-
1
-
-
78449296237
-
Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
-
Benson AK, et al. (2010) Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc Natl Acad Sci USA 107(44):18933-18938.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.44
, pp. 18933-18938
-
-
Benson, A.K.1
-
2
-
-
77955602581
-
Through ageing, and beyond: Gut microbiota and inflammatory status in seniors and centenarians
-
Biagi E, et al. (2010) Through ageing, and beyond: Gut microbiota and inflammatory status in seniors and centenarians. PLoS One 5(5):e10667.
-
(2010)
PLoS One
, vol.5
, Issue.5
-
-
Biagi, E.1
-
3
-
-
78049522796
-
Long-term impacts of antibiotic exposure on the human intestinal microbiota
-
Jernberg C, Löfmark S, Edlund C, Jansson JK (2010) Long-term impacts of antibiotic exposure on the human intestinal microbiota. Microbiology 156(Pt 11):3216-3223.
-
(2010)
Microbiology
, vol.156
, Issue.11
, pp. 3216-3223
-
-
Jernberg, C.1
Löfmark, S.2
Edlund, C.3
Jansson, J.K.4
-
4
-
-
84903643290
-
Gut microbioma population: An indicator really sensible to any change in age, diet, metabolic syndrome, and life-style
-
Annalisa N, et al. (2014) Gut microbioma population: An indicator really sensible to any change in age, diet, metabolic syndrome, and life-style. Mediators Inflamm 2014: 901308.
-
(2014)
Mediators Inflamm
, vol.2014
, pp. 901308
-
-
Annalisa, N.1
-
5
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu GD, et al. (2011) Linking long-term dietary patterns with gut microbial enterotypes. Science 334(6052):105-108.
-
(2011)
Science
, vol.334
, Issue.6052
, pp. 105-108
-
-
Wu, G.D.1
-
6
-
-
84881484788
-
Cohabiting family members share microbiota with one another and with their dogs
-
Song SJ, et al. (2013) Cohabiting family members share microbiota with one another and with their dogs. eLife 2:e00458.
-
(2013)
eLife
, vol.2
-
-
Song, S.J.1
-
7
-
-
84882703646
-
The gut microbiota and obesity: From correlation to causality
-
Zhao L (2013) The gut microbiota and obesity: From correlation to causality. Nat Rev Microbiol 11(9):639-647.
-
(2013)
Nat Rev Microbiol
, vol.11
, Issue.9
, pp. 639-647
-
-
Zhao, L.1
-
8
-
-
84889090313
-
Diet, the human gut microbiota, and IBD
-
Wu GD, Bushmanc FD, Lewis JD (2013) Diet, the human gut microbiota, and IBD. Anaerobe 24:117-120.
-
(2013)
Anaerobe
, vol.24
, pp. 117-120
-
-
Wu, G.D.1
Bushmanc, F.D.2
Lewis, J.D.3
-
9
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
David LA, et al. (2014) Diet rapidly and reproducibly alters the human gut microbiome. Nature 505(7484):559-563.
-
(2014)
Nature
, vol.505
, Issue.7484
, pp. 559-563
-
-
David, L.A.1
-
10
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
De Filippo C, et al. (2010) Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci USA 107(33):14691-14696.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.33
, pp. 14691-14696
-
-
De Filippo, C.1
-
11
-
-
67650473912
-
Regulation of myocardial ketone body metabolism by the gut microbiota during nutrient deprivation
-
Crawford PA, et al. (2009) Regulation of myocardial ketone body metabolism by the gut microbiota during nutrient deprivation. Proc Natl Acad Sci USA 106(27): 11276-11281.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.27
, pp. 11276-11281
-
-
Crawford, P.A.1
-
12
-
-
77958490531
-
Postprandial remodeling of the gut microbiota in Burmese pythons
-
Costello EK, Gordon JI, Secor SM, Knight R (2010) Postprandial remodeling of the gut microbiota in Burmese pythons. ISME J 4(11):1375-1385.
-
(2010)
ISME J
, vol.4
, Issue.11
, pp. 1375-1385
-
-
Costello, E.K.1
Gordon, J.I.2
Secor, S.M.3
Knight, R.4
-
13
-
-
84864509753
-
The mammalian circadian timing system: Synchronization of peripheral clocks
-
Saini C, Suter DM, Liani A, Gos P, Schibler U (2011) The mammalian circadian timing system: Synchronization of peripheral clocks. Cold Spring Harb Symp Quant Biol 76: 39-47.
-
(2011)
Cold Spring Harb Symp Quant Biol
, vol.76
, pp. 39-47
-
-
Saini, C.1
Suter, D.M.2
Liani, A.3
Gos, P.4
Schibler, U.5
-
14
-
-
50249100374
-
The meter of metabolism
-
Green CB, Takahashi JS, Bass J (2008) The meter of metabolism. Cell 134(5):728-742.
-
(2008)
Cell
, vol.134
, Issue.5
, pp. 728-742
-
-
Green, C.B.1
Takahashi, J.S.2
Bass, J.3
-
15
-
-
84890406383
-
Knitting up the raveled sleave of care
-
Yang G, et al. (2013) Knitting up the raveled sleave of care. Sci Transl Med 5(212): 212rv3.
-
(2013)
Sci Transl Med
, vol.5
, Issue.212
-
-
Yang, G.1
-
16
-
-
79959404050
-
Evolution of time-keeping mechanisms: Early emergence and adaptation to photoperiod
-
Hut RA, Beersma DG (2011) Evolution of time-keeping mechanisms: Early emergence and adaptation to photoperiod. Philos Trans R Soc Lond B Biol Sci 366(1574): 2141-2154.
-
(2011)
Philos Trans R Soc Lond B Biol Sci
, vol.366
, Issue.1574
, pp. 2141-2154
-
-
Hut, R.A.1
Beersma, D.G.2
-
17
-
-
1942435934
-
Precise circadian clocks in prokaryotic cyanobacteria
-
Johnson CH (2004) Precise circadian clocks in prokaryotic cyanobacteria. Curr Issues Mol Biol 6(2):103-110.
-
(2004)
Curr Issues Mol Biol
, vol.6
, Issue.2
, pp. 103-110
-
-
Johnson, C.H.1
-
18
-
-
0033104504
-
Physical interactions among circadian clock proteins KaiA, KaiB and KaiC in cyanobacteria
-
Iwasaki H, Taniguchi Y, Ishiura M, Kondo T (1999) Physical interactions among circadian clock proteins KaiA, KaiB and KaiC in cyanobacteria. EMBO J 18(5):1137-1145.
-
(1999)
EMBO J
, vol.18
, Issue.5
, pp. 1137-1145
-
-
Iwasaki, H.1
Taniguchi, Y.2
Ishiura, M.3
Kondo, T.4
-
19
-
-
84908302963
-
Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis
-
Thaiss CA, et al. (2014) Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis. Cell 159(3):514-529.
-
(2014)
Cell
, vol.159
, Issue.3
, pp. 514-529
-
-
Thaiss, C.A.1
-
20
-
-
84919687733
-
Diet and feeding pattern affect the diurnal dynamics of the gut microbiome
-
Zarrinpar A, Chaix A, Yooseph S, Panda S (2014) Diet and feeding pattern affect the diurnal dynamics of the gut microbiome. Cell Metab 20(6):1006-1017.
-
(2014)
Cell Metab
, vol.20
, Issue.6
, pp. 1006-1017
-
-
Zarrinpar, A.1
Chaix, A.2
Yooseph, S.3
Panda, S.4
-
21
-
-
77957266573
-
JTK-CYCLE: An efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets
-
Hughes ME, Hogenesch JB, Kornacker K (2010) JTK-CYCLE: An efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets. J Biol Rhythms 25(5):372-380.
-
(2010)
J Biol Rhythms
, vol.25
, Issue.5
, pp. 372-380
-
-
Hughes, M.E.1
Hogenesch, J.B.2
Kornacker, K.3
-
22
-
-
33749031807
-
Molecular components of the mammalian circadian clock
-
Ko CH, Takahashi JS (2006) Molecular components of the mammalian circadian clock. Hum Mol Genet 15(Spec No 2):R271-R277.
-
(2006)
Hum Mol Genet
, vol.15
, pp. R271-R277
-
-
Ko, C.H.1
Takahashi, J.S.2
-
23
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
Lozupone C, Knight R (2005) UniFrac: A new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71(12):8228-8235.
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.12
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
24
-
-
84991526597
-
EMPeror: A tool for visualizing high-throughput microbial community data
-
16-217X-2-16
-
Vazquez-Baeza Y, Pirrung M, Gonzalez A, Knight R (2013) EMPeror: A tool for visualizing high-throughput microbial community data. Gigascience 2(1):16-217X-2-16.
-
(2013)
Gigascience
, vol.2
, Issue.1
-
-
Vazquez-Baeza, Y.1
Pirrung, M.2
Gonzalez, A.3
Knight, R.4
-
25
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7(5):335-336.
-
(2010)
Nat Methods
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
-
26
-
-
80053102580
-
Disrupting the circadian clock: Gene-specific effects on aging, cancer, and other phenotypes
-
Yu EA, Weaver DR (2011) Disrupting the circadian clock: Gene-specific effects on aging, cancer, and other phenotypes. Aging (Albany, NY) 3(5):479-493.
-
(2011)
Aging (Albany, NY)
, vol.3
, Issue.5
, pp. 479-493
-
-
Yu, E.A.1
Weaver, D.R.2
-
27
-
-
84870859377
-
Obesity in mice with adipocyte-specific deletion of clock component Arntl
-
Paschos GK, et al. (2012) Obesity in mice with adipocyte-specific deletion of clock component Arntl. Nat Med 18(12):1768-1777.
-
(2012)
Nat Med
, vol.18
, Issue.12
, pp. 1768-1777
-
-
Paschos, G.K.1
-
29
-
-
55249108031
-
Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont
-
Martens EC, Chiang HC, Gordon JI (2008) Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe 4(5):447-457.
-
(2008)
Cell Host Microbe
, vol.4
, Issue.5
, pp. 447-457
-
-
Martens, E.C.1
Chiang, H.C.2
Gordon, J.I.3
-
30
-
-
15544376418
-
Glycan foraging in vivo by an intestine-adapted bacterial symbiont
-
Sonnenburg JL, et al. (2005) Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307(5717):1955-1959.
-
(2005)
Science
, vol.307
, Issue.5717
, pp. 1955-1959
-
-
Sonnenburg, J.L.1
-
31
-
-
0021241176
-
Phase shifts of circadian rhythms in activity entrained to food access
-
Stephan FK (1984) Phase shifts of circadian rhythms in activity entrained to food access. Physiol Behav 32(4):663-671.
-
(1984)
Physiol Behav
, vol.32
, Issue.4
, pp. 663-671
-
-
Stephan, F.K.1
-
32
-
-
84931275600
-
Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1
-
Curtis AM, et al. (2015) Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1. Proc Natl Acad Sci USA 112(23):7231-7236.
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, Issue.23
, pp. 7231-7236
-
-
Curtis, A.M.1
-
33
-
-
84867616398
-
High fat diet-induced gut microbiota exacerbates inflammation and obesity in mice via the TLR4 signaling pathway
-
Kim KA, Gu W, Lee IA, Joh EH, Kim DH (2012) High fat diet-induced gut microbiota exacerbates inflammation and obesity in mice via the TLR4 signaling pathway. PLoS One 7(10):e47713.
-
(2012)
PLoS One
, vol.7
, Issue.10
-
-
Kim, K.A.1
Gu, W.2
Lee, I.A.3
Joh, E.H.4
Kim, D.H.5
-
34
-
-
84902705621
-
The murine appendiceal microbiome is altered in spontaneous colitis and its pathological progression
-
25-4749-6-25. eCollection 2014
-
Alkadhi S, Kunde D, Cheluvappa R, Randall-Demllo S, Eri R (2014) The murine appendiceal microbiome is altered in spontaneous colitis and its pathological progression. Gut Pathog 6:25-4749-6-25. eCollection 2014.
-
(2014)
Gut Pathog
, vol.6
-
-
Alkadhi, S.1
Kunde, D.2
Cheluvappa, R.3
Randall-Demllo, S.4
Eri, R.5
-
35
-
-
84859793930
-
Comprehensive analysis of the bacterial content of stool from patients with chronic pouchitis, normal pouches, or familial adenomatous polyposis pouches
-
Tannock GW, et al. (2012) Comprehensive analysis of the bacterial content of stool from patients with chronic pouchitis, normal pouches, or familial adenomatous polyposis pouches. Inflamm Bowel Dis 18(5):925-934.
-
(2012)
Inflamm Bowel Dis
, vol.18
, Issue.5
, pp. 925-934
-
-
Tannock, G.W.1
-
36
-
-
84900354364
-
Changes of fecal flora and its correlation with inflammatory indicators in patients with inflammatory bowel disease
-
Zhang T, et al. (2013) [Changes of fecal flora and its correlation with inflammatory indicators in patients with inflammatory bowel disease]. Nan Fang Yi Ke Da Xue Xue Bao 33(10):1474-1477.
-
(2013)
Nan Fang Yi Ke Da Xue Xue Bao
, vol.33
, Issue.10
, pp. 1474-1477
-
-
Zhang, T.1
-
37
-
-
84917706464
-
Dynamics of gut microbiota in autoimmune lupus
-
Zhang H, Liao X, Sparks JB, Luo XM (2014) Dynamics of gut microbiota in autoimmune lupus. Appl Environ Microbiol 80(24):7551-7560.
-
(2014)
Appl Environ Microbiol
, vol.80
, Issue.24
, pp. 7551-7560
-
-
Zhang, H.1
Liao, X.2
Sparks, J.B.3
Luo, X.M.4
-
38
-
-
84908503813
-
Propensity to high-fat diet-induced obesity in mice is associated with the indigenous opportunistic bacteria on the interior of Peyer's patches
-
Qiao Y, Sun J, Xie Z, Shi Y, Le G (2014) Propensity to high-fat diet-induced obesity in mice is associated with the indigenous opportunistic bacteria on the interior of Peyer's patches. J Clin Biochem Nutr 55(2):120-128.
-
(2014)
J Clin Biochem Nutr
, vol.55
, Issue.2
, pp. 120-128
-
-
Qiao, Y.1
Sun, J.2
Xie, Z.3
Shi, Y.4
Le, G.5
-
39
-
-
40349113425
-
The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis
-
McKenna P, et al. (2008) The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis. PLoS Pathog 4(2):e20.
-
(2008)
PLoS Pathog
, vol.4
, Issue.2
, pp. e20
-
-
McKenna, P.1
-
40
-
-
84882610339
-
Gender bias in autoimmunity is influenced by microbiota
-
Yurkovetskiy L, et al. (2013) Gender bias in autoimmunity is influenced by microbiota. Immunity 39(2):400-412.
-
(2013)
Immunity
, vol.39
, Issue.2
, pp. 400-412
-
-
Yurkovetskiy, L.1
-
41
-
-
84905276988
-
Individual diet has sex-dependent effects on vertebrate gut microbiota
-
Bolnick DI, et al. (2014) Individual diet has sex-dependent effects on vertebrate gut microbiota. Nat Commun 5:4500.
-
(2014)
Nat Commun
, vol.5
, pp. 4500
-
-
Bolnick, D.I.1
-
42
-
-
84874357602
-
Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity
-
Markle JG, et al. (2013) Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity. Science 339(6123):1084-1088.
-
(2013)
Science
, vol.339
, Issue.6123
, pp. 1084-1088
-
-
Markle, J.G.1
-
43
-
-
33751074136
-
Quantitative PCR assays for mouse enteric flora reveal strain-dependent differences in composition that are influenced by the microenvironment
-
Deloris Alexander A, et al. (2006) Quantitative PCR assays for mouse enteric flora reveal strain-dependent differences in composition that are influenced by the microenvironment. Mamm Genome 17(11):1093-1104.
-
(2006)
Mamm Genome
, vol.17
, Issue.11
, pp. 1093-1104
-
-
Deloris Alexander, A.1
-
44
-
-
0035133496
-
Fitting multivariate models to community data: A comment on distance-based redundancy analysis
-
McArdle BH, Anderson MJ (2001) Fitting multivariate models to community data: A comment on distance-based redundancy analysis. Ecology 82(1):290-297.
-
(2001)
Ecology
, vol.82
, Issue.1
, pp. 290-297
-
-
McArdle, B.H.1
Anderson, M.J.2
-
45
-
-
75249107844
-
PyNAST: A flexible tool for aligning sequences to a template alignment
-
Caporaso JG, et al. (2010) PyNAST: A flexible tool for aligning sequences to a template alignment. Bioinformatics 26(2):266-267.
-
(2010)
Bioinformatics
, vol.26
, Issue.2
, pp. 266-267
-
-
Caporaso, J.G.1
-
46
-
-
67649327176
-
FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix
-
Price MN, Dehal PS, Arkin AP (2009) FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol 26(7):1641-1650.
-
(2009)
Mol Biol Evol
, vol.26
, Issue.7
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
|