Weighted morphology: a new approach towards phylogenetic assessment of Nostocales (Cyanobacteria)

Protoplasma

Volumn 252, Issue 1, 2015, Pages 145-163

  Mishra, Swati ^a   Bhargava, Poonam ^b   Adhikary, Siba Prasad ^c   Pradeep, Anubhav ^d   Rai, Lal Chand ^a  

^a BANARAS HINDU UNIVERSITY   (India)

^b Birla Institute of Scientific Research   (India)

^c VISVA BHARATI UNIVERSITY   (India)

^d UNIVERSITY OF KENTUCKY   (United States)

Author keywords

16S rDNA; Cyanobacteria; Neighbor joining; Nostocales; Phylogeny

Indexed keywords

CLASSIFICATION; CYANOBACTERIUM; PHYLOGENY;

CYANOBACTERIA; PHYLOGENY;

EID: 84939892465     PISSN: 0033183X     EISSN: 16156102     Source Type: Journal    
DOI: 10.1007/s00709-014-0629-9     Document Type: Article

References (41)

1. Aguilera G, Mirande JM (2005) A new species of Jenynsia (Cyprinodontiformes: Anablepidae) from North Western Argentina and its phylogenetic relationships. Zootaxa 1096:29–39
2. Anagnostidis K, Komarek J (1985) Modern approach to the classification system of the Cyanophytes. 1: Introduction. Arch of Hydrobiol 71(Algol Stud38/39):291–302
3. Anagnostidis K, Komárek J (1988) Modern approach to the classification system of the Cyanophytes 3: Oscillatoriales. Algol Stud 50(53):327–472
4. Anagnostidis K, Komárek J (1990) Modern approach to the classification system of cyanophytes. Teil 5- Stigonematales. Algol Stud 59:1–73
5. Bornet E, Flahault C (1888) Revision des Nostocacées hétérocystées. Ann Sci Nat Bot 7:223–224
6. Bourelly P (1970) Les algues d’eaudouce iii. N Boubee, Cie Paris, 512
7. nd, pp.473-600. Springer-Verlag 1, New York
8. Collucci E, Anice M, Sallum M (2007) Cladistic analysis of the subgenus Anopheles (Anopheles) Meigen (Diptera: Culicidae) based on morphological characters 277. Mem Inst Oswaldo Cruz, Rio de Janeiro 102:277–291
9. Desikachary TV (1959) Cyanophyta. Indian Council Agricultural Research, New Delhi
10. Farris JS (1969) A successive approximations approach to character weighting. Syst Zool 18:374–385
11. Farris JS (1983) The logical basis of phylogenetic analysis. In: Platnick NI, Funk VA (eds) Advances in Cladistics II. Columbia University Press, New York, pp 7–36
12. Farris JS (1989) The retention index and the rescaled consistency index. Cladistics 5:417–419
13. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
14. Fritsch FE (1945) The structure and the reproduction of algae. Cambridge University Press; II, Cambridge
15. Geitler L (1932) Cyanophyceae InRabenhorst’s Kryptogamen flora. Akademische Verlagsgesellschaft, Leipzig, pp 1–1196
16. Goloboff PA (1993) Estimating character weights during tree search. Cladistics 9:83–91
17. Goloboff PA, Carpenter JM, Arias J, Miranda Esquivel DR (2008) Weighting against homoplasy improves phylogenetic analysis of morphological data sets. Cladistics 24:758–773
18. Gomont M (1892) Monographie des Oscillariées Nostocacées homocystées. Ann Sci Nat, Bot, Séries 7(15):263–368
19. Gugger MF, Hoffman L (2004) Polyphyly of true branching cyanobacteria (Stigonematales). Int J Syst Evol Microbiol 54:349–357
20. Gugger M, Lyra C, Henriksen P, Coute’ A, Humbert JF, Sivonen S (2002) Phylogenetic comparison of the cyanobacterial genera Anabaena and Aphanizomenon. Int J Syst Evol Microbiol 52:1867–1880
21. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
22. Iteman I, Rippka R, Tandeau De Marsac N, Herdman M (2002) rDNA analyses of planktonic heterocystous cyanobacteria, including members of the genera Anabaenopsis and Cyanospira. Microbiol1 48:481–496
23. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Muntu HN (ed) Mammalian protein metabolism. Academic, New York, pp 21–1321
24. Komárek J, Anagnostidis K (1989) Modern approach to the classification system of Cyanophytes 4 - Nostocales. Arch Hydrobiol Suppl 82:247–345
25. Komárek J, Jan, M (2012).An update to modern taxonomy (2011) of freshwater planktic heterocytous cyanobacteria. Hydrobiol, 1–25.
26. Kützing FT (1843) Phycologia generalis or anatomy, physiology, and the system customer Tange with 80 color printed boards, drawn and gravity by the author. F. A. Brockhaus, Leipzig
27. Lanyon SM (1987) Jackknifing and bootstrapping: important “new” statistical techniques for ornithologists. The Am Ornithol’ Union 104:144–146
28. Lehtimäki J, Lyra C, Suomalainen S, Sundman P, Rouhiainen L, Paulin L, Salkinoja-Salonen M, Sivonen K (2000) Characterization of Nodularia strains, cyanobacteria from brackish waters, by genotypic and phenotypic methods. Int J Syst Evol Microbiol 50:1043–1053
29. Lyra C, Suomalainen S, Gugger M, Vezie C, Sundman PM, Sivonen K (2001) Molecular characterization of planktic cyanobacteria of Anabaena, Aphanizomenon, Microcystis and Planktothrix genera. Int J Syst and Evol Microbiol 51:513–526
30. Maddison DR, Swofford DL, Maddison WP (1997) NEXUS: An extensible file format for systematic information. Syst Biol46:590–621.
31. Nandi OI, Chase MW, Endress PK (1998).A combined cladistic analysis of angiosperms using rbcL and non-molecular data sets. Ann of the Missouri Bot Gard 85: 137–214.
32. Nixon KC (1999) The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 15:407–414
33. Nye TMW, Liò P, Gilks WR (2006) A novel algorithm and web-based tool for comparing two alternative phylogenetic trees. Bioinformatics 22:117–119
34. Ramirez MJ (2003) The spider subfamily Amaurobioidinae (Aranae, Anyphaenidae): a phylogenetic revision at the generic level. BullAmer Mus Nat Hist 277:1–262
35. Rippka R, DeReuelles J, Waterbury JB, Herdman M, Stanier R (1979) Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J Gen Microbiol 111:1–61
36. Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
37. Sihvonen LM, Lyra C, Fewer DP, Rajaniemi-Wacklin P, JM L k, Wahlsten M, Sivonen K (2007) Strains of the cyanobacterial genera Calothrix and Rivularia isolated from the Baltic Sea display cryptic diversity and are distantly related to Gloeotrichia and Tolypothrix. FEMS Microbiol Ecol 61:74–84
38. Singh RN (1942).Wollea Bharadwajae sp. nov. and it’s Autecology. Ann Bot6:593–606.
39. Tamura KD, PetersonN PG, Stecher Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance and maximum parsimony methods. Mol Biol Evol 28:2731–2739
40. Thompson JD, Toby J, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl A Res 25:4876–4882
41. Zapomělová E (2008) Morphological variability in selected heterocystous cyanobacterial strains as a response to varied temperature, light intensity and medium composition. Folia Microbiol 53(4):333–341