Cloning, Characterization and Bioinformatics Analysis of Novel Cytosine Deaminase from Escherichia coli AGH09

International Journal of Peptide Research and Therapeutics

Volumn 21, Issue 3, 2015, Pages 365-374

  Gholami, Ahmad ^a,b   Shahin, Samaneh ^a,b   Mohkam, Milad ^a,b   Nezafat, Navid ^a   Ghasemi, Younes ^a,b  

^a SHIRAZ UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^b SHIRAZ UNIVERSITY OF MEDICAL SCIENCES   (Iran)

Author keywords

Bioinformatics analysis; Cytosine deaminase; Enzyme prodrug; Escherichia coli

Indexed keywords

COPPER CHLORIDE; CYTOSINE DEAMINASE; FERROUS CHLORIDE; MAGNESIUM CHLORIDE; RECOMBINANT ENZYME; SODIUM CHLORIDE; ZINC CHLORIDE;

ALPHA HELIX; ARTICLE; BACTERIUM IDENTIFICATION; BIOINFORMATICS; CONTROLLED STUDY; CRYSTAL STRUCTURE; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME PURIFICATION; ESCHERICHIA COLI; HYDROPHILICITY; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENETIC TREE; PHYSICAL CHEMISTRY; PROTEIN EXPRESSION; PROTEIN SECONDARY STRUCTURE; SEQUENCE ALIGNMENT; THERMOSTABILITY;

ESCHERICHIA COLI;

EID: 84938423667     PISSN: 15733149     EISSN: 15733904     Source Type: Journal    
DOI: 10.1007/s10989-015-9465-9     Document Type: Article

References (31)

1. Alberts B et al (2002) Molecular biology of the cell, 4th edn. Garland Science, New York
2. Basile KJ, Aplin AE (2011) Resistance to chemotherapy: short-term drug tolerance and stem cell-like subpopulations. Adv Pharmacol 65:315-334
3. Buchan DWA, Minneci F, Nugent TCO, Bryson K, Jones DT (2013) Scalable web services for the PSIPRED protein analysis workbench. Nucleic Acids Res 41:W349-W357
4. Ceroni A, Passerini A, Vullo A, Frasconi P (2006) DISULFIND: a disulfide bonding state and cysteine connectivity prediction server. Nucleic Acids Res 34:177-181
5. Combet C, Jambon M, Deleage G, Geourjon C (2002) Geno3D: automatic comparative molecular modelling of protein. Bioinformatics 18:213-214
6. Domin BA, Mahony WB, Zimmerman TP (1993) Transport of 5-fluorouracil and uracil into human erythrocytes. Biochem Pharmacol 46:503-510
7. Freytag SO et al (2007) Replication-competent adenovirus-mediated suicide gene therapy with radiation in a preclinical model of pancreatic cancer. Mol Ther 15:1600-1606
8. Geourjon C, Deleage G (1995) SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments. Comput Appl Biosci 11:681-684
9. Ghasemi Y, Mohkam M, Ghasemian A, Rasoul-Amini S (2014) Experimental design of medium optimization for invertase production by Pichia sp. J Food Sci Tech 51:267-275
10. Hekkelman ML, te Beek TAH, Pettifer SR, Thorne D, Attwood TK, Vriend G (2010) WIWS: a protein structure bioinformatics web service collection. Nucleic Acids Res 38:W719-W723
11. Hooda V, Babu Gundala P, Chinthala P (2012) Sequence analysis and homology modeling of peroxidase from Medicago sativa. Bioinformation 8:974
12. Kaliberov SA, Chiz S, Kaliberova LN, Krendelchtchikova V, Della Manna D, Zhou T, Buchsbaum DJ (2005) Combination of cytosine deaminase suicide gene expression with DR5 antibody treatment increases cancer cell cytotoxicity. Cancer Gene Ther 13:203-214
13. Katsuragi T, Sakai T, Ky Matsumoto, Tonomura K (1986) Cytosine Deaminase from Escherichia coli: production purification, and some characteristics. Agric Biol Chem 50:1721-1730
14. Katsuragi T, Sonoda T, Matsumoto Ky, Matsumoto Ky, Tonomura K (1989) Purification and some properties of cytosine deaminase from Bakers' yeast. Agric Biol Chem 53:1313-1319
15. Kuriyama S et al (1999) Cytosine deaminase-fluorocytosine gene therapy can induce efficient anti-tumor effects and protective immunity in immunocompetent mice but not in athymic nude mice. Int J Cancer 81:592-597
16. Laskowski RA, MacArthur MW, Moss DS, Thornton JM (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Crystallogr 26:283-291
17. Liaw S-H, Chang Y-J, Lai C-T, Chang H-C, Chang G-G (2004) Crystal structure of Bacillus subtilis guanine deaminase the first domain-swapped structure in the cytidine deaminase superfamily. J Biol Chem 279:35479-35485
18. Mahan SD, Ireton GC, Knoeber C, Stoddard BL, Black ME (2004) Random mutagenesis and selection of Escherichia coli cytosine deaminase for cancer gene therapy. Protein Eng Des Sel 17:625-633
19. Mullen CA, Kilstrup M, Blaese RM (1992) Transfer of the bacterial gene for cytosine deaminase to mammalian cells confers lethal sensitivity to 5-fluorocytosine: a negative selection system. Proc Natl Acad of Sci 89:33-37
20. Nemunaitis J et al (2003) Pilot trial of genetically modified, attenuated Salmonella expressing the E. coli cytosine deaminase gene in refractory cancer patients. Cancer Gene Ther 10:737-744
21. Nezafat N, Ghasemi Y, Javadi G, Khoshnoud MJ, Omidinia E (2014) A novel multi-epitope peptide vaccine against cancer: an in silico approach. J Theor Biol 349:121-134
22. Ohwada A, Hirschowitz EA, Crystal RG (1996) Regional delivery of an adenovirus vector containing the Escherichia coli cytosine deaminase gene to provide local activation of 5-fluorocytosine to suppress the growth of colon carcinoma metastatic to liver. Hum Gene Ther 7:1567-1576
23. Porter DJ, Austin EA (1993) Cytosine deaminase. The roles of divalent metal ions in catalysis. J Biol Chem 268:24005-24011
24. Sambrook J, Russell DW, Russell DW (2001) Molecular cloning: a laboratory manual, vol 1. Cold Spring Harbor Laboratory Press Cold Spring Harbor, New York
25. Singh RP, Singh RN, Srivastava MK, Srivastava AK, Kumar S, Dubey RC, Sharma AK (2012) Structure prediction and analysis of MxaF from obligate, facultative and restricted facultative methylobacterium. Bioinformation 8:1042-1046
26. Singh Y, Gundampati RK, Jagannadham MV, Srivastava SK (2013) Extracellular L-asparaginase from a protease-deficient Bacillus aryabhattai ITBHU02: purification, biochemical characterization, and evaluation of antineoplastic activity in vitro. Appl Biochem Biot 171:1759-1774
27. Wei K, Huber BE (1996) Cytosine deaminase gene as a positive selection marker. J Biol Chem 271:3812-3816
28. West TP, Shanley MS, O'Donovan GA (1982) Purification and some properties of cytosine deaminase from Salmonella typhimurium. BBA Gen Subj 719:251-258
29. Zamani M, Nezafat N, Negahdaripour M, Dabbagh F, Ghasemi Y (2015) In silico evaluation of different signal peptides for the secretory production of human growth hormone in E. coli. Int J Pept Res Ther:1-8
30. Zanna H, Nok A, Ibrahim S, Inuwa H (2012) Purification and characterization of Aspergillus parasiticus cytosine deaminase for possible deployment in suicide gene therapy. Adv Biol Chem 2:152-159
31. Zanna H, Nok AJ, Ibrahim S, Inuwa HM (2013) Stabilization of Aspergillus parasiticus cytosine deaminase by immobilization on calcium alginate beads improved enzyme operational stability. J Enzym Inhib Med Chem 28:1217-1220