Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice

Molecular Genetics and Genomics

Volumn 283, Issue 4, 2010, Pages 305-315

  Yamamoto, Eiji ^a   Takashi, Tomonori ^b   Morinaka, Yoichi ^b   Lin, Shaoyang ^b   Wu, Jianzhong ^c   Matsumoto, Takashi ^c   Kitano, Hidemi ^a   Matsuoka, Makoto ^a   Ashikari, Motoyuki ^a  

^a NAGOYA UNIVERSITY   (Japan)

^b Honda Research Institute Japan   (Japan)

^c NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

Autoimmune response; BDM incompatibility; Reproductive isolation; Rice; Weakness phenotype

Indexed keywords

ARTICLE; AUTOIMMUNITY; CASEIN KINASE I GENE; CONTROLLED STUDY; GENE DELETION; GENE EXPRESSION PROFILING; GENE INTERACTION; GENE MAPPING; HYBRID BREAKDOWN 2 GENE; HYBRID BREAKDOWN 3 GENE; MARKER GENE; NBS LRR GENE; NONHUMAN; PHENOTYPE; PLANT GENE; PRIORITY JOURNAL; REPRODUCTIVE ISOLATION; RICE; UPREGULATION; VARIETAS; GENE EXPRESSION REGULATION; GENETIC MARKER; GENETICS; GROWTH, DEVELOPMENT AND AGING; IMMUNOLOGY; MULTIGENE FAMILY; MUTATION; ZYGOTE;

JAPONICA;

VEGETABLE PROTEIN;

AUTOIMMUNITY; GENE DELETION; GENE EXPRESSION REGULATION, PLANT; GENETIC MARKERS; MULTIGENE FAMILY; MUTATION; ORYZA SATIVA; PLANT PROTEINS; ZYGOTE;

EID: 77949889853     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-010-0514-y     Document Type: Article

References (49)

1. Agrawal GK, Jwa NS, Rakwal R (2000a) A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors. Biochem Biophys Res Commun 274(1):157-165
2. Agrawal GK, Rakwal R, Jwa NS (2000b) Rice (Oryza sativa L.) OsPR1b gene is phytohormonally regulated in close interaction with light signals. Biochem Biophys Res Commun 278(2):290-298
3. Agrawal GK, Jwa NS, Han KS, Agrawal VP, Rakwal R (2003) Isolation of a novel rice PR4 type gene whose mRNA expression is modulated by blast pathogen attack and signaling components. Plant Physiol Biochem 41(1):81-90
4. Alcázar R, García AV, Parker JE, Reymond M (2009) Incremental steps toward incompatibility revealed by Arabidopsis epistatic interactions modulating salicylic acid pathway activation. Proc Natl Acad Sci USA 106(1):334-339
5. Amemiya A, Akamine H (1963) Biochemical genetic studies on the root growth inhibiting complementary lethal genes on rice plant. Bull Nat Inst Agric Sci Ser D 10:139-226
6. Axtell MJ, Staskawicz BJ (2003) Initiation of RPS2-specified disease resistance in Arabidopsis is coupled to the AvrRpt2-directed elimination of RIN4. Cell 112(3):369-377
7. Belkhadir Y, Nimchuk Z, Hubert DA, Mackey D, Dangl JL (2004) Arabidopsis RIN4 negatively regulates disease resistance mediated by RPS2 and RPM1 downstream or independent of the NDR1 signal modulator and is not required for the virulence functions of bacterial type III effectors AvrRpt2 or AvrRpm1. Plant Cell 16(10):2822-2835
8. Bergelson J, Kreitman M, Stahl EA, Tian D (2001) Evolutionary dynamics of plant R-genes. Science 292(5525):2281-2285
9. Bikard D, Patel D, Le Metté C, Giorgi V, Camilleri C, Bennett MJ, Loudet O (2009) Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana. Science 323(5914):623-626
10. Bomblies K, Weigel D (2007) Hybrid necrosis: autoimmunity as a potential gene-flow barrier in plant species. Nat Rev Genet 8(5):382-393
11. Bomblies K, Lempe J, Epple P, Warthmann N, Lanz C, Dangl JL, Weigel D (2007) Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants. PLoS Biol 5(9):e236
12. Chen J, Ding J, Ouyang Y, Du H, Yang J, Cheng K, Zhao J, Qiu S, Zhang X, Yao J, Liu K, Wang L, Xu C, Li X, Xue Y, Xia M, Ji Q, Lu J, Xu M, Zhang Q (2008) A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice. Proc Natl Acad Sci USA 105(32):11436-11441
13. Chisholm ST, Coaker G, Day B, Staskawicz BJ (2006) Host-microbe interactions: shaping the evolution of the plant immune response. Cell 124(4):803-814
14. Coaker G, Falick A, Staskawicz B (2005) Activation of a phytopathogenic bacterial effector protein by a eukaryotic cyclophilin. Science 308(5721):548-550
15. Coyne JA, Orr HA (2004) Speciation. Sinauer Associates, Sunderland
16. DeYoung BJ, Innes RW (2006) Plant NBS-LRR proteins in pathogen sensing and host defense. Nat Immunol 7(12):1243-1249
17. Dobzhansky T (1937) Genetics and the origin of species. Columbia University Press, New York
18. Dodds PN, Lawrence GJ, Catanzariti AM, Teh T, Wang CI, Ayliffe MA, Kobe B, Ellis JG (2003) Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes. Proc Natl Acad Sci USA 103(23):8888-8893
19. Fukuoka S, Namai H, Okuno K (1998) RFLP mapping of the genes controlling hybrid breakdown in rice. Theor Appl Genet 97:446-449
20. Fukuoka S, Newingham MCV, Ishtaq M, Nagamine T, Kawase M, Okuno K (2005) Identification and mapping of two new loci for hybrid breakdown in cultivated rice. Rice Genet Newsl 22:29
21. Gross SD, Anderson RA (1998) Casein kinase I: spatial organization and positioning of a multifunctional protein kinase family. Cell Signal 10(10):699-711
22. Jia Y, McAdams SA, Bryan GT, Hershey HP, Valent B (2000) Direct interaction of resistance gene and avirulence gene products confers rice blast resistance. EMBO J 19(15):4004-4014
23. Jones JD, Dangl JL (2006) The plant immune system. Nature 444(7117):323-329
24. Knippschild U, Gocht A, Wolff S, Huber N, Löhler J, Stöter M (2005) The casein kinase 1 family: participation in multiple cellular processes in eukaryotes. Cell Signal 17(6):675-689
25. Kojima Y, Ebana K, Fukuoka S, Nagamine T, Kawase M (2005) Development of an RFLP-based rice diversity research set of germplasm. Breed Sci 55(4):431-440
26. Kubo T, Yoshimura A (2002) Genetic basis of hybrid breakdown in a japonica/indica cross of rice, Oryza sativa L. Theor Appl Genet 105:906-911
27. Liu W, Xu ZH, Luo D, Xue HW (2003) Role of CKI1, a rice casein kinase I, in root development and plant hormone sensitivity. Plant J 36:189-202
28. Lomsadze A, Ter-Hovhannisyan V, Chernoff Y, Borodovsky M (2005) Gene identification in novel eukaryotic genomes by selftraining algorithm. Nucleic Acids Res 33(20):6494-6506
29. Long Y, Zhao L, Niu B, Su J, Wu H, Chen Y, Zhang Q, Guo J, Zhuang C, Mei M, Xia J, Wang L, Wu H, Liu YG (2008) Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes. Proc Natl Acad Sci USA 105(48):18871-18876
30. Mackey D, Holt BF 3rd, Wiig A, Dangl JL (2002) RIN4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108(6):743-754
31. Matsubara K, Ando T, Mizubayashi T, Ito S, Yano M (2007) Identification and linkage mapping of complementary recessive genes causing hybrid breakdown in an intraspecific rice cross. Theor Appl Genet 115(2):179-186
32. Meyers BC, Kozik A, Griego A, Kuang H, Michelmore RW (2003) Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 5(4):809-834
33. Midoh N, Iwata M (1996) Cloning and characterization of a probenazole-inducible gene for an intracellular pathogenesisrelated protein in rice. Plant Cell Physiol 37(1):9-18
34. Mitsuhara I, Iwai T, Seo S, Yanagawa Y, Kawahigasi H, Hirose S, Ohkawa Y, Ohashi Y (2008) Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180). Mol Genet Genomics 279(4):415-427
35. Miura K, Yamamoto E, Morinaka Y, Takashi T, Kitano H, Matsuoka M, Ashikari M (2008) The hybrid breakdown 1(t) locus induces interspecific hybrid breakdown between rice Oryza sativa cv. Koshihikari and its wild relative O. nivara. Breed Sci 58(2):99-105
36. Mondragon-Palomino M, Meyers BC, Michelmore RW, Gaut BS (2002) Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Res 12:1305-1315
37. Mucyn TS, Clemente A, Andriotis VM, Balmuth AL, Oldroyd GE, Staskawicz BJ, Rathjen JP (2006) The tomato NBARC-LRR protein Prf interacts with Pto kinase in vivo to regulate specific plant immunity. Plant Cell 18(10):2792-2806
38. Muller HJ (1942) Isolating mechanisms, evolution, and temperature. Biol Symp 6:71-124
39. Nishimura A, Ashikari M, Lin S, Takashi T, Angeles ER, Yamamoto T, Matsuoka M (2005) Isolation of a rice regeneration quantitative trait loci gene and its application to transformation systems. Proc Natl Acad Sci USA 102(33):11940-11944
40. Rieseberg LH, Willis JH (2007) Plant speciation. Science 317(5840):910-914
41. Rieseberg LH, Wood TE, Baack EJ (2006) The nature of plant species. Nature 440(7083):524-527
42. 2 chlorosis in rice cultivars of the indica and japonica types. Theor Appl Genet 75:723-724
43. Schaffrath U, Zabbai F, Dudler R (2000) Characterization of RCI-1, a chloroplastic rice lipoxygenase whose synthesis is induced by chemical plant resistance activators. Eur J Biochem 267(19):5935-5942
44. Shimono M, Sugano S, Nakayama A, Jiang CJ, Ono K, Toki S, Takatsuji H (2007) Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance. Plant Cell 19(6):2064-2076
45. Stebbins GL Jr (1950) Isolation and the origin of species. In: Stebbins GL Jr (ed) Variation and evolution in plants. Columbia University Press, New York, pp 189-250
46. Tian D, Traw MB, Chen JQ, Kreitman M, Bergelson J (2003) Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana. Nature 423(6935):74-77
47. van Hulten M, Pelser M, van Loon LC, Pieterse CM, Ton J (2006) Costs and benefits of priming for defense in Arabidopsis. Proc Natl Acad Sci USA 103(14):5602-5607
48. Yamamoto E, Takashi T, Morinika Y, Lin S, Kitano H, Matsuoka M, Ashikari M (2007) Interaction of two recessive genes, hbd2 and hbd3, induces hybrid breakdown in rice. Theor Appl Genet 115:187-194
49. Yang S, Feng Z, Zhang X, Jiang K, Jin X, Hang Y, Chen JQ, Tian D (2006) Genome-wide investigation on the genetic variations of rice disease resistance genes. Plant Mol Biol 62(1-2):181-193