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Volumn 8, Issue 1, 2015, Pages

The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution

Author keywords

Ecology; Epi allele; Epi polymorphism; Epigenomics; Evolution; Histone modification; Natural strains; Yeast

Indexed keywords

HISTONE;

EID: 84938365529     PISSN: None     EISSN: 17568935     Source Type: Journal    
DOI: 10.1186/s13072-015-0019-3     Document Type: Article
Times cited : (9)

References (60)
  • 2
    • 70350716441 scopus 로고    scopus 로고
    • Allele-specific DNA methylation in mouse strains is mainly determined by cis-acting sequences
    • 1:CAS:528:DC%2BD1MXhsVSmtLnK 2775599 19687144
    • Schilling E, Chartouni CE, Rehli M. Allele-specific DNA methylation in mouse strains is mainly determined by cis-acting sequences. Genome Res. 2009;19:2028-35.
    • (2009) Genome Res , vol.19 , pp. 2028-2035
    • Schilling, E.1    Chartouni, C.E.2    Rehli, M.3
  • 3
    • 84864710693 scopus 로고    scopus 로고
    • Natural epigenetic variation in the female great roundleaf bat (Hipposideros armiger) populations
    • 1:CAS:528:DC%2BC38XhtFSisrnN 22773086
    • Liu S, Sun K, Jiang T, Ho JP, Liu B, Feng J. Natural epigenetic variation in the female great roundleaf bat (Hipposideros armiger) populations. Mol Genet Genomics. 2012;287:643-50.
    • (2012) Mol Genet Genomics , vol.287 , pp. 643-650
    • Liu, S.1    Sun, K.2    Jiang, T.3    Ho, J.P.4    Liu, B.5    Feng, J.6
  • 4
    • 77649204292 scopus 로고    scopus 로고
    • Genetic control of individual differences in gene-specific methylation in human brain
    • 1:CAS:528:DC%2BC3cXlt1KntLc%3D 2833385 20215007
    • Zhang D, Cheng L, Badner JA, Chen C, Chen Q, Luo W, et al. Genetic control of individual differences in gene-specific methylation in human brain. Am J Hum Genet. 2010;86:411-9.
    • (2010) Am J Hum Genet , vol.86 , pp. 411-419
    • Zhang, D.1    Cheng, L.2    Badner, J.A.3    Chen, C.4    Chen, Q.5    Luo, W.6
  • 7
    • 84887320563 scopus 로고    scopus 로고
    • Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription
    • 1:CAS:528:DC%2BC3sXhslWlsLrL 24136355
    • Kilpinen H, Waszak SM, Gschwind AR, Raghav SK, Witwicki RM, Orioli A, et al. Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription. Science. 2013;342:744-7.
    • (2013) Science , vol.342 , pp. 744-747
    • Kilpinen, H.1    Waszak, S.M.2    Gschwind, A.R.3    Raghav, S.K.4    Witwicki, R.M.5    Orioli, A.6
  • 9
    • 84887322043 scopus 로고    scopus 로고
    • Identification of Genetic variants that affect histone modifications in human cells
    • 1:CAS:528:DC%2BC3sXhslWlsLrE 3947669 24136359
    • McVicker G, van de Geijn B, Degner JF, Cain CE, Banovich NE, Raj A, et al. Identification of Genetic variants that affect histone modifications in human cells. Science. 2013;342:747-9.
    • (2013) Science , vol.342 , pp. 747-749
    • McVicker, G.1    Van De Geijn, B.2    Degner, J.F.3    Cain, C.E.4    Banovich, N.E.5    Raj, A.6
  • 10
    • 77950854479 scopus 로고    scopus 로고
    • Heritable individual-specific and allele-specific chromatin signatures in humans
    • 1:CAS:528:DC%2BC3cXkt1Cgt7g%3D 2929018 20299549
    • McDaniell R, Lee BK, Song L, Liu Z, Boyle AP, Erdos MR, et al. Heritable individual-specific and allele-specific chromatin signatures in humans. Science. 2010;328:235-9.
    • (2010) Science , vol.328 , pp. 235-239
    • McDaniell, R.1    Lee, B.K.2    Song, L.3    Liu, Z.4    Boyle, A.P.5    Erdos, M.R.6
  • 11
    • 84884691455 scopus 로고    scopus 로고
    • Regulation of the boundaries of accessible chromatin
    • 1:CAS:528:DC%2BC3sXhsFKqu7bP 3772044 24068952
    • Chai X, Nagarajan S, Kim K, Lee K, Choi JK. Regulation of the boundaries of accessible chromatin. PLoS Genet. 2013;9:e1003778.
    • (2013) PLoS Genet , vol.9
    • Chai, X.1    Nagarajan, S.2    Kim, K.3    Lee, K.4    Choi, J.K.5
  • 12
    • 80051663971 scopus 로고    scopus 로고
    • Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids
    • 1:CAS:528:DC%2BC3MXhtFSqtbfE 21554454
    • Moghaddam AMB, Roudier F, Seifert M, Bérard C, Magniette M-LM, Ashtiyani RK, et al. Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids. Plant J. 2011;67:691-700.
    • (2011) Plant J , vol.67 , pp. 691-700
    • Moghaddam, A.M.B.1    Roudier, F.2    Seifert, M.3    Bérard, C.4    Magniette, M.-L.M.5    Ashtiyani, R.K.6
  • 13
    • 84901847787 scopus 로고    scopus 로고
    • Natural variation of histone modification and its impact on gene expression in the rat genome
    • 1:CAS:528:DC%2BC2cXhtVSgurfJ 4032858 24793478
    • Rintisch C, Heinig M, Bauerfeind A, Schafer S, Mieth C, Patone G, et al. Natural variation of histone modification and its impact on gene expression in the rat genome. Genome Res. 2014;24:942-53.
    • (2014) Genome Res , vol.24 , pp. 942-953
    • Rintisch, C.1    Heinig, M.2    Bauerfeind, A.3    Schafer, S.4    Mieth, C.5    Patone, G.6
  • 14
    • 34249725088 scopus 로고    scopus 로고
    • Allele-specific chromatin immunoprecipitation studies show genetic influence on chromatin state in human genome
    • 1868950 17511522
    • Kadota M, Yang HH, Hu N, Wang C, Hu Y, Taylor PR, et al. Allele-specific chromatin immunoprecipitation studies show genetic influence on chromatin state in human genome. PLoS Genet. 2007;3:e81.
    • (2007) PLoS Genet , vol.3 , pp. e81
    • Kadota, M.1    Yang, H.H.2    Hu, N.3    Wang, C.4    Hu, Y.5    Taylor, P.R.6
  • 15
    • 84866952772 scopus 로고    scopus 로고
    • Genetic modifiers of chromatin acetylation antagonize the reprogramming of epi-polymorphisms
    • 1:CAS:528:DC%2BC38XhsVaktrrN 3447955 23028365
    • Abraham AL, Nagarajan M, Veyrieras JB, Bottin H, Steinmetz LM, Yvert G. Genetic modifiers of chromatin acetylation antagonize the reprogramming of epi-polymorphisms. PLoS Genet. 2012;8:e1002958.
    • (2012) PLoS Genet , vol.8
    • Abraham, A.L.1    Nagarajan, M.2    Veyrieras, J.B.3    Bottin, H.4    Steinmetz, L.M.5    Yvert, G.6
  • 17
    • 23944462969 scopus 로고    scopus 로고
    • Genome-wide map of nucleosome acetylation and methylation in yeast
    • 1:CAS:528:DC%2BD2MXpvVKntLc%3D 16122420
    • Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI, et al. Genome-wide map of nucleosome acetylation and methylation in yeast. Cell. 2005;122:517-27.
    • (2005) Cell , vol.122 , pp. 517-527
    • Pokholok, D.K.1    Harbison, C.T.2    Levine, S.3    Cole, M.4    Hannett, N.M.5    Lee, T.I.6
  • 19
    • 34547913442 scopus 로고    scopus 로고
    • Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
    • 1:CAS:528:DC%2BD2sXptVejtLw%3D 1933262 17652520
    • Wei W, McCusker JH, Hyman RW, Jones T, Ning Y, Cao Z, et al. Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. Proc Natl Acad Sci USA. 2007;104:12825-30.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 12825-12830
    • Wei, W.1    McCusker, J.H.2    Hyman, R.W.3    Jones, T.4    Ning, Y.5    Cao, Z.6
  • 20
    • 62649089109 scopus 로고    scopus 로고
    • Population genomics of domestic and wild yeasts
    • 1:CAS:528:DC%2BD1MXhvFKisrc%3D 2659681 19212322
    • Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, et al. Population genomics of domestic and wild yeasts. Nature. 2009;458:337-41.
    • (2009) Nature , vol.458 , pp. 337-341
    • Liti, G.1    Carter, D.M.2    Moses, A.M.3    Warringer, J.4    Parts, L.5    James, S.A.6
  • 21
    • 0037177625 scopus 로고    scopus 로고
    • Genetic dissection of transcriptional regulation in budding yeast
    • 1:CAS:528:DC%2BD38XjtlOnt70%3D 11923494
    • Brem RB, Yvert G, Clinton R, Kruglyak L. Genetic dissection of transcriptional regulation in budding yeast. Science. 2002;296:752-5.
    • (2002) Science , vol.296 , pp. 752-755
    • Brem, R.B.1    Yvert, G.2    Clinton, R.3    Kruglyak, L.4
  • 22
    • 33748288159 scopus 로고    scopus 로고
    • Population genomic analysis of outcrossing and recombination in yeast
    • 1:CAS:528:DC%2BD28XovVWjtr8%3D 16892060
    • Ruderfer DM, Pratt SC, Seidel HS, Kruglyak L. Population genomic analysis of outcrossing and recombination in yeast. Nat Genet. 2006;38:1077-81.
    • (2006) Nat Genet , vol.38 , pp. 1077-1081
    • Ruderfer, D.M.1    Pratt, S.C.2    Seidel, H.S.3    Kruglyak, L.4
  • 24
    • 51549087123 scopus 로고    scopus 로고
    • Probing nucleosome function: A highly versatile library of synthetic histone H3 and H4 mutants
    • 1:CAS:528:DC%2BD1cXht1Sns7rL 2701395 18805098
    • Dai J, Hyland EM, Yuan DS, Huang H, Bader JS, Boeke JD. Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants. Cell. 2008;134:1066-78.
    • (2008) Cell , vol.134 , pp. 1066-1078
    • Dai, J.1    Hyland, E.M.2    Yuan, D.S.3    Huang, H.4    Bader, J.S.5    Boeke, J.D.6
  • 26
    • 84907833207 scopus 로고    scopus 로고
    • Histone methylation has dynamics distinct from those of histone acetylation in cell cycle reentry from quiescence
    • 1:CAS:528:DC%2BC2cXhvVCqtbbF 4386454 25154414
    • Mews P, Zee BM, Liu S, Donahue G, Garcia BA, Berger SL. Histone methylation has dynamics distinct from those of histone acetylation in cell cycle reentry from quiescence. Mol Cell Biol. 2014;34:3968-80.
    • (2014) Mol Cell Biol , vol.34 , pp. 3968-3980
    • Mews, P.1    Zee, B.M.2    Liu, S.3    Donahue, G.4    Garcia, B.A.5    Berger, S.L.6
  • 27
    • 0029835806 scopus 로고    scopus 로고
    • Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines
    • 1:CAS:528:DyaK28Xlsl2ksLY%3D 8805705
    • Kuo MH, Brownell JE, Sobel RE, Ranalli TA, Cook RG, Edmondson DG, et al. Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines. Nature. 1996;383:269-72.
    • (1996) Nature , vol.383 , pp. 269-272
    • Kuo, M.H.1    Brownell, J.E.2    Sobel, R.E.3    Ranalli, T.A.4    Cook, R.G.5    Edmondson, D.G.6
  • 29
    • 84912049472 scopus 로고    scopus 로고
    • Comprehensive analysis of interacting proteins and genome-wide location studies of the Sas3-dependent NuA3 histone acetyltransferase complex
    • 4248121 25473596
    • Vicente-Muñoz S, Romero P, Magraner-Pardo L, Martinez-Jimenez CP, Tordera V, Pamblanco M. Comprehensive analysis of interacting proteins and genome-wide location studies of the Sas3-dependent NuA3 histone acetyltransferase complex. FEBS Open Bio. 2014;4:996-1006.
    • (2014) FEBS Open Bio , vol.4 , pp. 996-1006
    • Vicente-Muñoz, S.1    Romero, P.2    Magraner-Pardo, L.3    Martinez-Jimenez, C.P.4    Tordera, V.5    Pamblanco, M.6
  • 30
    • 0037123767 scopus 로고    scopus 로고
    • Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases
    • 1:CAS:528:DC%2BD38XjvFKgtL0%3D 12086601
    • Robyr D, Suka Y, Xenarios I, Kurdistani SK, Wang A, Suka N, et al. Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases. Cell. 2002;109:437-46.
    • (2002) Cell , vol.109 , pp. 437-446
    • Robyr, D.1    Suka, Y.2    Xenarios, I.3    Kurdistani, S.K.4    Wang, A.5    Suka, N.6
  • 31
    • 66149127693 scopus 로고    scopus 로고
    • The Gcn5 bromodomain of the SAGA complex facilitates cooperative and cross-tail acetylation of nucleosomes
    • 1:CAS:528:DC%2BD1MXjs1ymsLs%3D 2666593 19218239
    • Li S, Shogren-Knaak MA. The Gcn5 bromodomain of the SAGA complex facilitates cooperative and cross-tail acetylation of nucleosomes. J Biol Chem. 2009;284:9411-7.
    • (2009) J Biol Chem , vol.284 , pp. 9411-9417
    • Li, S.1    Shogren-Knaak, M.A.2
  • 33
    • 43249129715 scopus 로고    scopus 로고
    • Gene-environment interaction in yeast gene expression
    • 2292755 18416601
    • Smith EN, Kruglyak L. Gene-environment interaction in yeast gene expression. PLoS Biol. 2008;6:e83.
    • (2008) PLoS Biol , vol.6 , pp. e83
    • Smith, E.N.1    Kruglyak, L.2
  • 34
    • 84903955203 scopus 로고    scopus 로고
    • Divergence and selectivity of expression-coupled histone modifications in budding yeasts
    • 4090005 25007273
    • Mosesson Y, Voichek Y, Barkai N. Divergence and selectivity of expression-coupled histone modifications in budding yeasts. PLoS One. 2014;9:e101538.
    • (2014) PLoS One , vol.9
    • Mosesson, Y.1    Voichek, Y.2    Barkai, N.3
  • 35
    • 78751659330 scopus 로고    scopus 로고
    • Nascent transcript sequencing visualizes transcription at nucleotide resolution
    • 1:CAS:528:DC%2BC3MXnvVOisg%3D%3D 21248844
    • Churchman LS, Weissman JS. Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature. 2011;469:368-73.
    • (2011) Nature , vol.469 , pp. 368-373
    • Churchman, L.S.1    Weissman, J.S.2
  • 36
    • 84859017070 scopus 로고    scopus 로고
    • Measurement of genome-wide RNA synthesis and decay rates with dynamic transcriptome analysis (DTA)
    • 1:CAS:528:DC%2BC38Xks1Sjur4%3D 22285829
    • Schwalb B, Schulz D, Sun M, Zacher B, Dümcke S, Martin DE, et al. Measurement of genome-wide RNA synthesis and decay rates with dynamic transcriptome analysis (DTA). Bioinformatics. 2012;28:884-5.
    • (2012) Bioinformatics , vol.28 , pp. 884-885
    • Schwalb, B.1    Schulz, D.2    Sun, M.3    Zacher, B.4    Dümcke, S.5    Martin, D.E.6
  • 37
    • 8644257491 scopus 로고    scopus 로고
    • Rvb1p/Rvb2p recruit Arp5p and assemble a functional Ino80 chromatin remodeling complex
    • 15525518
    • Jónsson ZO, Jha S, Wohlschlegel JA, Dutta A. Rvb1p/Rvb2p recruit Arp5p and assemble a functional Ino80 chromatin remodeling complex. Mol Cell. 2004;16:465-77.
    • (2004) Mol Cell , vol.16 , pp. 465-477
    • Jónsson, Z.O.1    Jha, S.2    Wohlschlegel, J.A.3    Dutta, A.4
  • 38
    • 3042619287 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae multidrug transporter Qdr2p (Yil121wp): Localization and function as a quinidine resistance determinant
    • 1:CAS:528:DC%2BD2cXlsFWmtL4%3D 434225 15215105
    • Vargas RC, Tenreiro S, Teixeira MC, Fernandes AR, Sa-Correia I. Saccharomyces cerevisiae multidrug transporter Qdr2p (Yil121wp): localization and function as a quinidine resistance determinant. Antimicrob Agents Chemother. 2004;48:2531-7.
    • (2004) Antimicrob Agents Chemother , vol.48 , pp. 2531-2537
    • Vargas, R.C.1    Tenreiro, S.2    Teixeira, M.C.3    Fernandes, A.R.4    Sa-Correia, I.5
  • 39
    • 0343006848 scopus 로고    scopus 로고
    • Crystal structure of the worm NitFhit Rosetta stone protein reveals a Nit tetramer binding two Fhit dimers
    • 1:CAS:528:DC%2BD3cXlsFCmtLc%3D 10959838
    • Pace HC, Hodawadekar SC, Draganescu A, Huang J, Bieganowski P, Pekarsky Y, et al. Crystal structure of the worm NitFhit Rosetta stone protein reveals a Nit tetramer binding two Fhit dimers. Curr Biol. 2000;10:907-17.
    • (2000) Curr Biol , vol.10 , pp. 907-917
    • Pace, H.C.1    Hodawadekar, S.C.2    Draganescu, A.3    Huang, J.4    Bieganowski, P.5    Pekarsky, Y.6
  • 41
    • 34250785284 scopus 로고    scopus 로고
    • Genetic properties influencing the evolvability of gene expression
    • 1:CAS:528:DC%2BD2sXnt1SjtLY%3D 17525304
    • Landry CR, Lemos B, Rifkin SA, Dickinson WJ, Hartl DL. Genetic properties influencing the evolvability of gene expression. Science. 2007;317:118-21.
    • (2007) Science , vol.317 , pp. 118-121
    • Landry, C.R.1    Lemos, B.2    Rifkin, S.A.3    Dickinson, W.J.4    Hartl, D.L.5
  • 42
    • 33745583768 scopus 로고    scopus 로고
    • A genetic signature of interspecies variations in gene expression
    • 1:CAS:528:DC%2BD28XmtFyru7w%3D 16783381
    • Tirosh I, Weinberger A, Carmi M, Barkai N. A genetic signature of interspecies variations in gene expression. Nat Genet. 2006;38:830-4.
    • (2006) Nat Genet , vol.38 , pp. 830-834
    • Tirosh, I.1    Weinberger, A.2    Carmi, M.3    Barkai, N.4
  • 43
    • 78650930357 scopus 로고    scopus 로고
    • Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast
    • 1:CAS:528:DC%2BC3MXhs1Gmt7c%3D 3049410 21206491
    • Miller C, Schwalb B, Maier K, Schulz D, Dumcke S, Zacher B, et al. Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Mol Syst Biol. 2011;7:458.
    • (2011) Mol Syst Biol , vol.7 , pp. 458
    • Miller, C.1    Schwalb, B.2    Maier, K.3    Schulz, D.4    Dumcke, S.5    Zacher, B.6
  • 45
    • 79958077283 scopus 로고    scopus 로고
    • Nucleosome positioning in Saccharomyces cerevisiae
    • 1:CAS:528:DC%2BC3MXpslOitrg%3D 3122627 21646431
    • Jansen A, Verstrepen KJ. Nucleosome positioning in Saccharomyces cerevisiae. Microbiol Mol Biol Rev. 2011;75:301-20.
    • (2011) Microbiol Mol Biol Rev , vol.75 , pp. 301-320
    • Jansen, A.1    Verstrepen, K.J.2
  • 47
    • 84867371116 scopus 로고    scopus 로고
    • A functional evolutionary approach to identify determinants of nucleosome positioning: A unifying model for establishing the genome-wide pattern
    • 1:CAS:528:DC%2BC38XhtF2gu7rN 3472102 22885008
    • Hughes AL, Jin Y, Rando OJ, Struhl K. A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern. Mol Cell. 2012;48:5-15.
    • (2012) Mol Cell , vol.48 , pp. 5-15
    • Hughes, A.L.1    Jin, Y.2    Rando, O.J.3    Struhl, K.4
  • 48
    • 84862643713 scopus 로고    scopus 로고
    • Genome-wide nucleosome specificity and directionality of chromatin remodelers
    • 1:CAS:528:DC%2BC38XptVKrsLY%3D 3397793 22726434
    • Yen K, Vinayachandran V, Batta K, Koerber RT, Pugh BF. Genome-wide nucleosome specificity and directionality of chromatin remodelers. Cell. 2012;149:1461-73.
    • (2012) Cell , vol.149 , pp. 1461-1473
    • Yen, K.1    Vinayachandran, V.2    Batta, K.3    Koerber, R.T.4    Pugh, B.F.5
  • 49
    • 48949094754 scopus 로고    scopus 로고
    • Local regulatory variation in Saccharomyces cerevisiae
    • 1189075 16121257
    • Ronald J, Brem RB, Whittle J, Kruglyak L. Local regulatory variation in Saccharomyces cerevisiae. PLoS Genet. 2005;1:e25.
    • (2005) PLoS Genet , vol.1 , pp. e25
    • Ronald, J.1    Brem, R.B.2    Whittle, J.3    Kruglyak, L.4
  • 50
    • 84911438978 scopus 로고    scopus 로고
    • NuA4 links methylation of histone H3 lysines 4 and 36 to acetylation of histones H4 and H3
    • 1:CAS:528:DC%2BC2cXhvFKkt7zE 25301943
    • Ginsburg DS, Anlembom TE, Wang J, Patel SR, Li B, Hinnebusch AG. NuA4 links methylation of histone H3 lysines 4 and 36 to acetylation of histones H4 and H3. J Biol Chem. 2014;289:32656-70.
    • (2014) J Biol Chem , vol.289 , pp. 32656-32670
    • Ginsburg, D.S.1    Anlembom, T.E.2    Wang, J.3    Patel, S.R.4    Li, B.5    Hinnebusch, A.G.6
  • 51
    • 84868585917 scopus 로고    scopus 로고
    • Histone H3K4 demethylation is negatively regulated by histone H3 acetylation in Saccharomyces cerevisiae
    • 1:CAS:528:DC%2BC38XhslymtbnN 3494965 23091032
    • Maltby VE, Martin BJE, Brind'Amour J, Chruscicki AT, McBurney KL, Schulze JM, et al. Histone H3K4 demethylation is negatively regulated by histone H3 acetylation in Saccharomyces cerevisiae. Proc Natl Acad Sci. 2012;109:18505-10.
    • (2012) Proc Natl Acad Sci , vol.109 , pp. 18505-18510
    • Maltby, V.E.1    Martin, B.J.E.2    Brind'Amour, J.3    Chruscicki, A.T.4    McBurney, K.L.5    Schulze, J.M.6
  • 52
    • 0032579440 scopus 로고    scopus 로고
    • Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications
    • 1:CAS:528:DyaK1cXptVyjsA%3D%3D 9483801
    • Brachmann CB, Davies A, Cost GJ, Caputo E, Li J, Hieter P, et al. Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast. 1998;14:115-32.
    • (1998) Yeast , vol.14 , pp. 115-132
    • Brachmann, C.B.1    Davies, A.2    Cost, G.J.3    Caputo, E.4    Li, J.5    Hieter, P.6
  • 53
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • 1:CAS:528:DC%2BC38Xjt1Oqt7c%3D 3322381 22388286
    • Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9:357-9.
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 55
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • 1:CAS:528:DC%2BC3cXivFGkurc%3D 2832824 20110278
    • Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010;26:841-2.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 57
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • 1:CAS:528:DC%2BC3cXhsVahs7bI 3218662 20979621
    • Anders S, Huber W. Differential expression analysis for sequence count data. Genome Biol. 2010;11:R106.
    • (2010) Genome Biol , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 58
    • 33847303495 scopus 로고    scopus 로고
    • Genetic complexity and quantitative trait loci mapping of yeast morphological traits
    • 1802830 17319748
    • Nogami S, Ohya Y, Yvert G. Genetic complexity and quantitative trait loci mapping of yeast morphological traits. PLoS Genet. 2007;3:e31.
    • (2007) PLoS Genet , vol.3 , pp. e31
    • Nogami, S.1    Ohya, Y.2    Yvert, G.3
  • 59
    • 74949110964 scopus 로고    scopus 로고
    • High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
    • 1:CAS:528:DC%2BC3cXls1Olsw%3D%3D 2798834 19846608
    • Weiner A, Hughes A, Yassour M, Rando OJ, Friedman N. High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Res. 2010;20:90-100.
    • (2010) Genome Res , vol.20 , pp. 90-100
    • Weiner, A.1    Hughes, A.2    Yassour, M.3    Rando, O.J.4    Friedman, N.5
  • 60
    • 43749088127 scopus 로고    scopus 로고
    • Two strategies for gene regulation by promoter nucleosomes
    • 1:CAS:528:DC%2BD1cXotlKmsbc%3D 2493397 18448704
    • Tirosh I, Barkai N. Two strategies for gene regulation by promoter nucleosomes. Genome Res. 2008;18:1084-91.
    • (2008) Genome Res , vol.18 , pp. 1084-1091
    • Tirosh, I.1    Barkai, N.2


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