-
1
-
-
77649175453
-
Genomic instability-An evolving hallmark of cancer
-
Mar.
-
S. Negrini, V. G. Gorgoulis, and T. D. Halazonetis. (Mar. , 2010). Genomic instability-An evolving hallmark of cancer. Nat. Rev. Mol. Cell Biol. , [Online]. 11(3), pp. 220-228. Available: http:// www. ncbi. nlm. nih. gov/pubmed/20177397
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, Issue.3
, pp. 220-228
-
-
Negrini, S.1
Gorgoulis, V.G.2
Halazonetis, T.D.3
-
2
-
-
33745474120
-
Break-induced replication and recombinational telomere elongation in yeast
-
Jan.
-
M. J. McEachern and J. E. Haber. (Jan. , 2006). Break-induced replication and recombinational telomere elongation in yeast. Annu. Rev. Biochem. [Online]. 75, pp. 111-135. Available: http://www. ncbi. nlm. nih. gov/pubmed/16756487
-
(2006)
Annu. Rev. Biochem.
, vol.75
, pp. 111-135
-
-
McEachern, M.J.1
Haber, J.E.2
-
3
-
-
85016350482
-
Breakinduced replication and genome stability
-
Dec.
-
C. J. Sakofsky, S. Ayyar, and A. Malkova. (Dec. , 2012). Breakinduced replication and genome stability. Biomolecules [Online]. 2 (4), pp. 483-504. Available: http://www. ncbi. nlm. nih. gov/ pubmed/23767011
-
(2012)
Biomolecules
, vol.2
, Issue.4
, pp. 483-504
-
-
Sakofsky, C.J.1
Ayyar, S.2
Malkova, A.3
-
4
-
-
84870218426
-
Mutations arising during repair of chromosome breaks
-
Dec.
-
A. Malkova and J. E. Haber. (Dec. , 2012). Mutations arising during repair of chromosome breaks. Annu. Rev. Genetics. [Online]. 46, pp. 455-73. Available: http://www. ncbi. nlm. nih. gov/pubmed/ 23146099
-
(2012)
Annu. Rev. Genetics.
, vol.46
, pp. 455-473
-
-
Malkova, A.1
Haber, J.E.2
-
5
-
-
79952273242
-
Breakinduced replication is highly inaccurate
-
Jan.
-
A. Deem, A. Keszthelyi, T. Blackgrove, A. Vayl, B. Coffey, R. Mathur, A. Chabes, and A. Malkova. (Jan. , 2011). Breakinduced replication is highly inaccurate. PLoS Biol. [Online]. 9(2), p. e1000594. Available: http://www. pubmedcentral. nih. gov/ articlerender. fcgi?artid=3039667&tool=pmcentrez&rendertype= abstract
-
(2011)
PLoS Biol.
, vol.9
, Issue.2
, pp. e1000594
-
-
Deem, A.1
Keszthelyi, A.2
Blackgrove, T.3
Vayl, A.4
Coffey, B.5
Mathur, R.6
Chabes, A.7
Malkova, A.8
-
6
-
-
59249105978
-
A microhomologymediated break-induced replication model for the origin of human copy number variation
-
Jan.
-
P. J. Hastings, G. Ira, and J. R. Lupski. (Jan. , 2009). A microhomologymediated break-induced replication model for the origin of human copy number variation. PLoS Genetics [Online]. 5(1), p. e1000327. Available: http://www. pubmedcentral. nih. gov/articlerender. fcgi? artid=2621351&tool=pmcentrez&rendertype=abstract
-
(2009)
PLoS Genetics
, vol.5
, Issue.1
, pp. e1000327
-
-
Hastings, P.J.1
Ira, G.2
Lupski, J.R.3
-
7
-
-
0031737723
-
Chromosome breakinduced DNA replication leads to nonreciprocal translocations and telomere capture
-
Nov.
-
G. Bosco and J. E. Haber. (Nov. , 1998). Chromosome breakinduced DNA replication leads to nonreciprocal translocations and telomere capture. Genetics [Online]. 150(3), pp. 1037-1047. Available: http://www. pubmedcentral. nih. gov/articlerender. fc gi?artid=1460379&tool=pmcentrez&rendertype=abstract
-
(1998)
Genetics
, vol.150
, Issue.3
, pp. 1037-1047
-
-
Bosco, G.1
Haber, J.E.2
-
8
-
-
37349109667
-
A DNA replication mechanism for generating nonrecurrent rearrangements associated with genomic disorders
-
J. A. Lee, C. M. Carvalho, and J. R. Lupski. (2007). A DNA replication mechanism for generating nonrecurrent rearrangements associated with genomic disorders. Cell [Online]. 131(7), pp. 1235-1247. Available: http://www. sciencedirect. com/science/article/ pii/S0092867407015413
-
(2007)
Cell
, vol.131
, Issue.7
, pp. 1235-1247
-
-
Lee, J.A.1
Carvalho, C.M.2
Lupski, J.R.3
-
9
-
-
80053187043
-
MYCN amplicon junctions as tumor-specific targets forminimal residual disease detection in neuroblastoma
-
Nov.
-
H. Kryh, J. Abrahamsson, E. Jegeras, R.-M. Sjoberg, I. Devenney, P. Kogner, and T. Martinsson. (Nov. , 2011). MYCN amplicon junctions as tumor-specific targets forminimal residual disease detection in neuroblastoma. Int. J. Oncol. [Online]. 39(5), pp. 1063-1071. Available: http://www. researchgate. net/publication/51487326- MYCN-amplicon-junctions-as-tumor-specific-targets-for-minimal- residual- disease-detection-in-neuroblastoma
-
(2011)
Int. J. Oncol.
, vol.39
, Issue.5
, pp. 1063-1071
-
-
Kryh, H.1
Abrahamsson, J.2
Jegeras, E.3
Sjoberg, R.-M.4
Devenney, I.5
Kogner, P.6
Martinsson, T.7
-
10
-
-
79953328752
-
RAF gene fusion breakpoints in pediatric brain tumors are characterized by significant enrichment of sequence microhomology
-
Apr.
-
A. R. J. Lawson, G. F. L. Hindley, T. Forshew, R. G. Tatevossian, G. A. Jamie, G. P. Kelly, G. A. Neale, J. Ma, T. A. Jones, D. W. Ellison, and D. Sheer. (Apr. , 2011). RAF gene fusion breakpoints in pediatric brain tumors are characterized by significant enrichment of sequence microhomology. Genome Res. [Online]. 21(4), pp. 505-514. Available: http://genome. cshlp. org/content/21/4/505. short
-
(2011)
Genome Res.
, vol.21
, Issue.4
, pp. 505-514
-
-
Lawson, A.R.J.1
Hindley, G.F.L.2
Forshew, T.3
Tatevossian, R.G.4
Jamie, G.A.5
Kelly, G.P.6
Neale, G.A.7
Ma, J.8
Jones, T.A.9
Ellison, D.W.10
Sheer, D.11
-
11
-
-
84855293895
-
A conserved lysine residue of plant Whirly proteins is necessary for higher order protein assembly and protection against DNA damage
-
Jan.
-
L. Cappadocia, J.-S. Parent, E. Zampini, E. Lepage, J. Sygusch, and N. Brisson. (Jan. , 2012). A conserved lysine residue of plant Whirly proteins is necessary for higher order protein assembly and protection against DNA damage. Nucleic Acids Res. [Online]. 40(1), pp. 258-269. Available: http://nar. oxfordjournals. org/ content/40/1/258
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.1
, pp. 258-269
-
-
Cappadocia, L.1
Parent, J.-S.2
Zampini, E.3
Lepage, E.4
Sygusch, J.5
Brisson, N.6
-
12
-
-
84871027741
-
Human subtelomeric copy number gains suggest a DNA replication mechanism for formation: Beyond breakage-fusion-bridge for telomere stabilization
-
Dec.
-
S. A. Yatsenko, P. Hixson, E. K. Roney, D. A. Scott, C. P. Schaaf, Y.-T. Ng, R. Palmer, R. B. Fisher, A. Patel, S. W. Cheung, and J. R. Lupski. (Dec. , 2012). Human subtelomeric copy number gains suggest a DNA replication mechanism for formation: Beyond breakage-fusion-bridge for telomere stabilization. Human Genetics [Online]. 131(12), pp. 1895-1910. Available: http://www. pubmedcentral. nih. gov/articlerender. fcgi?artid=3493700&tool= pmcentrez&rendertype=abstract
-
(2012)
Human Genetics
, vol.131
, Issue.12
, pp. 1895-1910
-
-
Yatsenko, S.A.1
Hixson, P.2
Roney, E.K.3
Scott, D.A.4
Schaaf, C.P.5
Ng, Y.-T.6
Palmer, R.7
Fisher, R.B.8
Patel, A.9
Cheung, S.W.10
Lupski, J.R.11
-
13
-
-
34247611513
-
Template switching during break-induced replication
-
May
-
C. E. Smith, B. Llorente, and L. S. Symington. (May, 2007). Template switching during break-induced replication. Nature [Online]. 447(7140), pp. 102-105. Available: http://www. ncbi. nlm. nih. gov/ pubmed/17410126
-
(2007)
Nature
, vol.447
, Issue.7140
, pp. 102-105
-
-
Smith, C.E.1
Llorente, B.2
Symington, L.S.3
-
14
-
-
70449704529
-
Computational methods for discovering structural variation with next-generation sequencing
-
http://www.nature.com/nmeth/journal/v6/n11s/full/nmeth.1374.html. http://www.ncbi.nlm.nih.gov/pubmed/19844226. Nov.
-
P. Medvedev, M. Stanciu, and M. Brudno. (Nov. , 2009). Computational methods for discovering structural variation with next-generation sequencing. Nature Methods [Online]. 6 (11), pp. S13-20. Available: http://www. ncbi. nlm. nih. gov/ pubmed/19844226"> http://www. nature. com/nmeth/journal/ v6/n11s/full/nmeth. 1374. html http://www. ncbi. nlm. nih. gov/ pubmed/19844226
-
(2009)
Nature Methods
, vol.6
, Issue.11
, pp. S13-20
-
-
Medvedev, P.1
Stanciu, M.2
Brudno, M.3
-
15
-
-
84866440781
-
DELLY: Structural variant discovery by integrated paired-end and split-read analysis
-
Sep.
-
T. Rausch, T. Zichner, A. Schlattl, A. M. Stutz, V. Benes, and J. O. Korbel. (Sep. , 2012). DELLY: Structural variant discovery by integrated paired-end and split-read analysis. Bioinformatics [Online]. 28(18), pp. i333-i339. Available: http://www. pubmedcentral. nih. gov/articlerender. fcgi?artid=3436805&tool=pmcentrez&renderty pe=abstract
-
(2012)
Bioinformatics
, vol.28
, Issue.18
, pp. i333-i339
-
-
Rausch, T.1
Zichner, T.2
Schlattl, A.3
Stutz, A.M.4
Benes, V.5
Korbel, J.O.6
-
16
-
-
84870460670
-
PRISM: Pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants
-
Oct.
-
Y. Jiang, Y. Wang, and M. Brudno. (Oct. , 2012). PRISM: Pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants. Bioinformatics [Online]. 28 (20), pp. 2576-2583. Available: http://www. ncbi. nlm. nih. gov/ pubmed/22851530
-
(2012)
Bioinformatics
, vol.28
, Issue.20
, pp. 2576-2583
-
-
Jiang, Y.1
Wang, Y.2
Brudno, M.3
-
17
-
-
84861861291
-
A microhomology-mediated break-induced replication model for the origin of human copy number variation
-
Jun.
-
M. Gymrek, D. Golan, S. Rosset, and Y. Erlich. (Jun. , 2012). A microhomology-mediated break-induced replication model for the origin of human copy number variation. Genome Res. [Online]. 22(6), pp. 1154-1162. Available: http://www. pubmedcentral. nih. gov/articlerender. fcgi?artid=2621351&tool=pmcentrez&renderty pe=abstract
-
(2012)
Genome Res.
, vol.22
, Issue.6
, pp. 1154-1162
-
-
Gymrek, M.1
Golan, D.2
Rosset, S.3
Erlich, Y.4
-
18
-
-
67649884743
-
Fast and accurate short read alignment with burrows-wheeler transform
-
Jul.
-
H. Li and R. Durbin. (Jul. , 2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics [Online]. 25(14), pp. 1754-1760. Available: http://www. pubmedcentral. nih. gov/articlerender. fcgi?artid=2705234&tool=pmcentre z&rendertype=abstract
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
19
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Aug.
-
H. Li, B. Handsaker, A. Wysoker, T. Fennell, J. Ruan, N. Homer, G. Marth, G. Abecasis, and R. Durbin. (Aug. , 2009). The sequence alignment/map format and SAMtools. Bioinformatics [Online]. 25 (16), pp. 2078-2079. Available: http://www. pubmedcentral. nih. gov/articlerender. fcgi?artid=2723002&tool=pmcentrez&renderty pe=abstract
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
20
-
-
0004226401
-
Using and porting the GNU compiler collection
-
R. M. Stallman, "Using and porting the GNU compiler collection," Free Softw. Found. , no. 59, vol. 2, pp. 02 111-1307, 1989.
-
(1989)
Free Softw. Found.
, vol.2
, Issue.59
, pp. 02111-21307
-
-
Stallman, R.M.1
-
21
-
-
77951226627
-
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
-
Apr.
-
P. J. A. Cock, C. J. Fields, N. Goto, M. L. Heuer, and P. M. Rice. (Apr. , 2010). The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res. [Online]. 38(6), pp. 1767-1771. Available: http://www. pubmedcentral. nih. gov/articlerender. fcgi? artid=2847217&tool=pmcentrez&rendertype=abstract
-
(2010)
Nucleic Acids Res.
, vol.38
, Issue.6
, pp. 1767-1771
-
-
Cock, P.J.A.1
Fields, C.J.2
Goto, N.3
Heuer, M.L.4
Rice, P.M.5
-
22
-
-
84856770811
-
Direct comparisons of illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample
-
Jan.
-
C. Luo, D. Tsementzi, N. Kyrpides, T. Read, and K. T. Konstantinidis. (Jan. , 2012). Direct comparisons of illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample. PloS One [Online]. 7(2), p. e30087. Available: http:// www. pubmedcentral. nih. gov/articlerender. fcgi?artid=3277595& tool=pmcentrez&rendertype=abstract
-
(2012)
PloS One
, vol.7
, Issue.2
, pp. e30087
-
-
Luo, C.1
Tsementzi, D.2
Kyrpides, N.3
Read, T.4
Konstantinidis, K.T.5
-
23
-
-
42449130956
-
Break-induced replication: What is it and what is it for?
-
B. Llorente, C. Smith, and L. Symington. (2008). Break-induced replication: What is it and what is it for? Cell Cycle [Online]. 7(7), pp. 859-864. Available: http://www. landesbioscience. com/ journals/6/article/5613/
-
(2008)
Cell Cycle
, vol.7
, Issue.7
, pp. 859-864
-
-
Llorente, B.1
Smith, C.2
Symington, L.3
-
24
-
-
77953015096
-
A multilevel data integration resource for breast cancer study
-
Jun.
-
E. Mosca, R. Alfieri, I. Merelli, F. Viti, A. Calabria, and L. Milanesi. (Jun. , 2010). A multilevel data integration resource for breast cancer study. BMC Syst. Biol. [Online]. 4(1), p. 76. Available: http:// www. ncbi. nlm. nih. gov/pubmed/20177397
-
(2010)
BMC Syst. Biol.
, vol.4
, Issue.1
, pp. 76
-
-
Mosca, E.1
Alfieri, R.2
Merelli, I.3
Viti, F.4
Calabria, A.5
Milanesi, L.6
|