Chryseobacterium limigenitum sp. nov., isolated from dehydrated sludge

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 107, Issue 6, 2015, Pages 1633-1638

  Kämpfer, Peter ^a   Trček, Janja ^b   Skok, Barbara ^b   Šorgo, Andrej ^b   Glaeser, Stefanie P ^a  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b UNIVERSITY OF MARIBOR   (Slovenia)

Author keywords

Chryseobacterium limigenitum; Dehydrated sludge; Municipal sewage plant; Taxonomy

Indexed keywords

BACTERIAL DNA; FATTY ACID; PIGMENT; RIBOSOME DNA; RNA 16S; SEWAGE;

BACTERIUM IDENTIFICATION; CHEMISTRY; CHRYSEOBACTERIUM; CLASSIFICATION; CLUSTER ANALYSIS; CYTOSOL; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PHYSIOLOGY; SEWAGE;

BACTERIAL TYPING TECHNIQUES; CHRYSEOBACTERIUM; CLUSTER ANALYSIS; CYTOSOL; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PIGMENTS, BIOLOGICAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE;

EID: 84939953180     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-015-0434-2     Document Type: Article

References (24)

1. Brosius J, Palmer ML, Kennedy PJ, Noller HF (1978) Complete nucleotide-sequence of a 16S ribosomal-RNA gene from Escherichia coli. PNAS 75:4801–4805
2. Chen XY, Zhao R, Chen ZL, Liu L, Li XD, Li YH (2015) Chryseobacterium polytrichastri sp. nov., isolated from a moss (Polytrichastrum formosum), and emended description of the genus Chryseobacterium. Antonie van Leeuwenhoek 107(2):403–410
3. Felsenstein J (1985) Confidence limits of phylogenies: an approach using the bootstrap. Evolution 39:783–791
4. Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author, Department of Genome Sciences, University of Washington, Seattle
5. Gerhardt P, Murray RGE, Wood WA, Krieg NR (1994) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC
6. Kämpfer P (1990) Evaluation of the Titertek-Enterobac-automated system (TTE-AS) for identification of members of the family Enterobacteriaceae. Zentralbl Bakteriol 273:164–172
7. Kämpfer P, Kroppenstedt RM (1996) Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42:989–1005
8. Kämpfer P, Steiof M, Dott W (1991) Microbiological characterisation of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21:227–251
9. Kämpfer P, Dreyer U, Neef A, Dott W, Busse HJ (2003) Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol 53:93–97
10. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721
11. Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar BA, Lai T, Steppi S, Jobb G, Forster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, Konig A, Liss T, Lussmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer KH (2004) ARB: a software environment for sequence data. Nucleic Acid Res 32:1363–1371
12. Montero-Calasanz MD, Göker M, Rohde M, Spröer C, Schumann P, Busse H-J, Schmid M, Tindall BJ, Klenk HP, Camacho M (2013) Chryseobacterium hispalense sp. nov., a plant growth-promoting bacterium isolated from a rainwater pond in an olive plant nursery and emendation of the species Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium. Int J Syst Evol Microbiol 63:4386–4395
13. Pires C, Carvalho MF, De Marco P, Magan N, Castro PM (2007) Chryseobacterium palustre sp. nov. and Chryseobacterium humi sp. nov., isolated from industrially contaminated sediments. Int J Syst Evol Microbiol 60:402–407
14. Pitcher DG, Saunders NA (1989) Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8:151–156
15. Quan ZX, Kim KK, Kim MK, Jin L, Lee ST (2007) Chryseobacterium caeni sp. nov., isolated from bioreactor sludge. Int J Syst Evol Microbiol 57:141–145
16. AL. In: Staley JT, Bryant MP, Pfennig N, Holt JC (eds) Bergey’s manual of systematic bacteriology, vol 3. Williams & Wilkins, Baltimore, pp 2011–2073
17. Smibert RM, Krieg NR (1994) Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, pp 607–654
18. Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690
19. Szoboszlay S, Atzél B, Kukolya J, Tóth EM, Márialigeti K, Schumann P, Kriszt B (2008) Chryseobacterium hungaricum sp. nov., isolated from hydrocarbon-contaminated soil. Int J Syst Evol Microbiol 58:2748–2754
20. Vandamme P, Bernardet J-F, Segers P, Kersters K, Holmes B (1994) New perspectives in the classification of the flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int J Syst Bacteriol 44:827–831
21. Yarza P, Richter M, Peplies J, Euzéby J, Amann R, Schleifer KH et al (2008) The all-species living tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31:241–250
22. Yoon JH, Kang SJ, Oh TK (2007) Chryseobacterium daeguense sp. nov., isolated from wastewater of a textile dye works. Int J Syst Evol Microbiol 57:1355–1359
23. Zhou Y, Dong J, Wang X, Huang X, Zhang KY, Zhang YQ, Guo YF, Lai R, Li WJ (2007) Chryseobacterium flavum sp. nov., isolated from polluted soil. Int J Syst Evol Microbiol 57:1765–1769
24. Ziemke F, Höfle MG, Lalucat J, Rosselló-Mora R (1998) Reclassification of Shewanella putrefaciens Owen’s genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48:179–186