Identification of a multi-reassortant G12P[9] rotavirus with novel VP1, VP2, VP3 and NSP2 genotypes in a child with acute gastroenteritis

Infection, Genetics and Evolution

Volumn 35, Issue , 2015, Pages 34-37

  De Grazia, Simona ^a   Giammanco, Giovanni M ^a   Dóró, Renáta ^b   Bonura, Floriana ^a   Marton, Szilvia ^b   Cascio, Antonio ^c   Martella, Vito ^d   Bányai, Krisztián ^b  

^a UNIVERSITY OF PALERMO   (Italy)

^b INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

^c UNIVERSITY OF MESSINA   (Italy)

^d UNIVERSITY OF BARI   (Italy)

Author keywords

Full genome sequencing; G12P 9 ; Genotyping; Human rotavirus; Interspecies transmission; Reassortment

Indexed keywords

NONSTRUCTURAL PROTEIN 2; PROTEIN VP1; PROTEIN VP2; PROTEIN VP3; VIRUS PROTEIN;

ACUTE GASTROENTERITIS; ARTICLE; CASE REPORT; CHILD; GENE SEQUENCE; GENETIC REASSORTMENT; GENOTYPE; HUMAN; ITALY; NONHUMAN; NSP2 GENE; NUCLEOTIDE SEQUENCE; PRESCHOOL CHILD; PRIORITY JOURNAL; ROTAVIRUS; SEQUENCE ANALYSIS; VIRUS IDENTIFICATION; VIRUS RECOMBINATION; VIRUS STRAIN; VP1 GENE; VP2 GENE; VP3 GENE; CLASSIFICATION; GASTROENTERITIS; GENETICS; PHYLOGENY; ROTAVIRUS INFECTION; VIROLOGY; VIRUS GENOME;

ANIMALIA; HUMAN ROTAVIRUS A; ROTAVIRUS;

CHILD, PRESCHOOL; GASTROENTERITIS; GENOME, VIRAL; HUMANS; PHYLOGENY; REASSORTANT VIRUSES; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, RNA; VIRAL STRUCTURAL PROTEINS;

EID: 84938282073     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2015.07.023     Document Type: Article

References (15)

1. De Grazia S., Bonura F., Colomba C., Cascio A., Di Bernardo F., Collura A., Terranova D.M., Martella V., Giammanco G.M. Data mining from a 27-years rotavirus surveillance in Palermo, Italy. Infect. Genet. Evol. 2014, 28:377-384.
2. Doro R., Mihalov-Kovacs E., Marton S., Laszlo B., Deak J., Jakab F., Juhasz A., Kisfali P., Martella V., Melegh B., Molnar P., Santha I., Schneider F., Banyai K. Large-scale whole genome sequencing identifies country-wide spread of an emerging G9P[8] rotavirus strain in Hungary, 2012. Infect. Genet. Evol. 2014, 28:495-512.
3. Estes M.K., Greenberg H.B. Rotaviruses 2013, Lippincott Williams and Wilkins, Philadelphia. 6th ed.
4. Gentsch J.R., Glass R.I., Woods P., Gouvea V., Gorziglia M., Flores J., Das B.K., Bhan M.K. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J. Clin. Microbiol. 1992, 30:1365-1373.
5. Gomez M.M., Resque H.R., Volotao Ede M., Rose T.L., da Silva M.F., Heylen E., Zeller M., Matthijnssens J., Leite J.P. Distinct evolutionary origins of G12P[8] and G12P[9] group A rotavirus strains circulating in Brazil. Infect. Genet. Evol. 2014, 28:385-388.
6. Gouvea V., Glass R.I., Woods P., Taniguchi K., Clark H.F., Forrester B., Fang Z.Y. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J. Clin. Microbiol. 1990, 28:276-282.
7. Guo D., Liu J., Lu Y., Sun Y., Yuan D., Jiang Q., Lin H., Li C., Si C., Qu L. Full genomic analysis of rabbit rotavirus G3P[14] strain N5 in China: identification of a novel VP6 genotype. Infect. Genet. Evol. 2012, 12:1567-1576.
8. Iturriza-Gomara M., Kang G., Gray J. Rotavirus genotyping: keeping up with an evolving population of human rotaviruses. J. Clin. Virol. 2004, 31:259-265.
9. Komoto S., Wandera Apondi E., Shah M., Odoyo E., Nyangao J., Tomita M., Wakuda M., Maeno Y., Shirato H., Tsuji T., Ichinose Y., Taniguchi K. Whole genomic analysis of human G12P[6] and G12P[8] rotavirus strains that have emerged in Kenya: identification of porcine-like NSP4 genes. Infect. Genet. Evol. 2014, 27:277-293.
10. Martel-Paradis O., Laurin M.A., Martella V., Sohal J.S., L'Homme Y. Full-length genome analysis of G2, G9 and G11 porcine group A rotaviruses. Vet. Microbiol. 2013, 162:94-102.
11. Matthijnssens J., Ciarlet M., Rahman M., Attoui H., Banyai K., Estes M.K., Gentsch J.R., Iturriza-Gomara M., Kirkwood C.D., Martella V., Mertens P.P., Nakagomi O., Patton J.T., Ruggeri F.M., Saif L.J., Santos N., Steyer A., Taniguchi K., Desselberger U., Van Ranst M. Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch. Virol. 2008, 153:1621-1629.
12. Papp H., Borzak R., Farkas S., Kisfali P., Lengyel G., Molnar P., Melegh B., Matthijnssens J., Jakab F., Martella V., Banyai K. Zoonotic transmission of reassortant porcine G4P[6] rotaviruses in Hungarian pediatric patients identified sporadically over a 15 year period. Infect. Genet. Evol. 2013, 19:71-80.
13. Rahman M., Matthijnssens J., Yang X., Delbeke T., Arijs I., Taniguchi K., Iturriza-Gomara M., Iftekharuddin N., Azim T., Van Ranst M. Evolutionary history and global spread of the emerging g12 human rotaviruses. J. Virol. 2007, 81:2382-2390.
14. Sharma S., Paul V.K., Bhan M.K., Ray P. Genomic characterization of nontypeable rotaviruses and detection of a rare G8 strain in Delhi, India. J. Clin. Microbiol. 2009, 47:3998-4005.
15. Wakuda M., Nagashima S., Kobayashi N., Pongsuwanna Y., Taniguchi K. Serologic and genomic characterization of a G12 human rotavirus in Thailand. J. Clin. Microbiol. 2003, 41:5764-5769.