O, (2009) Revisiting the principles of microRNA target recognition and mode of action. Nat Rev Mol Cell Biol 10: 141-148.
41. Liu S, Zhang L, Li Q, Zhao P, Duan J, et al. (2009) MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori). BMC Genomics 10: 455.
42. Eun SH, Stoiber PM, Wright HJ, McMurdie KE, Choi CH, et al. (2013) MicroRNAs downregulate Bag of marbles to ensure proper terminal differentiation in the Drosophila male germline. Development 140: 23-30.
43. Bryant B, Macdonald W, Raikhel AS, (2010) microRNA miR-275 is indispensable for blood digestion and egg development in the mosquito Aedes aegypti. Proc Natl Acad Sci U S A. 107: 22391-22398.
44. Varghese J, Cohen SM, (2007) MicroRNA miR-14 acts to modulate a positive autoregulatory loop controlling steroid hormone signaling in Drosophila. Genes Dev 21: 2277-2282.
45. Varghese J, Lim SF, Cohen SM, (2010) Drosophila miR-14 regulates insulin production and metabolism through its target, sugarbabe. Genes Dev 24: 2748-2753.
46. Kumarswamy R, Chandna S, (2010) Inhibition of microRNA-14 contributes to actinomycin-D-induced apoptosis in the Sf9 insect cell line. Cell Biol Int 34: 851-857.
47. Xu P, Vernooy SY, Guo M, Hay BA, (2003) The Drosophila microRNA Mir-14 suppresses cell death and is required for normal fat metabolism. Curr Biol 13: 790-795.
48. Narayan K, (2004) Insect defence: its impact on microbial control of insect pests. Curr Sci 86: 800-814.
49. Clarke TE, Clem RJ, (2002) Lack of involvement of haemocytes in the establishment and spread of infection in Spodoptera frugiperda larvae infected with the baculovirus Autographa californica M nucleopolyhedrovirus by intrahaemocoelic injection. J Gen Virol 83: 1565-1572.
50. Yao HP, Wu XF, Gokulamma K, (2006) Antiviral activity in the mulberry silkworm, Bombyx mori. J Zhejiang Univ Sci A (China) 7: 350-356.
51. Biryukova I, Asmar J, Abdesselem H, Heitzler P, (2009) Drosophila mir-9a regulates wing development via fine-tuning expression of the LIM only factor, dLMO. Dev Biol 327: 487-496.
52. Bejarano F, Smibert P, Lai EC, (2010) miR-9a prevents apoptosis during wing development by repressing Drosophila LIM-only. Dev Biol 338: 63-73.
53. Zhu H, Gunaratne PH, Roman GW, Gunaratne GH, (2010) A theory for the arrangement of sensory organs in Drosophila. Chaos 20: 013132.
54. Li Y, Wang F, Lee JA, Gao FB, (2006) MicroRNA-9a ensures the precise specification of sensory organ precursors in Drosophila. Genes Dev 20: 2793-2805.
55. Deng Z, Chen JF, Wang DZ, (2011) Transgenic overexpression of miR-133a in skeletal muscle. BMC Musculoskelet Disord 12: 115.
56. Wang XG, Yu JF, Zhang Y, Gong DQ, Gu ZL, (2012) Identification and characterization of microRNA from chicken adipose tissue and skeletal muscle. Poult Sci 91: 139-149.
57. Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, et al. (2012) Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta. Insect Biochem Mol Biol 42: 381-395.
58. Liu S, Li D, Li Q, Zhao P, Xiang Z, et al. (2010) MicroRNAs of Bombyx mori identified by Solexa sequencing. BMC Genomics. 11: 148.
59. Zhou H, Huang X, Cui H, Luo X, Tang Y, et al. (2010) miR-155 and its starform partner miR-155* cooperatively regulate type I interferon production by human plasmacytoid dendritic cells. Blood 116: 5885-5894.
60. Ro S, Park C, Young D, Sanders KM, Yan W, (2007) Tissue-dependent paired expression of miRNAs. Nucleic Acids Res 35: 5944-5953.
61. Okamura K, Phillips MD, Tyler DM, Duan H, Chou YT, et al. (2008) The regulatory activity of microRNA* species has substantial influence on microRNA and 3′UTR evolution. Nat Struct Mol Biol 15: 354-363.
62. Packer AN, Xing Y, Harper SQ, Jones L, Davidson BL, (2008) The bifunctional microRNA miR-9/miR-9* regulates REST and CoREST and is downregulated in Huntington's disease. J Neurosci 28: 14341-14346.
63. Tsang WP, Kwok TT, (2009) The miR-18a* microRNA functions as a potential tumor suppressor by targeting on K-Ras. Carcinogenesis 30: 953-959.
64. Manavella P, Koenig D, Rubio-Somoza I, Burbano HA, Becker C, et al.(2012) Tissue-specific silencing of Arabidopsis thaliana SUVH8 by miR171a star. Plant Physiol.
65. Martin EC, Elliott S, Rhodes LV, Antoon JW, Fewell C, et al. (2012) Preferential star strand biogenesis of pre-miR-24-2 targets PKC-alpha and suppresses cell survival in MCF-7 breast cancer cells. Mol Carcinog. doi: 10.1002/mc.21946.