-
1
-
-
84866860221
-
methylKit: A comprehensive R package for the analysis of genome-wide DNA methylation profiles
-
Akalin A, Kormaksson M, Li S, Garrett-Bakelman FE, Figueroa ME, Melnick A, Mason CE (2012) methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles. Genome Biol 13: R87
-
(2012)
Genome Biol
, vol.13
-
-
Akalin, A.1
Kormaksson, M.2
Li, S.3
Garrett-Bakelman, F.E.4
Figueroa, M.E.5
Melnick, A.6
Mason, C.E.7
-
2
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
3
-
-
80054718602
-
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
-
Becker C, Hagmann J, Müller J, KoenigD, Stegle O, Borgwardt K,Weigel D (2011) Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature 480: 245-249
-
(2011)
Nature
, vol.480
, pp. 245-249
-
-
Becker, C.1
Hagmann, J.2
Müller, J.3
Koenig, D.4
Stegle, O.5
Borgwardt, K.6
Weigel, D.7
-
4
-
-
0028885673
-
Epigenetic control of an endogenous gene family is revealed by a novel blue fluorescent mutant of Arabidopsis
-
Bender J, Fink GR (1995) Epigenetic control of an endogenous gene family is revealed by a novel blue fluorescent mutant of Arabidopsis. Cell 83: 725-734
-
(1995)
Cell
, vol.83
, pp. 725-734
-
-
Bender, J.1
Fink, G.R.2
-
5
-
-
79851497145
-
A fast, powerful method for detecting identity by descent
-
Browning BL, Browning SR (2011) A fast, powerful method for detecting identity by descent. Am J Hum Genet 88: 173-182
-
(2011)
Am J Hum Genet
, vol.88
, pp. 173-182
-
-
Browning, B.L.1
Browning, S.R.2
-
6
-
-
84901311476
-
A MITE transposon insertion is associated with differential methylation at the maize flowering time QTL Vgt1
-
Castelletti S, Tuberosa R, Pindo M, Salvi S (2014) A MITE transposon insertion is associated with differential methylation at the maize flowering time QTL Vgt1. G3 4: 805-812
-
(2014)
G3
, vol.4
, pp. 805-812
-
-
Castelletti, S.1
Tuberosa, R.2
Pindo, M.3
Salvi, S.4
-
7
-
-
17744364327
-
Gardening the genome: DNA methylation in Arabidopsis thaliana
-
Chan SW, Henderson IR, Jacobsen SE (2005) Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet 6: 351-360
-
(2005)
Nat Rev Genet
, vol.6
, pp. 351-360
-
-
Chan, S.W.1
Henderson, I.R.2
Jacobsen, S.E.3
-
8
-
-
84864353941
-
Transcriptome and methylome interactions in rice hybrids
-
Chodavarapu RK, Feng S, Ding B, Simon SA, Lopez D, Jia Y, Wang GL, Meyers BC, Jacobsen SE, Pellegrini M (2012) Transcriptome and methylome interactions in rice hybrids. Proc Natl Acad Sci USA 109: 12040-12045
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 12040-12045
-
-
Chodavarapu, R.K.1
Feng, S.2
Ding, B.3
Simon, S.A.4
Lopez, D.5
Jia, Y.6
Wang, G.L.7
Meyers, B.C.8
Jacobsen, S.E.9
Pellegrini, M.10
-
9
-
-
84864679478
-
Widespread dynamic DNA methylation in response to biotic stress
-
Dowen RH, Pelizzola M, Schmitz RJ, Lister R, Dowen JM, Nery JR, Dixon JE, Ecker JR (2012) Widespread dynamic DNA methylation in response to biotic stress. Proc Natl Acad Sci USA 109: E2183-E2191
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. E2183-E2191
-
-
Dowen, R.H.1
Pelizzola, M.2
Schmitz, R.J.3
Lister, R.4
Dowen, J.M.5
Nery, J.R.6
Dixon, J.E.7
Ecker, J.R.8
-
10
-
-
84866981889
-
Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants
-
Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, Caro E, Vashisht AA, Terragni J, Chin HG, Tu A, et al (2012) Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell 151: 167-180
-
(2012)
Cell
, vol.151
, pp. 167-180
-
-
Du, J.1
Zhong, X.2
Bernatavichute, Y.V.3
Stroud, H.4
Feng, S.5
Caro, E.6
Vashisht, A.A.7
Terragni, J.8
Chin, H.G.9
Tu, A.10
-
11
-
-
84857374101
-
Rapid establishment of genetic incompatibility through natural epigenetic variation
-
Durand S, Bouché N, Perez Strand E, Loudet O, Camilleri C (2012) Rapid establishment of genetic incompatibility through natural epigenetic variation. Curr Biol 22: 326-331
-
(2012)
Curr Biol
, vol.22
, pp. 326-331
-
-
Durand, S.1
Bouché, N.2
Perez Strand, E.3
Loudet, O.4
Camilleri, C.5
-
12
-
-
84884697475
-
Epigenetic and genetic influences on DNA methylation variation in maize populations
-
Eichten SR, Briskine R, Song J, Li Q, Swanson-Wagner R, Hermanson PJ, Waters AJ, Starr E, West PT, Tiffin P, et al (2013) Epigenetic and genetic influences on DNA methylation variation in maize populations. Plant Cell 25: 2783-2797
-
(2013)
Plant Cell
, vol.25
, pp. 2783-2797
-
-
Eichten, S.R.1
Briskine, R.2
Song, J.3
Li, Q.4
Swanson-Wagner, R.5
Hermanson, P.J.6
Waters, A.J.7
Starr, E.8
West, P.T.9
Tiffin, P.10
-
13
-
-
84872051484
-
Spreading of heterochromatin is limited to specific families of maize retrotransposons
-
Eichten SR, Ellis NA, Makarevitch I, Yeh CT, Gent JI, Guo L, McGinnis KM, Zhang X, Schnable PS, Vaughn MW (2012) Spreading of heterochromatin is limited to specific families of maize retrotransposons. PLoS Genet 8: e1003127
-
(2012)
PLoS Genet
, vol.8
-
-
Eichten, S.R.1
Ellis, N.A.2
Makarevitch, I.3
Yeh, C.T.4
Gent, J.I.5
Guo, L.6
McGinnis, K.M.7
Zhang, X.8
Schnable, P.S.9
Vaughn, M.W.10
-
14
-
-
81755163109
-
Heritable epigenetic variation among maize inbreds
-
Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, et al (2011) Heritable epigenetic variation among maize inbreds. PLoS Genet 7: e1002372
-
(2011)
PLoS Genet
, vol.7
-
-
Eichten, S.R.1
Swanson-Wagner, R.A.2
Schnable, J.C.3
Waters, A.J.4
Hermanson, P.J.5
Liu, S.6
Yeh, C.T.7
Jia, Y.8
Gendler, K.9
Freeling, M.10
-
15
-
-
31744444117
-
Maize association population: A high-resolution platform for quantitative trait locus dissection
-
Flint-Garcia SA, Thuillet AC, Yu J, Pressoir G, Romero SM, Mitchell SE, Doebley J, Kresovich S, Goodman MM, Buckler ES (2005) Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant J 44: 1054-1064
-
(2005)
Plant J
, vol.44
, pp. 1054-1064
-
-
Flint-Garcia, S.A.1
Thuillet, A.C.2
Yu, J.3
Pressoir, G.4
Romero, S.M.5
Mitchell, S.E.6
Doebley, J.7
Kresovich, S.8
Goodman, M.M.9
Buckler, E.S.10
-
16
-
-
67149086996
-
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
-
Gehring M, Bubb KL, Henikoff S (2009) Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 324: 1447-1451
-
(2009)
Science
, vol.324
, pp. 1447-1451
-
-
Gehring, M.1
Bubb, K.L.2
Henikoff, S.3
-
17
-
-
84875971371
-
CHH islands: De novo DNA methylation in near-gene chromatin regulation in maize
-
Gent JI, Ellis NA, Guo L, Harkess AE, Yao Y, Zhang X, Dawe RK (2013) CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize. Genome Res 23: 628-637
-
(2013)
Genome Res
, vol.23
, pp. 628-637
-
-
Gent, J.I.1
Ellis, N.A.2
Guo, L.3
Harkess, A.E.4
Yao, Y.5
Zhang, X.6
Dawe, R.K.7
-
18
-
-
33947310031
-
Environmental epigenomics and disease susceptibility
-
Jirtle RL, Skinner MK (2007) Environmental epigenomics and disease susceptibility. Nat Rev Genet 8: 253-262
-
(2007)
Nat Rev Genet
, vol.8
, pp. 253-262
-
-
Jirtle, R.L.1
Skinner, M.K.2
-
19
-
-
67651227407
-
Assessing the impact of transgenerational epigenetic variation on complex traits
-
Johannes F, Porcher E, Teixeira FK, Saliba-Colombani V, Simon M, Agier N, Bulski A, Albuisson J, Heredia F, Audigier P, et al (2009) Assessing the impact of transgenerational epigenetic variation on complex traits. PLoS Genet 5: e1000530
-
(2009)
PLoS Genet
, vol.5
-
-
Johannes, F.1
Porcher, E.2
Teixeira, F.K.3
Saliba-Colombani, V.4
Simon, M.5
Agier, N.6
Bulski, A.7
Albuisson, J.8
Heredia, F.9
Audigier, P.10
-
20
-
-
33846931283
-
The SRA methyl-cytosine-binding domain links DNA and histone methylation
-
Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE (2007) The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol 17: 379-384
-
(2007)
Curr Biol
, vol.17
, pp. 379-384
-
-
Johnson, L.M.1
Bostick, M.2
Zhang, X.3
Kraft, E.4
Henderson, I.5
Callis, J.6
Jacobsen, S.E.7
-
21
-
-
0036274359
-
The fundamental role of epigenetic events in cancer
-
Jones PA, Baylin SB (2002) The fundamental role of epigenetic events in cancer. Nat Rev Genet 3: 415-428
-
(2002)
Nat Rev Genet
, vol.3
, pp. 415-428
-
-
Jones, P.A.1
Baylin, S.B.2
-
22
-
-
79957868920
-
Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications
-
Krueger F, Andrews SR (2011) Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics 27: 1571-1572
-
(2011)
Bioinformatics
, vol.27
, pp. 1571-1572
-
-
Krueger, F.1
Andrews, S.R.2
-
23
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law JA, Jacobsen SE (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 11: 204-220
-
(2010)
Nat Rev Genet
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
24
-
-
84922208635
-
Genetic perturbation of the maize methylome
-
Li Q, Eichten SR, Hermanson PJ, Zaunbrecher VM, Song J, Wendt J, Rosenbaum H, Madzima TF, Sloan AE, Huang J, et al (2014) Genetic perturbation of the maize methylome. Plant Cell 26: 4602- 4616
-
(2014)
Plant Cell
, vol.26
, pp. 4602-4616
-
-
Li, Q.1
Eichten, S.R.2
Hermanson, P.J.3
Zaunbrecher, V.M.4
Song, J.5
Wendt, J.6
Rosenbaum, H.7
Madzima, T.F.8
Sloan, A.E.9
Huang, J.10
-
25
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078-2079
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
26
-
-
84876130617
-
An optimized algorithm for detecting and annotating regional differential methylation
-
Li S, Garrett-Bakelman FE, Akalin A, Zumbo P, Levine R, To BL, Lewis ID, Brown AL, D'Andrea RJ, Melnick A, et al (2013) An optimized algorithm for detecting and annotating regional differential methylation. BMC Bioinformatics (Suppl 5) 14: S10
-
(2013)
BMC Bioinformatics (Suppl 5)
, vol.14
-
-
Li, S.1
Garrett-Bakelman, F.E.2
Akalin, A.3
Zumbo, P.4
Levine, R.5
To, B.L.6
Lewis, I.D.7
Brown, A.L.8
D'Andrea, R.J.9
Melnick, A.10
-
27
-
-
84901041535
-
RNA-directed DNA methylation: An epigenetic pathway of increasing complexity
-
Matzke MA, Mosher RA (2014) RNA-directed DNA methylation: an epigenetic pathway of increasing complexity. Nat Rev Genet 15: 394-408
-
(2014)
Nat Rev Genet
, vol.15
, pp. 394-408
-
-
Matzke, M.A.1
Mosher, R.A.2
-
28
-
-
68449094455
-
Genetic properties of the maize nested association mapping population
-
McMullen MD, Kresovich S, Villeda HS, Bradbury P, Li H, Sun Q, Flint- Garcia S, Thornsberry J, Acharya C, Bottoms C, et al (2009) Genetic properties of the maize nested association mapping population. Science 325: 737-740
-
(2009)
Science
, vol.325
, pp. 737-740
-
-
McMullen, M.D.1
Kresovich, S.2
Villeda, H.S.3
Bradbury, P.4
Li, H.5
Sun, Q.6
Flint-Garcia, S.7
Thornsberry, J.8
Acharya, C.9
Bottoms, C.10
-
29
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
30
-
-
84884695071
-
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
-
Regulski M, Lu Z, Kendall J, Donoghue MT, Reinders J, Llaca V, Deschamps S, Smith A, Levy D, McCombie WR, et al (2013) The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Res 23: 1651- 1662
-
(2013)
Genome Res
, vol.23
, pp. 1651-1662
-
-
Regulski, M.1
Lu, Z.2
Kendall, J.3
Donoghue, M.T.4
Reinders, J.5
Llaca, V.6
Deschamps, S.7
Smith, A.8
Levy, D.9
McCombie, W.R.10
-
31
-
-
65249186659
-
Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes
-
Reinders J, Wulff BB, Mirouze M, Marí-Ordóñez A, Dapp M, Rozhon W, Bucher E, Theiler G, Paszkowski J (2009) Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes. Genes Dev 23: 939-950
-
(2009)
Genes Dev
, vol.23
, pp. 939-950
-
-
Reinders, J.1
Wulff, B.B.2
Mirouze, M.3
Marí-Ordóñez, A.4
Dapp, M.5
Rozhon, W.6
Bucher, E.7
Theiler, G.8
Paszkowski, J.9
-
32
-
-
78651271733
-
Integrative genomics viewer
-
Robinson JT, Thorvaldsdóttir H, Winckler W, Guttman M, Lander ES, Getz G, Mesirov JP (2011) Integrative genomics viewer. Nat Biotechnol 29: 24-26
-
(2011)
Nat Biotechnol
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdóttir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
Getz, G.6
Mesirov, J.P.7
-
33
-
-
84877350957
-
Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm
-
Rodrigues JA, Ruan R, Nishimura T, Sharma MK, Sharma R, Ronald PC, Fischer RL, Zilberman D (2013) Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm. Proc Natl Acad Sci USA 110: 7934- 7939
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 7934-7939
-
-
Rodrigues, J.A.1
Ruan, R.2
Nishimura, T.3
Sharma, M.K.4
Sharma, R.5
Ronald, P.C.6
Fischer, R.L.7
Zilberman, D.8
-
34
-
-
78751580443
-
Differentiation of epigenetic modifications between transposons and genes
-
Saze H, Kakutani T (2011) Differentiation of epigenetic modifications between transposons and genes. Curr Opin Plant Biol 14: 81-87
-
(2011)
Curr Opin Plant Biol
, vol.14
, pp. 81-87
-
-
Saze, H.1
Kakutani, T.2
-
35
-
-
84884688892
-
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population
-
Schmitz RJ, He Y, Valdés-López O, Khan SM, Joshi T, Urich MA, Nery JR, Diers B, Xu D, Stacey G, et al (2013a) Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. Genome Res 23: 1663-1674
-
(2013)
Genome Res
, vol.23
, pp. 1663-1674
-
-
Schmitz, R.J.1
He, Y.2
Valdés-López, O.3
Khan, S.M.4
Joshi, T.5
Urich, M.A.6
Nery, J.R.7
Diers, B.8
Xu, D.9
Stacey, G.10
-
36
-
-
80054837794
-
Transgenerational epigenetic instability is a source of novel methylation variants
-
Schmitz RJ, Schultz MD, Lewsey MG, O'Malley RC, Urich MA, Libiger O, Schork NJ, Ecker JR (2011) Transgenerational epigenetic instability is a source of novel methylation variants. Science 334: 369-373
-
(2011)
Science
, vol.334
, pp. 369-373
-
-
Schmitz, R.J.1
Schultz, M.D.2
Lewsey, M.G.3
O'Malley, R.C.4
Urich, M.A.5
Libiger, O.6
Schork, N.J.7
Ecker, J.R.8
-
37
-
-
84874991260
-
Patterns of population epigenomic diversity
-
Schmitz RJ, Schultz MD, Urich MA, Nery JR, Pelizzola M, Libiger O, Alix A, McCosh RB, Chen H, Schork NJ, et al (2013b) Patterns of population epigenomic diversity. Nature 495: 193-198
-
(2013)
Nature
, vol.495
, pp. 193-198
-
-
Schmitz, R.J.1
Schultz, M.D.2
Urich, M.A.3
Nery, J.R.4
Pelizzola, M.5
Libiger, O.6
Alix, A.7
McCosh, R.B.8
Chen, H.9
Schork, N.J.10
-
38
-
-
79952744855
-
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
-
Schnable JC, Springer NM, Freeling M (2011) Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc Natl Acad Sci USA 108: 4069-4074
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 4069-4074
-
-
Schnable, J.C.1
Springer, N.M.2
Freeling, M.3
-
39
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, et al (2009) The B73 maize genome: complexity, diversity, and dynamics. Science 326: 1112-1115
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
Pasternak, S.6
Liang, C.7
Zhang, J.8
Fulton, L.9
Graves, T.A.10
-
40
-
-
84869092574
-
'Leveling' the playing field for analyses of single-base resolution DNA methylomes
-
Schultz MD, Schmitz RJ, Ecker JR (2012) 'Leveling' the playing field for analyses of single-base resolution DNA methylomes. Trends Genet 28: 583-585
-
(2012)
Trends Genet
, vol.28
, pp. 583-585
-
-
Schultz, M.D.1
Schmitz, R.J.2
Ecker, J.R.3
-
41
-
-
84876533257
-
Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays
-
Sekhon RS, Briskine R, Hirsch CN, Myers CL, Springer NM, Buell CR, de Leon N, Kaeppler SM (2013) Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays. PLoS ONE 8: e61005
-
(2013)
PLoS ONE
, vol.8
-
-
Sekhon, R.S.1
Briskine, R.2
Hirsch, C.N.3
Myers, C.L.4
Springer, N.M.5
Buell, C.R.6
de Leon, N.7
Kaeppler, S.M.8
-
42
-
-
84912120604
-
Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization
-
Seymour DK, Koenig D, Hagmann J, Becker C, Weigel D (2014) Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization. PLoS Genet 10: e1004785
-
(2014)
PLoS Genet
, vol.10
-
-
Seymour, D.K.1
Koenig, D.2
Hagmann, J.3
Becker, C.4
Weigel, D.5
-
43
-
-
84893716683
-
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
-
Stroud H, Do T, Du J, Zhong X, Feng S, Johnson L, Patel DJ, Jacobsen SE (2014) Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nat Struct Mol Biol 21: 64-72
-
(2014)
Nat Struct Mol Biol
, vol.21
, pp. 64-72
-
-
Stroud, H.1
Do, T.2
Du, J.3
Zhong, X.4
Feng, S.5
Johnson, L.6
Patel, D.J.7
Jacobsen, S.E.8
-
44
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
45
-
-
84863393179
-
Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm
-
Waters AJ, Makarevitch I, Eichten SR, Swanson-Wagner RA, Yeh CT, Xu W, Schnable PS, VaughnMW, GehringM, Springer NM(2011) Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm. Plant Cell 23: 4221-4233
-
(2011)
Plant Cell
, vol.23
, pp. 4221-4233
-
-
Waters, A.J.1
Makarevitch, I.2
Eichten, S.R.3
Swanson-Wagner, R.A.4
Yeh, C.T.5
Xu, W.6
Schnable, P.S.7
Vaughn, M.W.8
Gehring, M.9
Springer, N.M.10
-
46
-
-
84905970505
-
Genomic distribution of H3K9me2 and DNA methylation in a maize genome
-
West PT, Li Q, Ji L, Eichten SR, Song J, Vaughn MW, Schmitz RJ, Springer NM (2014) Genomic distribution of H3K9me2 and DNA methylation in a maize genome. PLoS ONE 9: e105267
-
(2014)
PLoS ONE
, vol.9
-
-
West, P.T.1
Li, Q.2
Ji, L.3
Eichten, S.R.4
Song, J.5
Vaughn, M.W.6
Schmitz, R.J.7
Springer, N.M.8
-
47
-
-
79960484375
-
Gene silencing in X-chromosome inactivation: Advances in understanding facultative heterochromatin formation
-
Wutz A (2011) Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation. Nat Rev Genet 12: 542-553
-
(2011)
Nat Rev Genet
, vol.12
, pp. 542-553
-
-
Wutz, A.1
-
48
-
-
84873475717
-
Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense
-
Yu A, Lepère G, Jay F, Wang J, Bapaume L, Wang Y, Abraham AL, Penterman J, Fischer RL, Voinnet O, et al (2013) Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense. Proc Natl Acad Sci USA 110: 2389-2394
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 2389-2394
-
-
Yu, A.1
Lepère, G.2
Jay, F.3
Wang, J.4
Bapaume, L.5
Wang, Y.6
Abraham, A.L.7
Penterman, J.8
Fischer, R.L.9
Voinnet, O.10
-
49
-
-
84875741680
-
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
-
Zemach A, KimMY, Hsieh PH, Coleman-Derr D, Eshed-Williams L, Thao K, Harmer SL, Zilberman D (2013) The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell 153: 193-205
-
(2013)
Cell
, vol.153
, pp. 193-205
-
-
Zemach, A.1
Kim, M.Y.2
Hsieh, P.H.3
Coleman-Derr, D.4
Eshed-Williams, L.5
Thao, K.6
Harmer, S.L.7
Zilberman, D.8
-
51
-
-
84891701738
-
Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize
-
Zhang M, Xie S, Dong X, Zhao X, Zeng B, Chen J, Li H, Yang W, Zhao H, Wang G, et al (2014) Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize. Genome Res 24: 167-176
-
(2014)
Genome Res
, vol.24
, pp. 167-176
-
-
Zhang, M.1
Xie, S.2
Dong, X.3
Zhao, X.4
Zeng, B.5
Chen, J.6
Li, H.7
Yang, W.8
Zhao, H.9
Wang, G.10
-
52
-
-
73349104113
-
Active DNA demethylation mediated by DNA glycosylases
-
Zhu JK (2009) Active DNA demethylation mediated by DNA glycosylases. Annu Rev Genet 43: 143-166
-
(2009)
Annu Rev Genet
, vol.43
, pp. 143-166
-
-
Zhu, J.K.1
|