메뉴 건너뛰기




Volumn 10, Issue 5, 2015, Pages

Multi-faceted characterization of a novel luxr-repressible promoter library for Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

N (3 OXODODECANOYL)HOMOSERINE LACTONE; OLIGONUCLEOTIDE; TRANSCRIPTION FACTOR LUXR; GAMMA BUTYROLACTONE; HOMOSERINE LACTONE; LUXR AUTOINDUCER BINDING PROTEINS; REPRESSOR PROTEIN; TRANSACTIVATOR PROTEIN;

EID: 84938951356     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0126264     Document Type: Article
Times cited : (19)

References (57)
  • 1
    • 0027957161 scopus 로고
    • Quorum sensing in bacteria: The luxr-luxi family of cell density-responsive transcriptional regulators
    • PMID: 8288518
    • Fuqua WC, Winans SC, Greenberg PE (1994). Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators. Journal of Bacteriology 176(2):269-275. PMID: 8288518
    • (1994) Journal of Bacteriology , vol.176 , Issue.2 , pp. 269-275
    • Fuqua, W.C.1    Winans, S.C.2    Greenberg, P.E.3
  • 2
    • 0029942280 scopus 로고    scopus 로고
    • Quorum sensing: A population-density component in the determination of bacterial phenotype
    • PMID: 8744355
    • Swift S, Throup JP, Williams P, Salmond GP, Stewart GS (1996). Quorum sensing: a population-density component in the determination of bacterial phenotype. Trends in Biochemical Sciences 21(6):214-219. PMID: 8744355
    • (1996) Trends in Biochemical Sciences , vol.21 , Issue.6 , pp. 214-219
    • Swift, S.1    Throup, J.P.2    Williams, P.3    Salmond, G.P.4    Stewart, G.S.5
  • 5
    • 53349099745 scopus 로고    scopus 로고
    • Healthcare epidemiology: Quorum sensing: Bacteria talk sense
    • PMID: 18781869
    • Sifri CD (2008). Healthcare epidemiology: quorum sensing: bacteria talk sense. Clinical Infectious Diseases 47(8):1070-1076. doi: 10.1086/592072 PMID: 18781869
    • (2008) Clinical Infectious Diseases , vol.47 , Issue.8 , pp. 1070-1076
    • Sifri, C.D.1
  • 6
    • 0031033798 scopus 로고    scopus 로고
    • Quorum sensing in vibrio fischeri: Essential elements for activation of the luminescence genes
    • PMID: 8990313
    • Stevens AM, Greenberg EP (1997). Quorum sensing in Vibrio fischeri: essential elements for activation of the luminescence genes. Journal of Bacteriology 179(2):557-562. PMID: 8990313
    • (1997) Journal of Bacteriology , vol.179 , Issue.2 , pp. 557-562
    • Stevens, A.M.1    Greenberg, E.P.2
  • 7
    • 79957929747 scopus 로고    scopus 로고
    • Characterization of a synthetic bacterial self-destruction device for programmed cell death and for recombinant proteins release
    • PMID: 21645422
    • Pasotti L, Zucca S, Lupotto M, Cusella De Angelis MG, Magni P (2011). Characterization of a synthetic bacterial self-destruction device for programmed cell death and for recombinant proteins release. Journal of Biological Engineering 5.8. doi: 10.1186/1754-1611-5-8 PMID: 21645422
    • (2011) Journal of Biological Engineering 5 , vol.8
    • Pasotti, L.1    Zucca, S.2    Lupotto, M.3    Cusella De Angelis, M.G.4    Magni, P.5
  • 8
    • 80055035853 scopus 로고    scopus 로고
    • Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology
    • PMID: 22009040
    • Wang B, Kitney RI, Joly N, Buck M (2011). Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology. Nature Communications 2:508. doi: 10.1038/ncomms1516 PMID: 22009040
    • (2011) Nature Communications , vol.2 , pp. 508
    • Wang, B.1    Kitney, R.I.2    Joly, N.3    Buck, M.4
  • 9
    • 84868619337 scopus 로고    scopus 로고
    • Genetic programs constructed from layered logic gates in single cells
    • PMID: 23041931
    • Moon TS, Lou C, Tamsir A, Stanton BC, Voigt CA (2012). Genetic programs constructed from layered logic gates in single cells. Nature 491(7423):249-253. doi: 10.1038/nature11516 PMID: 23041931
    • (2012) Nature , vol.491 , Issue.7423 , pp. 249-253
    • Moon, T.S.1    Lou, C.2    Tamsir, A.3    Stanton, B.C.4    Voigt, C.A.5
  • 10
    • 46949091517 scopus 로고    scopus 로고
    • Refinement and standardization of synthetic biological parts and devices
    • PMID: 18612302
    • Canton B, Labno A, Endy D (2008). Refinement and standardization of synthetic biological parts and devices. Nature Biotechnology 26(7):787-793. doi: 10.1038/nbt1413 PMID: 18612302
    • (2008) Nature Biotechnology , vol.26 , Issue.7 , pp. 787-793
    • Canton, B.1    Labno, A.2    Endy, D.3
  • 11
    • 84864076596 scopus 로고    scopus 로고
    • Bottom-up engineering of biological systems through standard bricks: A modularity study on basic parts and devices
    • PMID: 22911685
    • Pasotti L, Politi N, Zucca S, Cusella De Angelis MG, Magni P (2012). Bottom-up engineering of biological systems through standard bricks: a modularity study on basic parts and devices. PLoS ONE, 7(7): e39407. doi: 10.1371/journal.pone.0039407 PMID: 22911685
    • (2012) PLoS ONE , vol.7 , Issue.7 , pp. e39407
    • Pasotti, L.1    Politi, N.2    Zucca, S.3    Cusella De Angelis, M.G.4    Magni, P.5
  • 12
    • 17844374314 scopus 로고    scopus 로고
    • A synthetic multicellular system for programmed pattern formation
    • Weiss PMID: 15858574
    • Basu S, Gerchman Y, Collins CH, Arnold FH, Weiss (2005). A synthetic multicellular system for programmed pattern formation. Nature 434(7037):1130-1134. PMID: 15858574
    • (2005) Nature , vol.434 , Issue.7037 , pp. 1130-1134
    • Basu, S.1    Gerchman, Y.2    Collins, C.H.3    Arnold, F.H.4
  • 14
    • 1942467023 scopus 로고    scopus 로고
    • Programmed population control by cell-cell communication and regulated killing
    • PMID: 15064770
    • You L, Cox RS 3rd, Weiss R, Arnold FH (2004). Programmed population control by cell-cell communication and regulated killing. Nature 428(6985):868-871. PMID: 15064770
    • (2004) Nature , vol.428 , Issue.6985 , pp. 868-871
    • You, L.1    Cox, R.S.2    Weiss, R.3    Arnold, F.H.4
  • 16
    • 29144482539 scopus 로고    scopus 로고
    • Environmentally controlled invasion of cancer cells by engineered bacteria
    • PMID: 16330045
    • Anderson JC, Clarke EJ, Arkin AP, Voigt CA (2006) Environmentally controlled invasion of cancer cells by engineered bacteria. Journal of Molecular Biology 355: 619-627. PMID: 16330045
    • (2006) Journal of Molecular Biology , vol.355 , pp. 619-627
    • Anderson, J.C.1    Clarke, E.J.2    Arkin, A.P.3    Voigt, C.A.4
  • 17
    • 78651397316 scopus 로고    scopus 로고
    • Robust multicellular computing using genetically encoded nor gates and chemical 'wires'
    • PMID: 21150903
    • Tamsir A, Tabor JJ, Voigt CA (2011), Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'. Nature 469(7329):212-215. doi: 10.1038/nature09565 PMID: 21150903
    • (2011) Nature , vol.469 , Issue.7329 , pp. 212-215
    • Tamsir, A.1    Tabor, J.J.2    Voigt, C.A.3
  • 18
    • 79959927048 scopus 로고    scopus 로고
    • Multiplexing and demultiplexing logic functions for computing signal processing tasks in synthetic biology
    • PMID: 21681964
    • Pasotti L, Quattrocelli M, Galli D, Cusella De Angelis MG, Magni P (2011) Multiplexing and demultiplexing logic functions for computing signal processing tasks in synthetic biology. Biotechnology Journal 6: 784-795. doi: 10.1002/biot.201100080 PMID: 21681964
    • (2011) Biotechnology Journal , vol.6 , pp. 784-795
    • Pasotti, L.1    Quattrocelli, M.2    Galli, D.3    Cusella De Angelis, M.G.4    Magni, P.5
  • 20
    • 75149191906 scopus 로고    scopus 로고
    • A synchronized quorum of genetic clocks
    • PMID: 20090747
    • Danino T, Mondragón-Palomino O, Tsimring L, Hasty J (2010). A synchronized quorum of genetic clocks. Nature 463(7279):326-30. doi: 10.1038/nature08753 PMID: 20090747
    • (2010) Nature , vol.463 , Issue.7279 , pp. 326-330
    • Danino, T.1    Mondragón-Palomino, O.2    Tsimring, L.3    Hasty, J.4
  • 21
    • 84855440933 scopus 로고    scopus 로고
    • A sensing array of radically coupled genetic 'biopixels'
    • PMID: 22178928
    • Prindle A, Samayoa P, Razinkov I, Danino T, Tsimring LS, Hasty J (2011). A sensing array of radically coupled genetic 'biopixels'. Nature. 481(7379):39-44. doi: 10.1038/nature10722 PMID: 22178928
    • (2011) Nature , vol.481 , Issue.7379 , pp. 39-44
    • Prindle, A.1    Samayoa, P.2    Razinkov, I.3    Danino, T.4    Tsimring, L.S.5    Hasty, J.6
  • 23
    • 84868246018 scopus 로고    scopus 로고
    • A synthetic biology approach to understanding cellular information processing
    • PMID: 23411668
    • Riccione KA, Smith RP, Lee AJ, You L (2012). A synthetic biology approach to understanding cellular information processing. ACS Synthetic Biology 1(9):389-402. PMID: 23411668
    • (2012) ACS Synthetic Biology , vol.1 , Issue.9 , pp. 389-402
    • Riccione, K.A.1    Smith, R.P.2    Lee, A.J.3    You, L.4
  • 24
    • 84921693738 scopus 로고    scopus 로고
    • Engineered cell-cell communication and its applications
    • PMID: 24002441
    • Payne S, You L (2014). Engineered cell-cell communication and its applications. Advances in Biochemical Engineering/Biotechnology 146:97-121. doi: 10.1007/10-2013-249 PMID: 24002441
    • (2014) Advances in Biochemical Engineering/Biotechnology , vol.146 , pp. 97-121
    • Payne, S.1    You, L.2
  • 25
    • 38349096406 scopus 로고    scopus 로고
    • Implications of rewiring bacterial quorum sensing
    • PMID: 18039819
    • Haseltine EL, Arnold FH (2008). Implications of rewiring bacterial quorum sensing. Applied and Environmental Microbiology 74(2):437-45. PMID: 18039819
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.2 , pp. 437-445
    • Haseltine, E.L.1    Arnold, F.H.2
  • 26
    • 84864102241 scopus 로고    scopus 로고
    • Characterization of an inducible promoter in different DNA copy number conditions
    • PMID: 23320832
    • Zucca S, Pasotti L, Mazzini G, Cusella De Angelis MG, Magni P (2012). Characterization of an inducible promoter in different DNA copy number conditions. BMC Bioinformatics 13:S11. doi: 10.1186/1471-2105-13-S13-S11 PMID: 23320832
    • (2012) BMC Bioinformatics , vol.13 , pp. S11
    • Zucca, S.1    Pasotti, L.2    Mazzini, G.3    Cusella De Angelis, M.G.4    Magni, P.5
  • 27
    • 84899020101 scopus 로고    scopus 로고
    • Generic metric to quantify quorum sensing activation dynamics
    • PMID: 24011134
    • Pai A, Srimani JK, Tanouchi Y, You L (2013). Generic Metric to Quantify Quorum Sensing Activation Dynamics. ACS Synthetic Biology 3(4):220-227. doi: 10.1021/sb400069w PMID: 24011134
    • (2013) ACS Synthetic Biology , vol.3 , Issue.4 , pp. 220-227
    • Pai, A.1    Srimani, J.K.2    Tanouchi, Y.3    You, L.4
  • 28
    • 84870372913 scopus 로고    scopus 로고
    • Optimality and robustness in quorum sensing (qs)-mediated regulation of a costly public good enzyme
    • PMID: 23144221
    • Pai A, Tanouchi Y, You L (2012). Optimality and robustness in quorum sensing (QS)-mediated regulation of a costly public good enzyme. Proceedings of the National Academy of Sciences of the United States of America 109(48):19810-5. doi: 10.1073/pnas.1211072109 PMID: 23144221
    • (2012) Proceedings of the National Academy of Sciences of the United States of America , vol.109 , Issue.48 , pp. 19810-19815
    • Pai, A.1    Tanouchi, Y.2    You, L.3
  • 29
    • 0028302588 scopus 로고
    • Interchangeability and specificity of components from the quorum-sensing regulatory systems of vibrio fischeri and pseudomonas aeruginosa
    • PMID: 8188610
    • Gray KM, Passador L, Iglewski BH, Greenberg EP (1994). Interchangeability and specificity of components from the quorum-sensing regulatory systems of Vibrio fischeri and Pseudomonas aeruginosa. Journal of Bacteriology 176(10):3076-80. PMID: 8188610
    • (1994) Journal of Bacteriology , vol.176 , Issue.10 , pp. 3076-3080
    • Gray, K.M.1    Passador, L.2    Iglewski, B.H.3    Greenberg, E.P.4
  • 31
    • 36249017917 scopus 로고    scopus 로고
    • Programming gene expression with combinatorial promoters
    • PMID: 18004278
    • Cox RS 3rd, Surette MG, Elowitz MB (2007). Programming gene expression with combinatorial promoters. Molecular Systems Biology 3:145. PMID: 18004278
    • (2007) Molecular Systems Biology , vol.3 , pp. 145
    • Cox, R.S.1    Surette, M.G.2    Elowitz, M.B.3
  • 32
    • 84886485785 scopus 로고    scopus 로고
    • Engineering the esar promoter for tunable quorum sensing-dependent gene expression
    • PMID: 23879176
    • Shong J, Collins CH (2013). Engineering the esaR promoter for tunable quorum sensing-dependent gene expression. ACS Synthetic Biology 2(10):568-75. PMID: 23879176
    • (2013) ACS Synthetic Biology , vol.2 , Issue.10 , pp. 568-575
    • Shong, J.1    Collins, C.H.2
  • 33
    • 84898954540 scopus 로고    scopus 로고
    • Quorum sensing-modulated and-gate promoters control gene expression in response to a combination of endogenous and exogenous signals
    • PMID: 24175658
    • Shong J, Collins CH (2014). Quorum sensing-modulated AND-gate promoters control gene expression in response to a combination of endogenous and exogenous signals. ACS Synth Biol. 3(4):238-46. doi: 10.1021/sb4000965 PMID: 24175658
    • (2014) ACS Synth Biol , vol.3 , Issue.4 , pp. 238-246
    • Shong, J.1    Collins, C.H.2
  • 34
    • 0033984062 scopus 로고    scopus 로고
    • Conversion of the vibrio fischeri transcriptional activator, luxr, to a repressor
    • PMID: 10633117
    • Egland KA, Greenberg EP (2000). Conversion of the Vibrio fischeri transcriptional activator, LuxR, to a repressor. Journal of Bacteriology 182(3):805-11. PMID: 10633117
    • (2000) Journal of Bacteriology , vol.182 , Issue.3 , pp. 805-811
    • Egland, K.A.1    Greenberg, E.P.2
  • 35
    • 84899012810 scopus 로고    scopus 로고
    • Evolved quorum sensing regulator, lsrr, for altered switching functions
    • PMID: 24111753
    • Adams BL, Carter KK, Guo M, Wu HC, Tsao CY, Sintim HO, et al. (2014). Evolved Quorum sensing regulator, LsrR, for altered switching functions. ACS Synthetic Biology 3(4):210-9. doi: 10.1021/sb400068z PMID: 24111753
    • (2014) ACS Synthetic Biology , vol.3 , Issue.4 , pp. 210-219
    • Adams, B.L.1    Carter, K.K.2    Guo, M.3    Wu, H.C.4    Tsao, C.Y.5    Sintim, H.O.6
  • 36
    • 84911485288 scopus 로고    scopus 로고
    • Advances and computational tools towards predictable design in biological engineering
    • PMID: 25161694
    • Pasotti L, Zucca S (2014). Advances and computational tools towards predictable design in biological engineering. Computational and Mathematical Methods in Medicine 2014:369681. doi: 10.1155/2014/369681 PMID: 25161694
    • (2014) Computational and Mathematical Methods in Medicine , vol.2014 , pp. 369681
    • Pasotti, L.1    Zucca, S.2
  • 37
    • 31444433490 scopus 로고    scopus 로고
    • Synthetic promoter libraries-tuning of gene expression
    • PMID: 16406119
    • Hammer K, Mijakovic I, Jensen PR (2006). Synthetic promoter libraries-tuning of gene expression. Trends in Biotechnology 24(2):53-55. PMID: 16406119
    • (2006) Trends in Biotechnology , vol.24 , Issue.2 , pp. 53-55
    • Hammer, K.1    Mijakovic, I.2    Jensen, P.R.3
  • 38
    • 79951565301 scopus 로고    scopus 로고
    • Design, construction and characterization of a set of insulated bacterial promoters
    • PMID: 20843779
    • Davis JH, Rubin AJ, Sauer RT (2011). Design, construction and characterization of a set of insulated bacterial promoters. Nucleic Acids Research 39(3):1131-41. doi: 10.1093/nar/gkq810 PMID: 20843779
    • (2011) Nucleic Acids Research , vol.39 , Issue.3 , pp. 1131-1141
    • Davis, J.H.1    Rubin, A.J.2    Sauer, R.T.3
  • 40
    • 0036250071 scopus 로고    scopus 로고
    • Modulation of gene expression made easy
    • PMID: 11976114
    • Solem C, Jensen PR (2002). Modulation of gene expression made easy. Applied and Environmental Microbiology 68(5):2397-2403. PMID: 11976114
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.5 , pp. 2397-2403
    • Solem, C.1    Jensen, P.R.2
  • 41
    • 84884174570 scopus 로고    scopus 로고
    • Synthesis and screening of regulatory component libraries for synthetic biology
    • Ellis T (2009). Synthesis and screening of regulatory component libraries for synthetic biology. Nature Protocol Exchange. doi: 10.1038/nprot.2009.79
    • (2009) Nature Protocol Exchange
    • Ellis, T.1
  • 42
  • 45
    • 45149118469 scopus 로고    scopus 로고
    • Engineering biobrick vectors from biobrick parts
    • PMID: 18271947
    • Shetty RP, Endy D, Knight TF (2008). Engineering BioBrick vectors from BioBrick parts. Journal of Biological Engineering 2:1. doi: 10.1186/1754-1611-2-1 PMID: 18271947
    • (2008) Journal of Biological Engineering , vol.2 , pp. 1
    • Shetty, R.P.1    Endy, D.2    Knight, T.F.3
  • 48
    • 79957534528 scopus 로고    scopus 로고
    • The ribosome binding site calculator
    • PMID 21601672
    • Salis HM (2011). The ribosome binding site calculator. Methods in Enzymology 498:19-42. doi: 10. 1016/B978-0-12-385120-8.00002-4 PMID: 21601672
    • (2011) Methods in Enzymology , vol.498 , pp. 19-42
    • Salis, H.M.1
  • 49
    • 84877256871 scopus 로고    scopus 로고
    • A standard vector for the chromosomal integration and characterization of biobrick parts in Escherichia coli
    • PMID: 23663425
    • Zucca S, Pasotti L, Politi N, Cusella De Angelis MG, Magni P (2013). A standard vector for the chromosomal integration and characterization of BioBrick parts in Escherichia coli. Journal of biological engineering 7:12. doi: 10.1186/1754-1611-7-12 PMID: 23663425
    • (2013) Journal of Biological Engineering , vol.7 , pp. 12
    • Zucca, S.1    Pasotti, L.2    Politi, N.3    Cusella De Angelis, M.G.4    Magni, P.5
  • 50
    • 70449377156 scopus 로고    scopus 로고
    • Gemini, a bifunctional enzymatic and fluorescent reporter of gene expression
    • PMID: 19888458
    • Martin L, Che A, Endy D (2009). Gemini, a bifunctional enzymatic and fluorescent reporter of gene expression. PLoS One 4(11):e7569. doi: 10.1371/journal.pone.0007569 PMID: 19888458
    • (2009) PLoS One , vol.4 , Issue.11 , pp. e7569
    • Martin, L.1    Che, A.2    Endy, D.3
  • 51
    • 84875720517 scopus 로고    scopus 로고
    • Precise and reliable gene expression via standard transcription and translation initiation elements
    • PMID: 23474465
    • Mutalik VK, Guimaraes JC, Cambray G, Lam C, Christoffersen MJ, Mai QA, et al. (2013). Precise and reliable gene expression via standard transcription and translation initiation elements. Nature Methods 10(4):354-60. doi: 10.1038/nmeth.2404 PMID: 23474465
    • (2013) Nature Methods , vol.10 , Issue.4 , pp. 354-360
    • Mutalik, V.K.1    Guimaraes, J.C.2    Cambray, G.3    Lam, C.4    Christoffersen, M.J.5    Mai, Q.A.6
  • 53
    • 15544388848 scopus 로고    scopus 로고
    • Noise propagation in gene networks
    • PMID: 15790857
    • Pedraza JM, van Oudenaarden A (2005). Noise propagation in gene networks. Science 307 (5717):1965-9. PMID: 15790857
    • (2005) Science , vol.307 , Issue.5717 , pp. 1965-1969
    • Pedraza, J.M.1    Van Oudenaarden, A.2
  • 54
    • 66149172363 scopus 로고    scopus 로고
    • Diversity-based model-guided construction of synthetic gene networks with predicted functions
    • PMID: 19377462
    • Ellis T, Wang X, Collins JJ (2009). Diversity-based, model-guided construction of synthetic gene networks with predicted functions, Nature Biotechnology 27:465-471. doi: 10.1038/nbt.1536 PMID: 19377462
    • (2009) Nature Biotechnology , vol.27 , pp. 465-471
    • Ellis, T.1    Wang, X.2    Collins, J.J.3
  • 55
    • 84858609338 scopus 로고    scopus 로고
    • Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology
    • Blount BA, Weenink T, Vasylechko S, Ellis T (2012). Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology. PLoS ONE 7(3):e3327.
    • (2012) PLoS ONE , vol.7 , Issue.3 , pp. e3327
    • Blount, B.A.1    Weenink, T.2    Vasylechko, S.3    Ellis, T.4
  • 56
    • 31444451679 scopus 로고    scopus 로고
    • Response to hammer et al tuning genetic control-importance of thorough promoter characterization versus generating promoter diversity
    • PMID: 16380177
    • Fischer CR, Alper H, Nevoigt E, Jensen KL, Stephanopoulos G (2006). Response to Hammer et al.: Tuning genetic control-importance of thorough promoter characterization versus generating promoter diversity. Trends in Biotechnology 24(2):55-6. PMID: 16380177
    • (2006) Trends in Biotechnology , vol.24 , Issue.2 , pp. 55-56
    • Fischer, C.R.1    Alper, H.2    Nevoigt, E.3    Jensen, K.L.4    Stephanopoulos, G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.