-
2
-
-
0028942011
-
The population genetics of speciation: The evolution of hybrid incompatibilities
-
Orr, H. A. The population genetics of speciation: the evolution of hybrid incompatibilities. Genetics 139, 1805-1813 (1995).
-
(1995)
Genetics
, vol.139
, pp. 1805-1813
-
-
Orr, H.A.1
-
3
-
-
77249093924
-
The molecular evolutionary basis of species formation
-
Presgraves, D. C. The molecular evolutionary basis of species formation. Nat. Rev. Genet. 11, 175-180 (2010).
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 175-180
-
-
Presgraves, D.C.1
-
5
-
-
77956013849
-
Speciation genes in plants
-
Rieseberg, L. H. & Blackman, B. K. Speciation genes in plants. Ann. Bot. 106, 439-455 (2010).
-
(2010)
Ann. Bot.
, vol.106
, pp. 439-455
-
-
Rieseberg, L.H.1
Blackman, B.K.2
-
6
-
-
34247231965
-
Hybrid necrosis: Autoimmunity as a potential geneflow barrier in plant species
-
Bomblies, K. & Weigel, D. Hybrid necrosis: autoimmunity as a potential geneflow barrier in plant species. Nat. Rev. Genet. 8, 382-393 (2007).
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 382-393
-
-
Bomblies, K.1
Weigel, D.2
-
7
-
-
78649481127
-
Natural variation at strubbelig receptor kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions
-
Alcazar, R. et al. Natural variation at strubbelig receptor kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions. Nat. Genet. 42, 1135-1139 (2010).
-
(2010)
Nat. Genet.
, vol.42
, pp. 1135-1139
-
-
Alcazar, R.1
-
8
-
-
58549087805
-
Incremental steps toward incompatibility revealed by Arabidopsis epistatic interactions modulating salicylic acid pathway activation
-
Alcazar, R., Garcia, A. V., Parker, J. E. & Reymond, M. Incremental steps toward incompatibility revealed by Arabidopsis epistatic interactions modulating salicylic acid pathway activation. Proc. Natl Acad. Sci. USA 106, 334-339 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 334-339
-
-
Alcazar, R.1
Garcia, A.V.2
Parker, J.E.3
Reymond, M.4
-
9
-
-
84919653472
-
A two-locus interaction causes interspecific hybrid weakness in rice
-
Chen, C. et al. A two-locus interaction causes interspecific hybrid weakness in rice. Nat. Commun. 5, 3357 (2014).
-
(2014)
Nat. Commun.
, vol.5
, pp. 3357
-
-
Chen, C.1
-
10
-
-
72049104777
-
Rin4 causes hybrid necrosis and race-specific resistance in an interspecific lettuce hybrid
-
Jeuken, M. J. et al. Rin4 causes hybrid necrosis and race-specific resistance in an interspecific lettuce hybrid. Plant Cell 21, 3368-3378 (2009).
-
(2009)
Plant Cell
, vol.21
, pp. 3368-3378
-
-
Jeuken, M.J.1
-
11
-
-
0037177596
-
A tomato cysteine protease required for Cf-2-dependent disease resistance and suppression of autonecrosis
-
Kruger, J. et al. A tomato cysteine protease required for Cf-2-dependent disease resistance and suppression of autonecrosis. Science 296, 744-747 (2002).
-
(2002)
Science
, vol.296
, pp. 744-747
-
-
Kruger, J.1
-
12
-
-
77949889853
-
Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice
-
Yamamoto, E. et al. Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice. Mol. Genet. Genomics 283, 305-315 (2010).
-
(2010)
Mol. Genet. Genomics
, vol.283
, pp. 305-315
-
-
Yamamoto, E.1
-
13
-
-
34548676152
-
Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants
-
Bomblies, K. et al. Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants. PLoS Biol. 5, e236 (2007).
-
(2007)
PLoS Biol.
, vol.5
, pp. e236
-
-
Bomblies, K.1
-
14
-
-
84920268654
-
Species-wide genetic incompatibility analysis identifies immune genes as hot spots of deleterious epistasis
-
Chae, E. et al. Species-wide genetic incompatibility analysis identifies immune genes as hot spots of deleterious epistasis. Cell 159, 1341-1351 (2014).
-
(2014)
Cell
, vol.159
, pp. 1341-1351
-
-
Chae, E.1
-
15
-
-
33747496376
-
A genome-wide survey of R gene polymorphisms in Arabidopsis
-
Bakker, E. G., Toomajian, C., Kreitman, M. & Bergelson, J. A genome-wide survey of R gene polymorphisms in Arabidopsis. Plant Cell 18, 1803-1818 (2006).
-
(2006)
Plant Cell
, vol.18
, pp. 1803-1818
-
-
Bakker, E.G.1
Toomajian, C.2
Kreitman, M.3
Bergelson, J.4
-
16
-
-
84886020336
-
Evolution and conservation of plant NLR functions
-
Jacob, F., Vernaldi, S. & Maekawa, T. Evolution and conservation of plant NLR functions. Front. Immunol. 4, 297 (2013).
-
(2013)
Front. Immunol.
, vol.4
, pp. 297
-
-
Jacob, F.1
Vernaldi, S.2
Maekawa, T.3
-
17
-
-
84879032810
-
Evolutionary consequences of self-fertilization in plants
-
Wright, S. I., Kalisz, S. & Slotte, T. Evolutionary consequences of self-fertilization in plants. Proc. Biol. Sci. 280, 20130133.
-
Proc. Biol. Sci.
, vol.280
, pp. 20130133
-
-
Wright, S.I.1
Kalisz, S.2
Slotte, T.3
-
18
-
-
1642277988
-
The genetics of floral divergence and postzygotic barriers between outcrossing and selfing populations of Arenaria uniflora (Caryophyllaceae)
-
Fishman, L. & Stratton, D. A. The genetics of floral divergence and postzygotic barriers between outcrossing and selfing populations of Arenaria uniflora (Caryophyllaceae). Evolution 58, 296-307 (2004).
-
(2004)
Evolution
, vol.58
, pp. 296-307
-
-
Fishman, L.1
Stratton, D.A.2
-
19
-
-
32244447103
-
High biological species diversity in the arctic flora
-
Grundt, H. H., Kjolner, S., Borgen, L., Rieseberg, L. H. & Brochmann, C. High biological species diversity in the arctic flora. Proc. Natl Acad. Sci. USA 103, 972-975 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 972-975
-
-
Grundt, H.H.1
Kjolner, S.2
Borgen, L.3
Rieseberg, L.H.4
Brochmann, C.5
-
20
-
-
84870546247
-
Tempo and mode in plant breeding system evolution
-
Goldberg, E. E. & Igic, B. Tempo and mode in plant breeding system evolution. Evolution 66, 3701-3709 (2012).
-
(2012)
Evolution
, vol.66
, pp. 3701-3709
-
-
Goldberg, E.E.1
Igic, B.2
-
21
-
-
65249150257
-
Recent speciation associated with the evolution of selfing in Capsella
-
Foxe, J. P. et al. Recent speciation associated with the evolution of selfing in Capsella. Proc. Natl Acad. Sci. USA 106, 5241-5245 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 5241-5245
-
-
Foxe, J.P.1
-
22
-
-
65249092034
-
Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck
-
Guo, Y. L. et al. Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck. Proc. Natl Acad. Sci. USA 106, 5246-5251 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 5246-5251
-
-
Guo, Y.L.1
-
23
-
-
84879686532
-
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
-
Slotte, T. et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nat. Genet. 45, 831-835 (2013).
-
(2013)
Nat. Genet.
, vol.45
, pp. 831-835
-
-
Slotte, T.1
-
24
-
-
84924083242
-
Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris
-
Douglas, G. M. et al. Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris. Proc. Natl Acad. Sci. USA 112, 2806-2811 (2015).
-
(2015)
Proc. Natl Acad. Sci. USA
, vol.112
, pp. 2806-2811
-
-
Douglas, G.M.1
-
25
-
-
84857625124
-
Missing link species Capsella orientalis and Capsella thracica elucidate evolution of model plant genus Capsella (Brassicaceae)
-
Hurka, H., Friesen, N., German, D. A., Franzke, A. & Neuffer, B. 'Missing link' species Capsella orientalis and Capsella thracica elucidate evolution of model plant genus Capsella (Brassicaceae). Mol. Ecol. 21, 1223-1238 (2012).
-
(2012)
Mol. Ecol.
, vol.21
, pp. 1223-1238
-
-
Hurka, H.1
Friesen, N.2
German, D.A.3
Franzke, A.4
Neuffer, B.5
-
26
-
-
84906306671
-
Repeated evolutionary changes of leaf morphology caused by mutations to a homeobox gene
-
Sicard, A. et al. Repeated evolutionary changes of leaf morphology caused by mutations to a homeobox gene. Curr. Biol. 24, 1880-1886 (2014).
-
(2014)
Curr. Biol.
, vol.24
, pp. 1880-1886
-
-
Sicard, A.1
-
27
-
-
80054999791
-
Genetics, evolution, and adaptive significance of the selfing syndrome in the genus Capsella
-
Sicard, A. et al. Genetics, evolution, and adaptive significance of the selfing syndrome in the genus Capsella. Plant Cell 23, 3156-3171 (2011).
-
(2011)
Plant Cell
, vol.23
, pp. 3156-3171
-
-
Sicard, A.1
-
28
-
-
0036007925
-
EDS5, an essential component of salicylic acid-dependent signaling for disease resistance in Arabidopsis, is a member of the MATE transporter family
-
Nawrath, C., Heck, S., Parinthawong, N. & Metraux, J. P. EDS5, an essential component of salicylic acid-dependent signaling for disease resistance in Arabidopsis, is a member of the MATE transporter family. Plant Cell 14, 275-286 (2002).
-
(2002)
Plant Cell
, vol.14
, pp. 275-286
-
-
Nawrath, C.1
Heck, S.2
Parinthawong, N.3
Metraux, J.P.4
-
29
-
-
0035477801
-
Direct interaction between the Arabidopsis disease resistance signaling proteins, EDS1 and PAD4
-
Feys, B. J., Moisan, L. J., Newman, M. A. & Parker, J. E. Direct interaction between the Arabidopsis disease resistance signaling proteins, EDS1 and PAD4. EMBO J. 20, 5400-5411 (2001).
-
(2001)
EMBO J.
, vol.20
, pp. 5400-5411
-
-
Feys, B.J.1
Moisan, L.J.2
Newman, M.A.3
Parker, J.E.4
-
30
-
-
84877669207
-
Systemic acquired resistance: Turning local infection into global defense
-
Fu, Z. Q. & Dong, X. Systemic acquired resistance: turning local infection into global defense. Annu. Rev. Plant Biol. 64, 839-863 (2013).
-
(2013)
Annu. Rev. Plant Biol.
, vol.64
, pp. 839-863
-
-
Fu, Z.Q.1
Dong, X.2
-
31
-
-
0030331042
-
Pathogen-induced systemic activation of a plant defensin gene in Arabidopsis follows a salicylic acid-independent pathway
-
Penninckx, I. A. et al. Pathogen-induced systemic activation of a plant defensin gene in Arabidopsis follows a salicylic acid-independent pathway. Plant Cell 8, 2309-2323 (1996).
-
(1996)
Plant Cell
, vol.8
, pp. 2309-2323
-
-
Penninckx, I.A.1
-
32
-
-
0030938488
-
The Arabidopsis NPR1 gene that controls systemic acquired resistance encodes a novel protein containing ankyrin repeats
-
Cao, H., Glazebrook, J., Clarke, J. D., Volko, S. & Dong, X. The Arabidopsis NPR1 gene that controls systemic acquired resistance encodes a novel protein containing ankyrin repeats. Cell 88, 57-63 (1997).
-
(1997)
Cell
, vol.88
, pp. 57-63
-
-
Cao, H.1
Glazebrook, J.2
Clarke, J.D.3
Volko, S.4
Dong, X.5
-
33
-
-
15644377399
-
The Arabidopsis downy mildew resistance gene RPP5 shares similarity to the toll and interleukin-1 receptors with N and L6
-
Parker, J. E. et al. The Arabidopsis downy mildew resistance gene RPP5 shares similarity to the toll and interleukin-1 receptors with N and L6. Plant Cell 9, 879-894 (1997).
-
(1997)
Plant Cell
, vol.9
, pp. 879-894
-
-
Parker, J.E.1
-
34
-
-
0037080492
-
Epigenetic variation in Arabidopsis disease resistance
-
Stokes, T. L., Kunkel, B. N. & Richards, E. J. Epigenetic variation in Arabidopsis disease resistance. Genes Dev. 16, 171-182 (2002).
-
(2002)
Genes Dev.
, vol.16
, pp. 171-182
-
-
Stokes, T.L.1
Kunkel, B.N.2
Richards, E.J.3
-
35
-
-
0344945644
-
A gain-of-function mutation in a plant disease resistance gene leads to constitutive activation of downstream signal transduction pathways in suppressor of npr1-1, constitutive 1
-
Zhang, Y. L., Goritschnig, S., Dong, X. N. & Li, X. A gain-of-function mutation in a plant disease resistance gene leads to constitutive activation of downstream signal transduction pathways in suppressor of npr1-1, constitutive 1. Plant Cell 15, 2636-2646 (2003).
-
(2003)
Plant Cell
, vol.15
, pp. 2636-2646
-
-
Zhang, Y.L.1
Goritschnig, S.2
Dong, X.N.3
Li, X.4
-
36
-
-
84862830177
-
MIGS: MiRNA-induced gene silencing
-
Felippes, F. F., Wang, J. W. & Weigel, D. MIGS: miRNA-induced gene silencing. Plant J. 70, 541-547 (2012).
-
(2012)
Plant J.
, vol.70
, pp. 541-547
-
-
Felippes, F.F.1
Wang, J.W.2
Weigel, D.3
-
37
-
-
0041411550
-
Phylogenetic position and generic limits of Arabidopsis (Brassicaceae) based on sequences of nuclear ribosomal DNA
-
O'Kane, S. L. & Al-Shehbaz, I. Phylogenetic position and generic limits of Arabidopsis (Brassicaceae) based on sequences of nuclear ribosomal DNA. Ann Missouri Bot. Gard. 90, 603-612 (2003).
-
(2003)
Ann Missouri Bot. Gard.
, vol.90
, pp. 603-612
-
-
O'Kane, S.L.1
Al-Shehbaz, I.2
-
38
-
-
84939172773
-
Association mapping reveals the role of mutation-selection balance in the maintenance of genomic variation for gene expression
-
Josephs, E., Lee, Y. W., Stinchcombe, J. R. & Wright, S. I. Association mapping reveals the role of mutation-selection balance in the maintenance of genomic variation for gene expression. bioRxiv, 015743. doi: http://dx.doi.org/10.1101/015743 (2015).
-
(2015)
BioRxiv
, pp. 015743
-
-
Josephs, E.1
Lee, Y.W.2
Stinchcombe, J.R.3
Wright, S.I.4
-
39
-
-
12144291195
-
MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
-
Thimm, O. et al. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 37, 914-939 (2004).
-
(2004)
Plant J.
, vol.37
, pp. 914-939
-
-
Thimm, O.1
-
40
-
-
72749126567
-
Probing differentially expressed genes against a microarray database for in silico suppressor/enhancer and inhibitor/activator screens
-
Reina-Pinto, J. J., Voisin, D., Teodor, R. & Yephremov, A. Probing differentially expressed genes against a microarray database for in silico suppressor/enhancer and inhibitor/activator screens. Plant J. 61, 166-175 (2010).
-
(2010)
Plant J.
, vol.61
, pp. 166-175
-
-
Reina-Pinto, J.J.1
Voisin, D.2
Teodor, R.3
Yephremov, A.4
-
41
-
-
0029050966
-
Arabidopsis signal transduction mutant defective in chemically and biologically induced disease resistance
-
Delaney, T. P., Friedrich, L. & Ryals, J. A. Arabidopsis signal transduction mutant defective in chemically and biologically induced disease resistance. Proc. Natl Acad. Sci. USA 92, 6602-6606 (1995).
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 6602-6606
-
-
Delaney, T.P.1
Friedrich, L.2
Ryals, J.A.3
-
42
-
-
0035989426
-
Role of salicylic acid and NIM1/NPR1 in race-specific resistance in arabidopsis
-
Rairdan, G. J. & Delaney, T. P. Role of salicylic acid and NIM1/NPR1 in race-specific resistance in arabidopsis. Genetics 161, 803-811 (2002).
-
(2002)
Genetics
, vol.161
, pp. 803-811
-
-
Rairdan, G.J.1
Delaney, T.P.2
-
43
-
-
84893420263
-
Genomic variability as a driver of plant-pathogen coevolution?
-
Karasov, T. L., Horton, M. W. & Bergelson, J. Genomic variability as a driver of plant-pathogen coevolution? Curr. Opin. Plant Biol. 18, 24-30 (2014).
-
(2014)
Curr. Opin. Plant Biol.
, vol.18
, pp. 24-30
-
-
Karasov, T.L.1
Horton, M.W.2
Bergelson, J.3
-
44
-
-
84900307398
-
Allele distributions at hybrid incompatibility loci facilitate the potential for gene flow between cultivated and weedy rice in the US
-
Craig, S. M., Reagon, M., Resnick, L. E. & Caicedo, A. L. Allele distributions at hybrid incompatibility loci facilitate the potential for gene flow between cultivated and weedy rice in the US. PLoS ONE 9, e86647 (2014).
-
(2014)
PLoS ONE
, vol.9
-
-
Craig, S.M.1
Reagon, M.2
Resnick, L.E.3
Caicedo, A.L.4
-
45
-
-
57749112122
-
Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes
-
Long, Y. et al. Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes. Proc. Natl Acad. Sci. USA 105, 18871-18876 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 18871-18876
-
-
Long, Y.1
-
46
-
-
33646484211
-
Balancing selection and its effects on sequences in nearby genome regions
-
Charlesworth, D. Balancing selection and its effects on sequences in nearby genome regions. PLoS Genet. 2, e64 (2006).
-
(2006)
PLoS Genet.
, vol.2
, pp. e64
-
-
Charlesworth, D.1
-
47
-
-
84904275522
-
Mating system shifts and transposable element evolution in the plant genus Capsella
-
Agren, J. A. et al. Mating system shifts and transposable element evolution in the plant genus Capsella. BMC Genomics 15, 602 (2014).
-
(2014)
BMC Genomics
, vol.15
, pp. 602
-
-
Agren, J.A.1
-
48
-
-
0027014897
-
New plant binary vectors with selectable markers located proximal to the left T-DNA border
-
Becker, D., Kemper, E., Schell, J. & Masterson, R. New plant binary vectors with selectable markers located proximal to the left T-DNA border. Plant Mol. Biol. 20, 1195-1197 (1992).
-
(1992)
Plant Mol. Biol.
, vol.20
, pp. 1195-1197
-
-
Becker, D.1
Kemper, E.2
Schell, J.3
Masterson, R.4
-
49
-
-
0032447801
-
Floral dip: A simplified method for Agrobacteriummediated transformation of Arabidopsis thaliana
-
Clough, S. J. & Bent, A. F. Floral dip: a simplified method for Agrobacteriummediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743 (1998).
-
(1998)
Plant J.
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
50
-
-
33750574346
-
Large-scale histological analysis of leaf mutants using two simple leaf observation methods: Identification of novel genetic pathways governing the size and shape of leaves
-
Horiguchi, G., Fujikura, U., Ferjani, A., Ishikawa, N. & Tsukaya, H. Large-scale histological analysis of leaf mutants using two simple leaf observation methods: identification of novel genetic pathways governing the size and shape of leaves. Plant J. 48, 638-644 (2006).
-
(2006)
Plant J.
, vol.48
, pp. 638-644
-
-
Horiguchi, G.1
Fujikura, U.2
Ferjani, A.3
Ishikawa, N.4
Tsukaya, H.5
-
51
-
-
0025429011
-
Arabidopsis is susceptible to infection by a downy mildew fungus
-
Koch, E. & Slusarenko, A. Arabidopsis is susceptible to infection by a downy mildew fungus. Plant Cell 2, 437-445 (1990).
-
(1990)
Plant Cell
, vol.2
, pp. 437-445
-
-
Koch, E.1
Slusarenko, A.2
-
52
-
-
78449299668
-
R/qtl: High-throughput multiple QTL mapping
-
Arends, D., Prins, P., Jansen, R. C. & Broman, K. W. R/qtl: high-throughput multiple QTL mapping. Bioinformatics 26, 2990-2992 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2990-2992
-
-
Arends, D.1
Prins, P.2
Jansen, R.C.3
Broman, K.W.4
-
53
-
-
0037958742
-
R/qtl: QTL mapping in experimental crosses
-
Broman, K. W., Wu, H., Sen, S. & Churchill, G. A. R/qtl: QTL mapping in experimental crosses. Bioinformatics 19, 889-890 (2003).
-
(2003)
Bioinformatics
, vol.19
, pp. 889-890
-
-
Broman, K.W.1
Wu, H.2
Sen, S.3
Churchill, G.A.4
-
54
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K. et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739 (2011).
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
-
55
-
-
84862792837
-
Coalescent-based analysis distinguishes between allo-and autopolyploid origin in Shepherd's Purse (Capsella bursa-pastoris)
-
St Onge, K. R. et al. Coalescent-based analysis distinguishes between allo-and autopolyploid origin in Shepherd's Purse (Capsella bursa-pastoris). Mol. Biol. Evol. 29, 1721-1733 (2012).
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1721-1733
-
-
St Onge, K.R.1
-
56
-
-
84907587760
-
Evidence for widespread positive and negative selection in coding and conserved noncoding regions of Capsella grandiflora
-
Williamson, R. J. et al. Evidence for widespread positive and negative selection in coding and conserved noncoding regions of Capsella grandiflora. PLoS Genet. 10, e1004622 (2014).
-
(2014)
PLoS Genet.
, vol.10
-
-
Williamson, R.J.1
-
57
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima, F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595 (1989).
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
58
-
-
27544437635
-
Genomic scans for selective sweeps using SNP data
-
Nielsen, R. et al. Genomic scans for selective sweeps using SNP data. Genome Res. 15, 1566-1575 (2005).
-
(2005)
Genome Res.
, vol.15
, pp. 1566-1575
-
-
Nielsen, R.1
-
59
-
-
13444269543
-
Haploview: Analysis and visualization of LD and haplotype maps
-
Barrett, J. C., Fry, B., Maller, J. & Daly, M. J. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21, 263-265 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 263-265
-
-
Barrett, J.C.1
Fry, B.2
Maller, J.3
Daly, M.J.4
-
60
-
-
0034524858
-
Arabidopsis species hybrids in the study of species differences and evolution of amphiploidy in plants
-
Nasrallah, M. E., Yogeeswaran, K., Snyder, S. & Nasrallah, J. B. Arabidopsis species hybrids in the study of species differences and evolution of amphiploidy in plants. Plant Physiol. 124, 1605-1614 (2000).
-
(2000)
Plant Physiol.
, vol.124
, pp. 1605-1614
-
-
Nasrallah, M.E.1
Yogeeswaran, K.2
Snyder, S.3
Nasrallah, J.B.4
-
61
-
-
79956307251
-
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter, G. & Goodson, M. Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res. 21, 936-939 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
62
-
-
84928987900
-
HTSeq - A Python framework to work with high-throughput sequencing data
-
Anders, S., Pyl, P. T. & Huber, W. HTSeq-A Python framework to work with high-throughput sequencing data. Bioinformatics 31, 166-169 (2014).
-
(2014)
Bioinformatics
, vol.31
, pp. 166-169
-
-
Anders, S.1
Pyl, P.T.2
Huber, W.3
-
64
-
-
84856585935
-
Phytozome: A comparative platform for green plant genomics
-
Goodstein, D. M. et al. Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40, D1178-D1186 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D1178-D1186
-
-
Goodstein, D.M.1
|