메뉴 건너뛰기




Volumn 27, Issue , 2014, Pages 277-293

Whole genomic analysis of human G12P[6] and G12P[8] rotavirus strains that have emerged in Kenya: Identification of porcine-like NSP4 genes

Author keywords

Africa; G12 strains; Group A rotavirus; Reassortment; Whole genomic analysis

Indexed keywords

NONSTRUCTURAL PROTEIN 1; NONSTRUCTURAL PROTEIN 2; NONSTRUCTURAL PROTEIN 3; NONSTRUCTURAL PROTEIN 5; PROTEIN VP1; PROTEIN VP2; PROTEIN VP4; PROTEIN VP6; PROTEIN VP7; ROTAVIRUS NONSTRUCTURAL PROTEIN 4; GLYCOPROTEIN; NS28 PROTEIN, ROTAVIRUS; TOXIN; VIRUS PROTEIN;

EID: 84907307985     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2014.08.002     Document Type: Article
Times cited : (35)

References (52)
  • 3
    • 84895419555 scopus 로고    scopus 로고
    • Molecular epidemiology of contemporary G2P[4] human rotaviruses co-circulating in a single US community: footprints of a globally transitioning genotype
    • Dennis A.F., McDonald S.M., Payne D.C., Mijatovic-Rustempasic S., Esona M.D., Edwards K.M., Chappell J.D., Patton J.T. Molecular epidemiology of contemporary G2P[4] human rotaviruses co-circulating in a single US community: footprints of a globally transitioning genotype. J. Virol. 2014, 88:3789-3801.
    • (2014) J. Virol. , vol.88 , pp. 3789-3801
    • Dennis, A.F.1    McDonald, S.M.2    Payne, D.C.3    Mijatovic-Rustempasic, S.4    Esona, M.D.5    Edwards, K.M.6    Chappell, J.D.7    Patton, J.T.8
  • 4
    • 84883671677 scopus 로고    scopus 로고
    • Rotavirus genotypes associated with childhood severe acute diarrhoea in southern Ghana: a cross-sectional study
    • Enweronu-Laryea C.C., Sagoe K.W., Damanka S., Lartey B., Armah G.E. Rotavirus genotypes associated with childhood severe acute diarrhoea in southern Ghana: a cross-sectional study. Virol. J. 2013, 10:287.
    • (2013) Virol. J. , vol.10 , pp. 287
    • Enweronu-Laryea, C.C.1    Sagoe, K.W.2    Damanka, S.3    Lartey, B.4    Armah, G.E.5
  • 5
    • 84973511965 scopus 로고    scopus 로고
    • Rotaviruses
    • Lippincott Williams & Wilkins, Philadelphia, P.M. Knipe, D.M. Howley (Eds.)
    • Estes M.K., Greenberg H.B. Rotaviruses. Fields Virology 2013, 1347-1401. Lippincott Williams & Wilkins, Philadelphia. sixth ed. P.M. Knipe, D.M. Howley (Eds.).
    • (2013) Fields Virology , pp. 1347-1401
    • Estes, M.K.1    Greenberg, H.B.2
  • 6
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 7
    • 33745156265 scopus 로고    scopus 로고
    • Molecular characterization of a porcine group A rotavirus strain with G12 genotype specificity
    • Ghosh S., Varghese V., Samajdar S., Bhattacharya S.K., Kobayashi N., Naik T.N. Molecular characterization of a porcine group A rotavirus strain with G12 genotype specificity. Arch. Virol. 2006, 151:1329-1344.
    • (2006) Arch. Virol. , vol.151 , pp. 1329-1344
    • Ghosh, S.1    Varghese, V.2    Samajdar, S.3    Bhattacharya, S.K.4    Kobayashi, N.5    Naik, T.N.6
  • 9
    • 80053475959 scopus 로고    scopus 로고
    • Whole-genomic analysis of rotavirus strains: current status and future prospects
    • Ghosh S., Kobayashi N. Whole-genomic analysis of rotavirus strains: current status and future prospects. Future Microbiol. 2011, 6:1049-1065.
    • (2011) Future Microbiol. , vol.6 , pp. 1049-1065
    • Ghosh, S.1    Kobayashi, N.2
  • 10
    • 80052750696 scopus 로고    scopus 로고
    • Whole genome analyses of African G2, G8, G9, and G12 rotavirus strains using sequence-independent amplification and 454® pyrosequencing
    • Jere K.C., Mlera L., O'Neill H.G., Potgieter A.C., Page N.A., Seheri M.L., van Dijk A.A. Whole genome analyses of African G2, G8, G9, and G12 rotavirus strains using sequence-independent amplification and 454® pyrosequencing. J. Med. Virol. 2011, 83:2018-2042.
    • (2011) J. Med. Virol. , vol.83 , pp. 2018-2042
    • Jere, K.C.1    Mlera, L.2    O'Neill, H.G.3    Potgieter, A.C.4    Page, N.A.5    Seheri, M.L.6    van Dijk, A.A.7
  • 13
    • 33645210825 scopus 로고    scopus 로고
    • Reverse genetics system for introduction of site-specific mutations into the double-stranded RNA genome of infectious rotavirus
    • Komoto S., Sasaki J., Taniguchi K. Reverse genetics system for introduction of site-specific mutations into the double-stranded RNA genome of infectious rotavirus. Proc. Natl. Sci. U.S.A. 2006, 103:4646-4651.
    • (2006) Proc. Natl. Sci. U.S.A. , vol.103 , pp. 4646-4651
    • Komoto, S.1    Sasaki, J.2    Taniguchi, K.3
  • 14
    • 84879162658 scopus 로고    scopus 로고
    • Whole genomic analysis of a porcine-like human G5P[6] rotavirus strain isolated from a child with diarrhoea and encephalopathy in Japan
    • Komoto S., Maeno Y., Tomita M., Matsuoka T., Ohfu M., Yodoshi T., Akeda H., Taniguchi K. Whole genomic analysis of a porcine-like human G5P[6] rotavirus strain isolated from a child with diarrhoea and encephalopathy in Japan. J. Gen. Virol. 2013, 94:1568-1575.
    • (2013) J. Gen. Virol. , vol.94 , pp. 1568-1575
    • Komoto, S.1    Maeno, Y.2    Tomita, M.3    Matsuoka, T.4    Ohfu, M.5    Yodoshi, T.6    Akeda, H.7    Taniguchi, K.8
  • 16
    • 72449136215 scopus 로고    scopus 로고
    • RotaC: a web-based tool for the complete genome classification of group A rotaviruses
    • Maes P., Matthijnssens J., Rahman M., Van Ranst M. RotaC: a web-based tool for the complete genome classification of group A rotaviruses. BMC Microbiol. 2009, 9:238.
    • (2009) BMC Microbiol. , vol.9 , pp. 238
    • Maes, P.1    Matthijnssens, J.2    Rahman, M.3    Van Ranst, M.4
  • 22
    • 77957234590 scopus 로고    scopus 로고
    • Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread
    • Matthijnssens J., Heylen E., Zeller M., Rahman M., Lemey P., Van Ranst M. Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread. Mol. Biol. Evol. 2010, 27:2431-2436.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2431-2436
    • Matthijnssens, J.1    Heylen, E.2    Zeller, M.3    Rahman, M.4    Lemey, P.5    Van Ranst, M.6
  • 25
    • 84865117926 scopus 로고    scopus 로고
    • Genotype constellation and evolution of group A rotaviruses infecting humans
    • Matthijnssens J., Van Ranst M. Genotype constellation and evolution of group A rotaviruses infecting humans. Curr. Opin. Virol. 2012, 2:426-433.
    • (2012) Curr. Opin. Virol. , vol.2 , pp. 426-433
    • Matthijnssens, J.1    Van Ranst, M.2
  • 33
    • 84864125891 scopus 로고    scopus 로고
    • Molecular epidemiology of rotavirus and norovirus in Ile-Ife, Nigeria: high prevalence of G12P[8] rotavirus strains and detection of a rare norovirus genotype
    • Oluwatoyin Japhet M., Adeyemi Adesina O., Famurewa O., Svensson L., Nordgren J. Molecular epidemiology of rotavirus and norovirus in Ile-Ife, Nigeria: high prevalence of G12P[8] rotavirus strains and detection of a rare norovirus genotype. J. Med. Virol. 2012, 84:1489-1496.
    • (2012) J. Med. Virol. , vol.84 , pp. 1489-1496
    • Oluwatoyin Japhet, M.1    Adeyemi Adesina, O.2    Famurewa, O.3    Svensson, L.4    Nordgren, J.5
  • 35
    • 58149237468 scopus 로고    scopus 로고
    • The detection and molecular characterization of human G12 genotypes in South Africa
    • Page N.A., de Beer M.C., Seheri L.M., Dewar J.B., Steele A.D. The detection and molecular characterization of human G12 genotypes in South Africa. J. Med. Virol. 2009, 81:106-113.
    • (2009) J. Med. Virol. , vol.81 , pp. 106-113
    • Page, N.A.1    de Beer, M.C.2    Seheri, L.M.3    Dewar, J.B.4    Steele, A.D.5
  • 36
    • 55949125844 scopus 로고    scopus 로고
    • Phylogenetic analysis of rotaviruses with genotypes G1, G2, G9 and G12 in Bangladesh: evidence for a close relationship between rotaviruses from children and adults
    • Paul S.K., Kobayashi N., Nagashima S., Ishino M., Watanabe S., Alam M.M., Ahmed M.U., Hossain M.A., Naik T.N. Phylogenetic analysis of rotaviruses with genotypes G1, G2, G9 and G12 in Bangladesh: evidence for a close relationship between rotaviruses from children and adults. Arch. Virol. 2008, 153:1999-2012.
    • (2008) Arch. Virol. , vol.153 , pp. 1999-2012
    • Paul, S.K.1    Kobayashi, N.2    Nagashima, S.3    Ishino, M.4    Watanabe, S.5    Alam, M.M.6    Ahmed, M.U.7    Hossain, M.A.8    Naik, T.N.9
  • 41
    • 53849123618 scopus 로고    scopus 로고
    • Human group A rotavirus P[8] Hun9-like and rare OP354-like strains are circulating among diarrhoeic children in Eastern India
    • Samajdar S., Ghosh S., Dutta D., Chawla-Sarkar M., Kobayashi N., Naik T.N. Human group A rotavirus P[8] Hun9-like and rare OP354-like strains are circulating among diarrhoeic children in Eastern India. Arch. Virol. 2008, 153:1933-1936.
    • (2008) Arch. Virol. , vol.153 , pp. 1933-1936
    • Samajdar, S.1    Ghosh, S.2    Dutta, D.3    Chawla-Sarkar, M.4    Kobayashi, N.5    Naik, T.N.6
  • 42
    • 11244302672 scopus 로고    scopus 로고
    • Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine
    • Santos N., Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev. Med. Virol. 2005, 15:29-56.
    • (2005) Rev. Med. Virol. , vol.15 , pp. 29-56
    • Santos, N.1    Hoshino, Y.2
  • 44
    • 3042741767 scopus 로고    scopus 로고
    • Characterization of human rotavirus strains with G12 and P[9] detected in Japan
    • Shinozaki K., Okada M., Nagashima S., Kaiho I., Taniguchi K. Characterization of human rotavirus strains with G12 and P[9] detected in Japan. J. Med. Virol. 2004, 73:612-616.
    • (2004) J. Med. Virol. , vol.73 , pp. 612-616
    • Shinozaki, K.1    Okada, M.2    Nagashima, S.3    Kaiho, I.4    Taniguchi, K.5
  • 45
    • 84860348386 scopus 로고    scopus 로고
    • Increased frequency of rotavirus G3P[8] and G12P[8] in Argentina during 2008-2009: whole-genome characterization of emerging G12P[8] strains
    • Argentinean National Rotavirus Surveillance Network
    • Stupka J.A., Degiuseppe J.I., Parra G.I. Increased frequency of rotavirus G3P[8] and G12P[8] in Argentina during 2008-2009: whole-genome characterization of emerging G12P[8] strains. J. Clin. Virol. 2012, 54:162-167. Argentinean National Rotavirus Surveillance Network.
    • (2012) J. Clin. Virol. , vol.54 , pp. 162-167
    • Stupka, J.A.1    Degiuseppe, J.I.2    Parra, G.I.3
  • 47
    • 0025007083 scopus 로고
    • Nucleotide sequence of VP4 and VP7 genes of human rotaviruses with subgroup I specificity and long RNA pattern: implication for new G serotype specificity
    • Taniguchi K., Urasawa T., Kobayashi N., Gorziglia M., Urasawa S. Nucleotide sequence of VP4 and VP7 genes of human rotaviruses with subgroup I specificity and long RNA pattern: implication for new G serotype specificity. J. Virol. 1990, 64:5640-5644.
    • (1990) J. Virol. , vol.64 , pp. 5640-5644
    • Taniguchi, K.1    Urasawa, T.2    Kobayashi, N.3    Gorziglia, M.4    Urasawa, S.5
  • 48
    • 84856217709 scopus 로고    scopus 로고
    • 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis
    • WHO-coordinated Global Rotavirus Surveillance Network
    • Tate J.E., Burton A.H., Boschi-Pinto C., Steele A.D., Dugue J., Parashar U.D. 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis. Lancet Infect. Dis. 2012, 12:136-141. WHO-coordinated Global Rotavirus Surveillance Network.
    • (2012) Lancet Infect. Dis. , vol.12 , pp. 136-141
    • Tate, J.E.1    Burton, A.H.2    Boschi-Pinto, C.3    Steele, A.D.4    Dugue, J.5    Parashar, U.D.6
  • 49
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 50
    • 84871296795 scopus 로고    scopus 로고
    • Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses
    • Trojnar E., Sachsenröder J., Twardziok S., Reetz J., Otto P.H., Johne R. Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses. J. Gen. Virol. 2013, 94:136-142.
    • (2013) J. Gen. Virol. , vol.94 , pp. 136-142
    • Trojnar, E.1    Sachsenröder, J.2    Twardziok, S.3    Reetz, J.4    Otto, P.H.5    Johne, R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.