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Volumn 16, Issue 1, 2015, Pages

DNA methylation and gene expression dynamics during spermatogonial stem cell differentiation in the early postnatal mouse testis

Author keywords

5 hydroxymethylcytosine; DNA methylation; Non CG methylation; Prospermatogonia; Spermatogenesis; Spermatogonia; Spermatogonial stem cell

Indexed keywords

5 HYDROXYMETHYLCYTOSINE; 5 METHYLCYTOSINE; OCTAMER TRANSCRIPTION FACTOR 4;

EID: 84939541148     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-1833-5     Document Type: Article
Times cited : (111)

References (77)
  • 1
    • 0037150714 scopus 로고    scopus 로고
    • Germline stem cell transplantation and transgenesis
    • Brinster RL. Germline stem cell transplantation and transgenesis. Science. 2002;296:2174-6.
    • (2002) Science , vol.296 , pp. 2174-2176
    • Brinster, R.L.1
  • 2
    • 0027960421 scopus 로고
    • Germline transmission of donor haplotype following spermatogonial transplantation
    • Brinster RL, Avarbock MR. Germline transmission of donor haplotype following spermatogonial transplantation. Proc Natl Acad Sci U S A. 1994;91:11303-7.
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 11303-11307
    • Brinster, R.L.1    Avarbock, M.R.2
  • 3
    • 0027942611 scopus 로고
    • Spermatogenesis following male germ-cell transplantation
    • Brinster RL, Zimmermann JW. Spermatogenesis following male germ-cell transplantation. Proc Natl Acad Sci U S A. 1994;91:11298-302.
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 11298-11302
    • Brinster, R.L.1    Zimmermann, J.W.2
  • 5
    • 33646696207 scopus 로고    scopus 로고
    • The first round of mouse spermatogenesis is a distinctive program that lacks the self-renewing spermatogonia stage
    • Yoshida S, Sukeno M, Nakagawa T, Ohbo K, Nagamatsu G, Suda T, et al. The first round of mouse spermatogenesis is a distinctive program that lacks the self-renewing spermatogonia stage. Development. 2006;133:1495-505.
    • (2006) Development , vol.133 , pp. 1495-1505
    • Yoshida, S.1    Sukeno, M.2    Nakagawa, T.3    Ohbo, K.4    Nagamatsu, G.5    Suda, T.6
  • 6
    • 0344738981 scopus 로고    scopus 로고
    • Characterization of spermatogonial stem cell maturation and differentiation in neonatal mice
    • McLean DJ, Friel PJ, Johnston DS, Griswold MD. Characterization of spermatogonial stem cell maturation and differentiation in neonatal mice. Biol Reprod. 2003;69:2085-91.
    • (2003) Biol Reprod , vol.69 , pp. 2085-2091
    • McLean, D.J.1    Friel, P.J.2    Johnston, D.S.3    Griswold, M.D.4
  • 7
    • 1942425215 scopus 로고    scopus 로고
    • Neurogenin3 delineates the earliest stages of spermatogenesis in the mouse testis
    • Yoshida S, Takakura A, Ohbo K, Abe K, Wakabayashi J, Yamamoto M, et al. Neurogenin3 delineates the earliest stages of spermatogenesis in the mouse testis. Dev Biol. 2004;269:447-58.
    • (2004) Dev Biol , vol.269 , pp. 447-458
    • Yoshida, S.1    Takakura, A.2    Ohbo, K.3    Abe, K.4    Wakabayashi, J.5    Yamamoto, M.6
  • 10
    • 17944401554 scopus 로고    scopus 로고
    • Regulation of cell fate decision of undifferentiated spermatogonia by GDNF
    • Meng X, Lindahl M, Hyvönen ME, Parvinen M, de Rooij DG, Hess MW, et al. Regulation of cell fate decision of undifferentiated spermatogonia by GDNF. Science. 2000;287:1489-93.
    • (2000) Science , vol.287 , pp. 1489-1493
    • Meng, X.1    Lindahl, M.2    Hyvönen, M.E.3    Parvinen, M.4    Rooij, D.G.5    Hess, M.W.6
  • 11
    • 0038022640 scopus 로고    scopus 로고
    • Identification and characterization of stem cells in prepubertal spermatogenesis in mice
    • Ohbo K, Yoshida S, Ohmura M, Ohneda O, Ogawa T, Tsuchiya H, et al. Identification and characterization of stem cells in prepubertal spermatogenesis in mice. Dev Biol. 2003;258:209-25.
    • (2003) Dev Biol , vol.258 , pp. 209-225
    • Ohbo, K.1    Yoshida, S.2    Ohmura, M.3    Ohneda, O.4    Ogawa, T.5    Tsuchiya, H.6
  • 12
    • 70249140884 scopus 로고    scopus 로고
    • The RNA-binding protein NANOS2 is required to maintain murine spermatogonial stem cells
    • Sada A, Suzuki A, Suzuki H, Saga Y. The RNA-binding protein NANOS2 is required to maintain murine spermatogonial stem cells. Science. 2009;325:1394-8.
    • (2009) Science , vol.325 , pp. 1394-1398
    • Sada, A.1    Suzuki, A.2    Suzuki, H.3    Saga, Y.4
  • 13
    • 0033305716 scopus 로고    scopus 로고
    • Differential expression of c-kit in mouse undifferentiated and differentiating type A spermatogonia
    • Schrans-Stassen BH, van de Kant HJ, de Rooij DG, van Pelt AM. Differential expression of c-kit in mouse undifferentiated and differentiating type A spermatogonia. Endocrinology. 1999;140:5894-900.
    • (1999) Endocrinology , vol.140 , pp. 5894-5900
    • Schrans-Stassen, B.H.1    Kant, H.J.2    Rooij, D.G.3    Pelt, A.M.4
  • 14
    • 0026094395 scopus 로고
    • Role of c-kit in mouse spermatogenesis: identification of spermatogonia as a specific site of c-kit expression and function
    • Yoshinaga K, Nishikawa S, Ogawa M, Hayashi S, Kunisada T, Fujimoto T, et al. Role of c-kit in mouse spermatogenesis: identification of spermatogonia as a specific site of c-kit expression and function. Development. 1991;113:689-99.
    • (1991) Development , vol.113 , pp. 689-699
    • Yoshinaga, K.1    Nishikawa, S.2    Ogawa, M.3    Hayashi, S.4    Kunisada, T.5    Fujimoto, T.6
  • 15
    • 0034682540 scopus 로고    scopus 로고
    • Spermatogonial stem cell enrichment by multiparameter selection of mouse testis cells
    • Shinohara T, Orwig KE, Avarbock MR, Brinster RL. Spermatogonial stem cell enrichment by multiparameter selection of mouse testis cells. Proc Natl Acad Sci U S A. 2000;97:8346-51.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 8346-8351
    • Shinohara, T.1    Orwig, K.E.2    Avarbock, M.R.3    Brinster, R.L.4
  • 16
    • 38349100549 scopus 로고    scopus 로고
    • Epigenetic events in mammalian germ-cell development: reprogramming and beyond
    • Sasaki H, Matsui Y. Epigenetic events in mammalian germ-cell development: reprogramming and beyond. Nat Rev Genet. 2008;9:129-40.
    • (2008) Nat Rev Genet , vol.9 , pp. 129-140
    • Sasaki, H.1    Matsui, Y.2
  • 17
    • 34548705374 scopus 로고    scopus 로고
    • Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse
    • Kato Y, Kaneda M, Hata K, Kumaki K, Hisano M, Kohara Y, et al. Role of the Dnmt3 family in de novo methylation of imprinted and repetitive sequences during male germ cell development in the mouse. Hum Mol Genet. 2007;16:2272-80.
    • (2007) Hum Mol Genet , vol.16 , pp. 2272-2280
    • Kato, Y.1    Kaneda, M.2    Hata, K.3    Kumaki, K.4    Hisano, M.5    Kohara, Y.6
  • 18
    • 84875990411 scopus 로고    scopus 로고
    • High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice
    • Kobayashi H, Sakurai T, Miura F, Imai M, Mochiduki K, Yanagisawa E, et al. High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice. Genome Res. 2013;23:616-27.
    • (2013) Genome Res , vol.23 , pp. 616-627
    • Kobayashi, H.1    Sakurai, T.2    Miura, F.3    Imai, M.4    Mochiduki, K.5    Yanagisawa, E.6
  • 19
    • 84871702441 scopus 로고    scopus 로고
    • The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells
    • Seisenberger S, Andrews S, Krueger F, Arand J, Walter J, Santos F, et al. The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells. Mol Cell. 2012;48:849-62.
    • (2012) Mol Cell , vol.48 , pp. 849-862
    • Seisenberger, S.1    Andrews, S.2    Krueger, F.3    Arand, J.4    Walter, J.5    Santos, F.6
  • 20
    • 4544223707 scopus 로고    scopus 로고
    • Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L
    • Bourc'his D, Bestor TH. Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L. Nature. 2004;431:96-9.
    • (2004) Nature , vol.431 , pp. 96-99
    • Bourc'his, D.1    Bestor, T.H.2
  • 21
    • 3042584653 scopus 로고    scopus 로고
    • Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting
    • Kaneda M, Okano M, Hata K, Sado T, Tsujimoto N, Li E, et al. Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting. Nature. 2004;429:900-3.
    • (2004) Nature , vol.429 , pp. 900-903
    • Kaneda, M.1    Okano, M.2    Hata, K.3    Sado, T.4    Tsujimoto, N.5    Li, E.6
  • 22
    • 0033376795 scopus 로고    scopus 로고
    • Alterations of DNA methylation patterns in germ cells and Sertoli cells from developing mouse testis
    • Coffigny H, Bourgeois C, Ricoul M, Bernardino J, Vilain A, Niveleau A, et al. Alterations of DNA methylation patterns in germ cells and Sertoli cells from developing mouse testis. Cytogenet Cell Genet. 1999;87:175-81.
    • (1999) Cytogenet Cell Genet , vol.87 , pp. 175-181
    • Coffigny, H.1    Bourgeois, C.2    Ricoul, M.3    Bernardino, J.4    Vilain, A.5    Niveleau, A.6
  • 23
    • 84881580884 scopus 로고    scopus 로고
    • An epigenetic switch is crucial for spermatogonia to exit the undifferentiated state toward a Kit-positive identity
    • Shirakawa T, Yaman-Deveci R, Tomizawa S, Kamizato Y, Nakajima K, Sone H, et al. An epigenetic switch is crucial for spermatogonia to exit the undifferentiated state toward a Kit-positive identity. Development. 2013;140:3565-76.
    • (2013) Development , vol.140 , pp. 3565-3576
    • Shirakawa, T.1    Yaman-Deveci, R.2    Tomizawa, S.3    Kamizato, Y.4    Nakajima, K.5    Sone, H.6
  • 24
    • 84905911865 scopus 로고    scopus 로고
    • Chromatin and transcription transitions of mammalian adult germline stem cells and spermatogenesis
    • Hammoud SS, Low DH, Yi C, Carrell DT, Guccione E, Cairns BR. Chromatin and transcription transitions of mammalian adult germline stem cells and spermatogenesis. Cell Stem Cell. 2014;15:239-53.
    • (2014) Cell Stem Cell , vol.15 , pp. 239-253
    • Hammoud, S.S.1    Low, D.H.2    Yi, C.3    Carrell, D.T.4    Guccione, E.5    Cairns, B.R.6
  • 26
    • 84866919003 scopus 로고    scopus 로고
    • Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging
    • Miura F, Enomoto Y, Dairiki R, Ito T. Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging. Nucleic Acids Res. 2012;40:e136.
    • (2012) Nucleic Acids Res , vol.40
    • Miura, F.1    Enomoto, Y.2    Dairiki, R.3    Ito, T.4
  • 27
    • 84876820776 scopus 로고    scopus 로고
    • Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases
    • Shirane K, Toh H, Kobayashi H, Miura F, Chiba H, Ito T, et al. Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases. PLoS Genet. 2013;9:e1003439.
    • (2013) PLoS Genet , vol.9
    • Shirane, K.1    Toh, H.2    Kobayashi, H.3    Miura, F.4    Chiba, H.5    Ito, T.6
  • 28
    • 84857467013 scopus 로고    scopus 로고
    • Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks
    • Kobayashi H, Sakurai T, Imai M, Takahashi N, Fukuda A, Yayoi O, et al. Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks. PLoS Genet. 2012;8:e1002440.
    • (2012) PLoS Genet , vol.8
    • Kobayashi, H.1    Sakurai, T.2    Imai, M.3    Takahashi, N.4    Fukuda, A.5    Yayoi, O.6
  • 29
  • 31
    • 0036195674 scopus 로고    scopus 로고
    • Changes in Leydig cell gene expression during development in the mouse
    • O'Shaughnessy PJ, Willerton L, Baker PJ. Changes in Leydig cell gene expression during development in the mouse. Biol Reprod. 2002;66:966-75.
    • (2002) Biol Reprod , vol.66 , pp. 966-975
    • O'Shaughnessy, P.J.1    Willerton, L.2    Baker, P.J.3
  • 32
    • 79951529848 scopus 로고    scopus 로고
    • Dynamic stage-specific changes in imprinted differentially methylated regions during early mammalian development and prevalence of non-CpG methylation in oocytes
    • Tomizawa S, Kobayashi H, Watanabe T, Andrews S, Hata K, Kelsey G, et al. Dynamic stage-specific changes in imprinted differentially methylated regions during early mammalian development and prevalence of non-CpG methylation in oocytes. Development. 2011;138:811-20.
    • (2011) Development , vol.138 , pp. 811-820
    • Tomizawa, S.1    Kobayashi, H.2    Watanabe, T.3    Andrews, S.4    Hata, K.5    Kelsey, G.6
  • 34
    • 79952264847 scopus 로고    scopus 로고
    • Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
    • Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, et al. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature. 2011;471:68-73.
    • (2011) Nature , vol.471 , pp. 68-73
    • Lister, R.1    Pelizzola, M.2    Kida, Y.S.3    Hawkins, R.D.4    Nery, J.R.5    Hon, G.6
  • 35
    • 84655162785 scopus 로고    scopus 로고
    • Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains
    • Berman BP, Weisenberger DJ, Aman JF, Hinoue T, Ramjan Z, Liu Y, et al. Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains. Nat Genet. 2012;44:40-6.
    • (2012) Nat Genet , vol.44 , pp. 40-46
    • Berman, B.P.1    Weisenberger, D.J.2    Aman, J.F.3    Hinoue, T.4    Ramjan, Z.5    Liu, Y.6
  • 36
    • 84856528270 scopus 로고    scopus 로고
    • Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
    • Hon GC, Hawkins RD, Caballero OL, Lo C, Lister R, Pelizzola M, et al. Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. Genome Res. 2012;22:246-58.
    • (2012) Genome Res , vol.22 , pp. 246-258
    • Hon, G.C.1    Hawkins, R.D.2    Caballero, O.L.3    Lo, C.4    Lister, R.5    Pelizzola, M.6
  • 39
    • 84873375779 scopus 로고    scopus 로고
    • Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence
    • Meuleman W, Peric-Hupkes D, Kind J, Beaudry JB, Pagie L, Kellis M, et al. Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence. Genome Res. 2013;23:270-80.
    • (2013) Genome Res , vol.23 , pp. 270-280
    • Meuleman, W.1    Peric-Hupkes, D.2    Kind, J.3    Beaudry, J.B.4    Pagie, L.5    Kellis, M.6
  • 41
    • 84890468638 scopus 로고    scopus 로고
    • Large, male germ cell-specific hypomethylated DNA domains with unique genomic and epigenomic features on the mouse X chromosome
    • Ikeda R, Shiura H, Numata K, Sugimoto M, Kondo M, Mise N, et al. Large, male germ cell-specific hypomethylated DNA domains with unique genomic and epigenomic features on the mouse X chromosome. DNA Res. 2013;20:549-65.
    • (2013) DNA Res , vol.20 , pp. 549-565
    • Ikeda, R.1    Shiura, H.2    Numata, K.3    Sugimoto, M.4    Kondo, M.5    Mise, N.6
  • 42
    • 84875467145 scopus 로고    scopus 로고
    • Accumulation and loss of asymmetric non-CpG methylation during male germ-cell development
    • Ichiyanagi T, Ichiyanagi K, Miyake M, Sasaki H. Accumulation and loss of asymmetric non-CpG methylation during male germ-cell development. Nucleic Acids Res. 2013;41:738-45.
    • (2013) Nucleic Acids Res , vol.41 , pp. 738-745
    • Ichiyanagi, T.1    Ichiyanagi, K.2    Miyake, M.3    Sasaki, H.4
  • 43
    • 83855163995 scopus 로고    scopus 로고
    • Uncovering the role of 5-hydroxymethylcytosine in the epigenome
    • Branco MR, Ficz G, Reik W. Uncovering the role of 5-hydroxymethylcytosine in the epigenome. Nat Rev Genet. 2012;13:7-13.
    • (2012) Nat Rev Genet , vol.13 , pp. 7-13
    • Branco, M.R.1    Ficz, G.2    Reik, W.3
  • 44
    • 84879672635 scopus 로고    scopus 로고
    • Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis
    • Gan H, Wen L, Liao S, Lin X, Ma T, Liu J, et al. Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis. Nat Commun. 2013;4:1995.
    • (2013) Nat Commun , vol.4 , pp. 1995
    • Gan, H.1    Wen, L.2    Liao, S.3    Lin, X.4    Ma, T.5    Liu, J.6
  • 45
    • 84886047575 scopus 로고    scopus 로고
    • Sequence-specific microscopic visualization of DNA methylation status at satellite repeats in individual cell nuclei and chromosomes
    • Li Y, Miyanari Y, Shirane K, Nitta H, Kubota T, Ohashi H, et al. Sequence-specific microscopic visualization of DNA methylation status at satellite repeats in individual cell nuclei and chromosomes. Nucleic Acids Res. 2013;41:e186.
    • (2013) Nucleic Acids Res , vol.41
    • Li, Y.1    Miyanari, Y.2    Shirane, K.3    Nitta, H.4    Kubota, T.5    Ohashi, H.6
  • 46
    • 84874655393 scopus 로고    scopus 로고
    • Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during germ cell reprogramming
    • Yamaguchi S, Hong K, Liu R, Inoue A, Shen L, Zhang K, et al. Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during germ cell reprogramming. Cell Res. 2013;23:329-39.
    • (2013) Cell Res , vol.23 , pp. 329-339
    • Yamaguchi, S.1    Hong, K.2    Liu, R.3    Inoue, A.4    Shen, L.5    Zhang, K.6
  • 47
    • 84861221693 scopus 로고    scopus 로고
    • Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
    • Booth MJ, Branco MR, Ficz G, Oxley D, Krueger F, Reik W, et al. Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution. Science. 2012;336:934-7.
    • (2012) Science , vol.336 , pp. 934-937
    • Booth, M.J.1    Branco, M.R.2    Ficz, G.3    Oxley, D.4    Krueger, F.5    Reik, W.6
  • 48
    • 84861990517 scopus 로고    scopus 로고
    • Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome
    • Yu M, Hon GC, Szulwach KE, Song CX, Zhang L, Kim A, et al. Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome. Cell. 2012;149:1368-80.
    • (2012) Cell , vol.149 , pp. 1368-1380
    • Yu, M.1    Hon, G.C.2    Szulwach, K.E.3    Song, C.X.4    Zhang, L.5    Kim, A.6
  • 49
    • 84355163093 scopus 로고    scopus 로고
    • DNA-binding factors shape the mouse methylome at distal regulatory regions
    • Stadler MB, Murr R, Burger L, Ivanek R, Lienert F, Schöler A, et al. DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature. 2011;480:490-5.
    • (2011) Nature , vol.480 , pp. 490-495
    • Stadler, M.B.1    Murr, R.2    Burger, L.3    Ivanek, R.4    Lienert, F.5    Schöler, A.6
  • 50
    • 84864462544 scopus 로고    scopus 로고
    • A map of the cis-regulatory sequences in the mouse genome
    • Shen Y, Yue F, McCleary DF, Ye Z, Edsall L, Kuan S, et al. A map of the cis-regulatory sequences in the mouse genome. Nature. 2012;488:116-20.
    • (2012) Nature , vol.488 , pp. 116-120
    • Shen, Y.1    Yue, F.2    McCleary, D.F.3    Ye, Z.4    Edsall, L.5    Kuan, S.6
  • 51
    • 65549104157 scopus 로고    scopus 로고
    • Histone modifications at human enhancers reflect global cell-type-specific gene expression
    • Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp LF, et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature. 2009;459:108-12.
    • (2009) Nature , vol.459 , pp. 108-112
    • Heintzman, N.D.1    Hon, G.C.2    Hawkins, R.D.3    Kheradpour, P.4    Stark, A.5    Harp, L.F.6
  • 52
    • 33847334699 scopus 로고    scopus 로고
    • Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
    • Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet. 2007;39:311-8.
    • (2007) Nat Genet , vol.39 , pp. 311-318
    • Heintzman, N.D.1    Stuart, R.K.2    Hon, G.3    Fu, Y.4    Ching, C.W.5    Hawkins, R.D.6
  • 54
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009;4:44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 55
    • 33751536886 scopus 로고    scopus 로고
    • In germ cells of mouse embryonic ovaries, the decision to enter meiosis precedes premeiotic DNA replication
    • Baltus AE, Menke DB, Hu YC, Goodheart ML, Carpenter AE, de Rooij DG, et al. In germ cells of mouse embryonic ovaries, the decision to enter meiosis precedes premeiotic DNA replication. Nat Genet. 2006;38:1430-4.
    • (2006) Nat Genet , vol.38 , pp. 1430-1434
    • Baltus, A.E.1    Menke, D.B.2    Hu, Y.C.3    Goodheart, M.L.4    Carpenter, A.E.5    Rooij, D.G.6
  • 57
    • 33747374074 scopus 로고    scopus 로고
    • The novel SPARC family member SMOC-2 potentiates angiogenic growth factor activity
    • Rocnik EF, Liu P, Sato K, Walsh K, Vaziri C. The novel SPARC family member SMOC-2 potentiates angiogenic growth factor activity. J Biol Chem. 2006;281:22855-64.
    • (2006) J Biol Chem , vol.281 , pp. 22855-22864
    • Rocnik, E.F.1    Liu, P.2    Sato, K.3    Walsh, K.4    Vaziri, C.5
  • 58
    • 84867342942 scopus 로고    scopus 로고
    • Identifying the stem cell of the intestinal crypt: strategies and pitfalls
    • Barker N, van Oudenaarden A, Clevers H. Identifying the stem cell of the intestinal crypt: strategies and pitfalls. Cell Stem Cell. 2012;11:452-60.
    • (2012) Cell Stem Cell , vol.11 , pp. 452-460
    • Barker, N.1    Oudenaarden, A.2    Clevers, H.3
  • 59
    • 58149239731 scopus 로고    scopus 로고
    • Ski and SnoN, potent negative regulators of TGF-beta signaling
    • Deheuninck J, Luo K. Ski and SnoN, potent negative regulators of TGF-beta signaling. Cell Res. 2009;19:47-57.
    • (2009) Cell Res , vol.19 , pp. 47-57
    • Deheuninck, J.1    Luo, K.2
  • 60
    • 84902202454 scopus 로고    scopus 로고
    • DNMT3L promotes quiescence in postnatal spermatogonial progenitor cells
    • Liao HF, Chen WS, Chen YH, Kao TH, Tseng YT, Lee CY, et al. DNMT3L promotes quiescence in postnatal spermatogonial progenitor cells. Development. 2014;141:2402-13.
    • (2014) Development , vol.141 , pp. 2402-2413
    • Liao, H.F.1    Chen, W.S.2    Chen, Y.H.3    Kao, T.H.4    Tseng, Y.T.5    Lee, C.Y.6
  • 61
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell. 2010;38:576-89.
    • (2010) Mol Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6
  • 62
    • 20444435138 scopus 로고    scopus 로고
    • Sox3 expression in undifferentiated spermatogonia is required for the progression of spermatogenesis
    • Raverot G, Weiss J, Park SY, Hurley L, Jameson JL. Sox3 expression in undifferentiated spermatogonia is required for the progression of spermatogenesis. Dev Biol. 2005;283:215-25.
    • (2005) Dev Biol , vol.283 , pp. 215-225
    • Raverot, G.1    Weiss, J.2    Park, S.Y.3    Hurley, L.4    Jameson, J.L.5
  • 63
    • 84884418032 scopus 로고    scopus 로고
    • The role of SOX10 during enteric nervous system development
    • Bondurand N, Sham MH. The role of SOX10 during enteric nervous system development. Dev Biol. 2013;382:330-43.
    • (2013) Dev Biol , vol.382 , pp. 330-343
    • Bondurand, N.1    Sham, M.H.2
  • 64
    • 84880797680 scopus 로고    scopus 로고
    • A dual role for SOX10 in the maintenance of the postnatal melanocyte lineage and the differentiation of melanocyte stem cell progenitors
    • Harris ML, Buac K, Shakhova O, Hakami RM, Wegner M, Sommer L, et al. A dual role for SOX10 in the maintenance of the postnatal melanocyte lineage and the differentiation of melanocyte stem cell progenitors. PLoS Genet. 2013;9:e1003644.
    • (2013) PLoS Genet , vol.9
    • Harris, M.L.1    Buac, K.2    Shakhova, O.3    Hakami, R.M.4    Wegner, M.5    Sommer, L.6
  • 65
    • 84857331867 scopus 로고    scopus 로고
    • Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome
    • Xie W, Barr CL, Kim A, Yue F, Lee AY, Eubanks J, et al. Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome. Cell. 2012;148:816-31.
    • (2012) Cell , vol.148 , pp. 816-831
    • Xie, W.1    Barr, C.L.2    Kim, A.3    Yue, F.4    Lee, A.Y.5    Eubanks, J.6
  • 66
    • 84878292277 scopus 로고    scopus 로고
    • Transcriptional and epigenetic dynamics during specification of human embryonic stem cells
    • Gifford CA, Ziller MJ, Gu H, Trapnell C, Donaghey J, Tsankov A, et al. Transcriptional and epigenetic dynamics during specification of human embryonic stem cells. Cell. 2013;153:1149-63.
    • (2013) Cell , vol.153 , pp. 1149-1163
    • Gifford, C.A.1    Ziller, M.J.2    Gu, H.3    Trapnell, C.4    Donaghey, J.5    Tsankov, A.6
  • 68
    • 84872046078 scopus 로고    scopus 로고
    • The sox family of transcription factors: versatile regulators of stem and progenitor cell fate
    • Sarkar A, Hochedlinger K. The sox family of transcription factors: versatile regulators of stem and progenitor cell fate. Cell Stem Cell. 2013;12:15-30.
    • (2013) Cell Stem Cell , vol.12 , pp. 15-30
    • Sarkar, A.1    Hochedlinger, K.2
  • 69
  • 70
    • 84856468953 scopus 로고    scopus 로고
    • NGS QC Toolkit: a toolkit for quality control of next generation sequencing data
    • Patel RK, Jain M. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS One. 2012;7:e30619.
    • (2012) PLoS One , vol.7
    • Patel, R.K.1    Jain, M.2
  • 71
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
    • Krueger F, Andrews SR. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics. 2011;27:1571-2.
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 74
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009;25:1105-11.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 75
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
    • Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 2012;7:562-78.
    • (2012) Nat Protoc , vol.7 , pp. 562-578
    • Trapnell, C.1    Roberts, A.2    Goff, L.3    Pertea, G.4    Kim, D.5    Kelley, D.R.6
  • 77
    • 77952576224 scopus 로고    scopus 로고
    • Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation
    • Peric-Hupkes D, Meuleman W, Pagie L, Bruggeman SW, Solovei I, Brugman W, et al. Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation. Mol Cell. 2010;38:603-13.
    • (2010) Mol Cell , vol.38 , pp. 603-613
    • Peric-Hupkes, D.1    Meuleman, W.2    Pagie, L.3    Bruggeman, S.W.4    Solovei, I.5    Brugman, W.6


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