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Volumn 289, Issue 47, 2014, Pages 32656-32670

NuA4 links methylation of histone H3 lysines 4 and 36 to acetylation of histones H4 and H3

Author keywords

[No Author keywords available]

Indexed keywords

ALKYLATION; AMINO ACIDS; CODES (SYMBOLS); METHYLATION; PROTEINS; TRANSCRIPTION;

EID: 84911438978     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M114.585588     Document Type: Article
Times cited : (29)

References (54)
  • 1
    • 0033567954 scopus 로고    scopus 로고
    • NuA4, an essential transcription adaptor/histone H4 acetyltransferase comple containing Esa1p and the ATM-related cofactor Tra1p
    • Allard, S., Utley, R. T., Savard, J., Clarke, A., Grant, P., Brandl, C. J., Pillus, L., Workman, J. L., and Côté, J. (1999) NuA4, an essential transcription adaptor/histone H4 acetyltransferase comple containing Esa1p and the ATM-related cofactor Tra1p. EMBO J. 18, 5108-5119
    • (1999) EMBO J. , vol.18 , pp. 5108-5119
    • Allard, S.1    Utley, R.T.2    Savard, J.3    Clarke, A.4    Grant, P.5    Brandl, C.J.6    Pillus, L.7    Workman, J.L.8    Côté, J.9
  • 2
    • 1942439646 scopus 로고    scopus 로고
    • The highly conserved and multifunctional NuA4 HAT complex
    • Doyon, Y., and Côté, J. (2004) The highly conserved and multifunctional NuA4 HAT complex. Curr. Opin. Genet. Dev. 14, 147-154
    • (2004) Curr. Opin. Genet. Dev. , vol.14 , pp. 147-154
    • Doyon, Y.1    Côté, J.2
  • 3
    • 41149115039 scopus 로고    scopus 로고
    • Eaf1 is the platform for NuA4 molecular assembly that evolutionarily links chromatin acetylation to ATP-dependent exchange of histone H2A variants
    • Auger, A., Galarneau, L., Altaf, M., Nourani, A., Doyon, Y., Utley, R. T., Cronier, D., Allard, S., and Côté, J. (2008) Eaf1 is the platform for NuA4 molecular assembly that evolutionarily links chromatin acetylation to ATP-dependent exchange of histone H2A variants. Mol. Cell. Biol. 28, 2257-2270
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 2257-2270
    • Auger, A.1    Galarneau, L.2    Altaf, M.3    Nourani, A.4    Doyon, Y.5    Utley, R.T.6    Cronier, D.7    Allard, S.8    Côté, J.9
  • 4
    • 71949105211 scopus 로고    scopus 로고
    • NuA4 lysine acetyltransferase Esa1 is targeted to coding regions and stimulates transcription elongation with Gcn5
    • Ginsburg, D. S., Govind, C. K., and Hinnebusch, A. G. (2009) NuA4 lysine acetyltransferase Esa1 is targeted to coding regions and stimulates transcription elongation with Gcn5. Mol. Cell. Biol. 29, 6473-6487
    • (2009) Mol. Cell. Biol. , vol.29 , pp. 6473-6487
    • Ginsburg, D.S.1    Govind, C.K.2    Hinnebusch, A.G.3
  • 5
    • 33845968873 scopus 로고    scopus 로고
    • Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions
    • Govind, C. K., Zhang, F., Qiu, H., Hofmeyer, K., and Hinnebusch, A. G. (2007) Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions. Mol. Cell 25, 31-42
    • (2007) Mol. Cell , vol.25 , pp. 31-42
    • Govind, C.K.1    Zhang, F.2    Qiu, H.3    Hofmeyer, K.4    Hinnebusch, A.G.5
  • 6
    • 12344284012 scopus 로고    scopus 로고
    • Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes
    • Brower-Toland, B., Wacker, D. A., Fulbright, R. M., Lis, J. T., Kraus, W. L., and Wang, M. D. (2005) Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes. J. Mol. Biol. 346, 135-146
    • (2005) J. Mol. Biol. , vol.346 , pp. 135-146
    • Brower-Toland, B.1    Wacker, D.A.2    Fulbright, R.M.3    Lis, J.T.4    Kraus, W.L.5    Wang, M.D.6
  • 7
    • 34547858913 scopus 로고    scopus 로고
    • Structure and acetyl-lysine recognition of the bromodomain
    • Mujtaba, S., Zeng, L., and Zhou, M. M. (2007) Structure and acetyl-lysine recognition of the bromodomain. Oncogene 26, 5521-5527
    • (2007) Oncogene , vol.26 , pp. 5521-5527
    • Mujtaba, S.1    Zeng, L.2    Zhou, M.M.3
  • 8
    • 0035893240 scopus 로고    scopus 로고
    • Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae
    • Briggs, S. D., Bryk, M., Strahl, B. D., Cheung, W. L., Davie, J. K., Dent, S. Y., Winston, F., and Allis, C. D. (2001) Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae. Genes Dev. 15, 3286-3295
    • (2001) Genes Dev. , vol.15 , pp. 3286-3295
    • Briggs, S.D.1    Bryk, M.2    Strahl, B.D.3    Cheung, W.L.4    Davie, J.K.5    Dent, S.Y.6    Winston, F.7    Allis, C.D.8
  • 11
    • 33847070442 scopus 로고    scopus 로고
    • The role of chromatin during transcription
    • Li, B., Carey, M., and Workman, J. L. (2007) The role of chromatin during transcription. Cell 128, 707-719
    • (2007) Cell , vol.128 , pp. 707-719
    • Li, B.1    Carey, M.2    Workman, J.L.3
  • 12
    • 64249111489 scopus 로고    scopus 로고
    • Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5′ transcribed regions
    • Kim, T., and Buratowski, S. (2009) Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5′ transcribed regions. Cell 137, 259-272
    • (2009) Cell , vol.137 , pp. 259-272
    • Kim, T.1    Buratowski, S.2
  • 13
    • 65549095078 scopus 로고    scopus 로고
    • Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription
    • Li, B., Jackson, J., Simon, M. D., Fleharty, B., Gogol, M., Seidel, C., Workman, J. L., and Shilatifard, A. (2009) Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription. J. Biol. Chem. 284, 7970-7976
    • (2009) J. Biol. Chem. , vol.284 , pp. 7970-7976
    • Li, B.1    Jackson, J.2    Simon, M.D.3    Fleharty, B.4    Gogol, M.5    Seidel, C.6    Workman, J.L.7    Shilatifard, A.8
  • 14
    • 29144468972 scopus 로고    scopus 로고
    • Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation
    • Joshi, A. A., and Struhl, K. (2005) Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation. Mol. Cell 20, 971-978
    • (2005) Mol. Cell , vol.20 , pp. 971-978
    • Joshi, A.A.1    Struhl, K.2
  • 16
    • 34249099730 scopus 로고    scopus 로고
    • Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin
    • Li, B., Gogol, M., Carey, M., Lee, D., Seidel, C., and Workman, J. L. (2007) Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin. Science 316, 1050-1054
    • (2007) Science , vol.316 , pp. 1050-1054
    • Li, B.1    Gogol, M.2    Carey, M.3    Lee, D.4    Seidel, C.5    Workman, J.L.6
  • 17
    • 67649550089 scopus 로고    scopus 로고
    • H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation
    • Pinskaya, M., Gourvennec, S., and Morillon, A. (2009) H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation. EMBO J. 28, 1697-1707
    • (2009) EMBO J. , vol.28 , pp. 1697-1707
    • Pinskaya, M.1    Gourvennec, S.2    Morillon, A.3
  • 20
    • 33847082117 scopus 로고    scopus 로고
    • Selective recognition of acetylated histones by bromodomains in transcriptional co-activators
    • Hassan, A. H., Awad, S., Al-Natour, Z., Othman, S., Mustafa, F., and Rizvi, T. A. (2007) Selective recognition of acetylated histones by bromodomains in transcriptional co-activators. Biochem. J. 402, 125-133
    • (2007) Biochem. J. , vol.402 , pp. 125-133
    • Hassan, A.H.1    Awad, S.2    Al-Natour, Z.3    Othman, S.4    Mustafa, F.5    Rizvi, T.A.6
  • 21
    • 0036847620 scopus 로고    scopus 로고
    • Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes
    • Hassan, A. H., Prochasson, P., Neely, K. E., Galasinski, S. C., Chandy, M., Carrozza, M. J., and Workman, J. L. (2002) Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes. Cell 111, 369-379
    • (2002) Cell , vol.111 , pp. 369-379
    • Hassan, A.H.1    Prochasson, P.2    Neely, K.E.3    Galasinski, S.C.4    Chandy, M.5    Carrozza, M.J.6    Workman, J.L.7
  • 24
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • Longtine, M. S., McKenzie, A., 3rd, Demarini, D. J., Shah, N. G., Wach, A., Brachat, A., Philippsen, P., and Pringle, J. R. (1998) Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14, 953-961
    • (1998) Yeast , vol.14 , pp. 953-961
    • Longtine, M.S.1    McKenzie, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5    Brachat, A.6    Philippsen, P.7    Pringle, J.R.8
  • 25
    • 0042195847 scopus 로고    scopus 로고
    • New "marker swap" plasmids for converting selectable markers on budding yeast gene disruptions and plasmids
    • Voth, W. P., Jiang, Y. W., and Stillman, D. J. (2003) New "marker swap" plasmids for converting selectable markers on budding yeast gene disruptions and plasmids. Yeast 20, 985-993
    • (2003) Yeast , vol.20 , pp. 985-993
    • Voth, W.P.1    Jiang, Y.W.2    Stillman, D.J.3
  • 27
    • 0034841844 scopus 로고    scopus 로고
    • The tandem affinity purification (TAP) method: A general procedure of protein complex purification
    • Puig, O., Caspary, F., Rigaut, G., Rutz, B., Bouveret, E., Bragado-Nilsson, E., Wilm, M., and Séraphin, B. (2001) The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods 24, 218-229
    • (2001) Methods , vol.24 , pp. 218-229
    • Puig, O.1    Caspary, F.2    Rigaut, G.3    Rutz, B.4    Bouveret, E.5    Bragado-Nilsson, E.6    Wilm, M.7    Séraphin, B.8
  • 28
    • 3242728442 scopus 로고    scopus 로고
    • A triad of subunits from the Gal11/tail domain of Srb mediator is an in vivo target of transcriptional activator Gcn4p
    • Zhang, F., Sumibcay, L., Hinnebusch, A. G., and Swanson, M. J. (2004) A triad of subunits from the Gal11/tail domain of Srb mediator is an in vivo target of transcriptional activator Gcn4p. Mol. Cell. Biol. 24, 6871-6886
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 6871-6886
    • Zhang, F.1    Sumibcay, L.2    Hinnebusch, A.G.3    Swanson, M.J.4
  • 29
    • 0041935939 scopus 로고    scopus 로고
    • U. S. National Institutes of Health, Bethesda, MD
    • Rasband, W. S. (1997-2014) ImageJ, U. S. National Institutes of Health, Bethesda, MD
    • (1997) ImageJ
    • Rasband, W.S.1
  • 30
    • 0020479804 scopus 로고
    • Import of proteins into mitochondria: Yeast cells grown in the presence of carbonyl cyanide m-chlorophenylhydrazone accumulate massive amounts of some mitochondrial precursor polypeptides
    • Reid, G. A., and Schatz, G. (1982) Import of proteins into mitochondria: yeast cells grown in the presence of carbonyl cyanide m-chlorophenylhydrazone accumulate massive amounts of some mitochondrial precursor polypeptides. J. Biol. Chem. 257, 13056-13061
    • (1982) J. Biol. Chem. , vol.257 , pp. 13056-13061
    • Reid, G.A.1    Schatz, G.2
  • 31
    • 62549104640 scopus 로고    scopus 로고
    • Phosphorylation of the Pol IICTDby KIN28 enhances BUR1/BUR2 recruitment and Ser2CTDphosphorylation near promoters
    • Qiu, H., Hu, C., and Hinnebusch, A. G. (2009) Phosphorylation of the Pol IICTDby KIN28 enhances BUR1/BUR2 recruitment and Ser2CTDphosphorylation near promoters. Mol. Cell 33, 752-762
    • (2009) Mol. Cell , vol.33 , pp. 752-762
    • Qiu, H.1    Hu, C.2    Hinnebusch, A.G.3
  • 32
    • 34547102488 scopus 로고    scopus 로고
    • Two Saccharomyces cerevisiae JmjC domain proteins demethylate histone H3 Lys-36 in transcribed regions to promote elongation
    • Kim, T., and Buratowski, S. (2007) Two Saccharomyces cerevisiae JmjC domain proteins demethylate histone H3 Lys-36 in transcribed regions to promote elongation. J. Biol. Chem. 282, 20827-20835
    • (2007) J. Biol. Chem. , vol.282 , pp. 20827-20835
    • Kim, T.1    Buratowski, S.2
  • 33
    • 41149083933 scopus 로고    scopus 로고
    • Functional dissection of the NuA4 histone acetyltransferase reveals its role as a genetic hub and that Eaf1 is essential for complex integrity
    • Mitchell, L., Lambert, J. P., Gerdes, M., Al-Madhoun, A. S., Skerjanc, I. S., Figeys, D., and Baetz, K. (2008) Functional dissection of the NuA4 histone acetyltransferase reveals its role as a genetic hub and that Eaf1 is essential for complex integrity. Mol. Cell. Biol. 28, 2244-2256
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 2244-2256
    • Mitchell, L.1    Lambert, J.P.2    Gerdes, M.3    Al-Madhoun, A.S.4    Skerjanc, I.S.5    Figeys, D.6    Baetz, K.7
  • 34
    • 4744350877 scopus 로고    scopus 로고
    • The essential ATP-binding cassette protein RLI1 functions in translation by promoting preinitiation complex assembly
    • Dong, J., Lai, R., Nielsen, K., Fekete, C. A., Qiu, H., and Hinnebusch, A. G. (2004) The essential ATP-binding cassette protein RLI1 functions in translation by promoting preinitiation complex assembly. J. Biol. Chem. 279, 42157-42168
    • (2004) J. Biol. Chem. , vol.279 , pp. 42157-42168
    • Dong, J.1    Lai, R.2    Nielsen, K.3    Fekete, C.A.4    Qiu, H.5    Hinnebusch, A.G.6
  • 35
    • 66149127693 scopus 로고    scopus 로고
    • The Gcn5 bromodomain of the SAGA complex facilitates cooperative and cross-tail acetylation of nucleosomes
    • Li, S., and Shogren-Knaak, M. A. (2009) The Gcn5 bromodomain of the SAGA complex facilitates cooperative and cross-tail acetylation of nucleosomes. J. Biol. Chem. 284, 9411-9417
    • (2009) J. Biol. Chem. , vol.284 , pp. 9411-9417
    • Li, S.1    Shogren-Knaak, M.A.2
  • 36
    • 0034780285 scopus 로고    scopus 로고
    • Role of an ING1 growth regulator in transcriptional activation and targeted histone acetylation by the NuA4 complex
    • Nourani, A., Doyon, Y., Utley, R. T., Allard, S., Lane, W. S., and Côté, J. (2001) Role of an ING1 growth regulator in transcriptional activation and targeted histone acetylation by the NuA4 complex. Mol. Cell. Biol. 21, 7629-7640
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 7629-7640
    • Nourani, A.1    Doyon, Y.2    Utley, R.T.3    Allard, S.4    Lane, W.S.5    Côté, J.6
  • 37
    • 0032965152 scopus 로고    scopus 로고
    • Esa1p is an essential histone acetyltransferase required for cell cycle progression
    • Clarke, A. S., Lowell, J. E., Jacobson, S. J., and Pillus, L. (1999) Esa1p is an essential histone acetyltransferase required for cell cycle progression. Mol. Cell. Biol. 19, 2515-2526
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 2515-2526
    • Clarke, A.S.1    Lowell, J.E.2    Jacobson, S.J.3    Pillus, L.4
  • 39
    • 3242680774 scopus 로고    scopus 로고
    • Molecular architecture of the S. cerevisiae SAGA complex
    • Wu, P. Y., Ruhlmann, C., Winston, F., and Schultz, P. (2004) Molecular architecture of the S. cerevisiae SAGA complex. Mol. Cell 15, 199-208
    • (2004) Mol. Cell , vol.15 , pp. 199-208
    • Wu, P.Y.1    Ruhlmann, C.2    Winston, F.3    Schultz, P.4
  • 41
    • 0035933521 scopus 로고    scopus 로고
    • Recruitment of HAT complexes by direct activator interactions with the AATM-related Tra1 subunit
    • Brown, C. E., Howe, L., Sousa, K., Alley, S. C., Carrozza, M. J., Tan, S., and Workman, J. L. (2001) Recruitment of HAT complexes by direct activator interactions with the AATM-related Tra1 subunit. Science 292, 2333-2337
    • (2001) Science , vol.292 , pp. 2333-2337
    • Brown, C.E.1    Howe, L.2    Sousa, K.3    Alley, S.C.4    Carrozza, M.J.5    Tan, S.6    Workman, J.L.7
  • 42
    • 0034973590 scopus 로고    scopus 로고
    • Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast
    • Natarajan, K., Meyer, M. R., Jackson, B. M., Slade, D., Roberts, C., Hinnebusch, A. G., and Marton, M. J. (2001) Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast. Mol. Cell. Biol. 21, 4347-4368
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 4347-4368
    • Natarajan, K.1    Meyer, M.R.2    Jackson, B.M.3    Slade, D.4    Roberts, C.5    Hinnebusch, A.G.6    Marton, M.J.7
  • 44
    • 0037248593 scopus 로고    scopus 로고
    • A conserved RING finger protein required for histone H2B monoubiquitination and cell size control
    • Hwang, W. W., Venkatasubrahmanyam, S., Ianculescu, A. G., Tong, A., Boone, C., and Madhani, H. D. (2003) A conserved RING finger protein required for histone H2B monoubiquitination and cell size control. Mol. Cell 11, 261-266
    • (2003) Mol. Cell , vol.11 , pp. 261-266
    • Hwang, W.W.1    Venkatasubrahmanyam, S.2    Ianculescu, A.G.3    Tong, A.4    Boone, C.5    Madhani, H.D.6
  • 46
    • 77955497472 scopus 로고    scopus 로고
    • Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes
    • Govind, C. K., Qiu, H., Ginsburg, D. S., Ruan, C., Hofmeyer, K., Hu, C., Swaminathan, V., Workman, J. L., Li, B., and Hinnebusch, A. G. (2010) Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes. Mol. Cell 39, 234-246
    • (2010) Mol. Cell , vol.39 , pp. 234-246
    • Govind, C.K.1    Qiu, H.2    Ginsburg, D.S.3    Ruan, C.4    Hofmeyer, K.5    Hu, C.6    Swaminathan, V.7    Workman, J.L.8    Li, B.9    Hinnebusch, A.G.10
  • 50
    • 27144458417 scopus 로고    scopus 로고
    • Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide
    • Rao, B., Shibata, Y., Strahl, B. D., and Lieb, J. D. (2005) Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide. Mol. Cell. Biol. 25, 9447-9459
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 9447-9459
    • Rao, B.1    Shibata, Y.2    Strahl, B.D.3    Lieb, J.D.4
  • 51
    • 47049102833 scopus 로고    scopus 로고
    • Different genetic functions for the Rpd3(L) and Rpd3(S) complexes suggest competition between NuA4 and Rpd3(S)
    • Biswas, D., Takahata, S., and Stillman, D. J. (2008) Different genetic functions for the Rpd3(L) and Rpd3(S) complexes suggest competition between NuA4 and Rpd3(S). Mol. Cell. Biol. 28, 4445-4458
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 4445-4458
    • Biswas, D.1    Takahata, S.2    Stillman, D.J.3
  • 52
    • 84872398729 scopus 로고    scopus 로고
    • Transcription-associated histone modifications and cryptic transcription
    • Smolle, M., and Workman, J. L. (2013) Transcription-associated histone modifications and cryptic transcription. Biochim. Biophys. Acta 1829, 84-97
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 84-97
    • Smolle, M.1    Workman, J.L.2
  • 53
    • 51549087123 scopus 로고    scopus 로고
    • Probing nucleosome function: A highly versatile library of synthetic histone H3 and H4 mutants
    • Dai, J., Hyland, E. M., Yuan, D. S., Huang, H., Bader, J. S., and Boeke, J. D. (2008) Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants. Cell 134, 1066-1078
    • (2008) Cell , vol.134 , pp. 1066-1078
    • Dai, J.1    Hyland, E.M.2    Yuan, D.S.3    Huang, H.4    Bader, J.S.5    Boeke, J.D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.