-
1
-
-
79959887638
-
A diversity of assembly mechanisms of a generic amyloid fold
-
T. Eichner & S. E. Radford A diversity of assembly mechanisms of a generic amyloid fold. Mol Cell 43, 8 (2011).
-
(2011)
Mol Cell
, vol.43
, pp. 8
-
-
Eichner, T.1
Radford, S.E.2
-
2
-
-
84901355639
-
The amyloid state and its association with protein misfolding diseases
-
T. P. Knowles, M. Vendruscolo & C. M. Dobson The amyloid state and its association with protein misfolding diseases. Nat Rev Mol Cell Biol 15, 384 (2014).
-
(2014)
Nat Rev Mol Cell Biol
, vol.15
, pp. 384
-
-
Knowles, T.P.1
Vendruscolo, M.2
Dobson, C.M.3
-
3
-
-
84883688262
-
Self-propagation of pathogenic protein aggregates in neurodegenerative diseases
-
M. Jucker & L. C. Walker Self-propagation of pathogenic protein aggregates in neurodegenerative diseases. Nature 501, 45 (2013).
-
(2013)
Nature
, vol.501
, pp. 45
-
-
Jucker, M.1
Walker, L.C.2
-
5
-
-
77957782470
-
Biology of amyloid: Structure, function, and regulation
-
J. Greenwald & R. Riek Biology of amyloid: structure, function, and regulation. Structure 18, 1244 (2010).
-
(2010)
Structure
, vol.18
, pp. 1244
-
-
Greenwald, J.1
Riek, R.2
-
6
-
-
84906267564
-
Functional amyloid: Widespread in Nature, diverse in purpose
-
C. L. Pham, A. H. Kwan & M. Sunde Functional amyloid: widespread in Nature, diverse in purpose. Essays in biochemistry 56, 207 (2014).
-
(2014)
Essays in Biochemistry
, vol.56
, pp. 207
-
-
Pham, C.L.1
Kwan, A.H.2
Sunde, M.3
-
7
-
-
84905671661
-
Fold modulating function: Bacterial toxins to functional amyloids
-
A. K. Syed & B. R. Boles Fold modulating function: bacterial toxins to functional amyloids. Frontiers in microbiology 5, 401 (2014).
-
(2014)
Frontiers in Microbiology
, vol.5
, pp. 401
-
-
Syed, A.K.1
Boles, B.R.2
-
8
-
-
84878136082
-
Blessings in disguise: Biological benefits of prion-like mechanisms
-
G. A. Newby & S. Lindquist Blessings in disguise: biological benefits of prion-like mechanisms. Trends Cell Biol 23, 251 (2013).
-
(2013)
Trends Cell Biol
, vol.23
, pp. 251
-
-
Newby, G.A.1
Lindquist, S.2
-
9
-
-
84864240409
-
The RIP1/RIP3 necrosome forms a functional amyloid signaling complex required for programmed necrosis
-
J. Li et al. The RIP1/RIP3 necrosome forms a functional amyloid signaling complex required for programmed necrosis. Cell 150, 339 (2012).
-
(2012)
Cell
, vol.150
, pp. 339
-
-
Li, J.1
-
10
-
-
84924045139
-
Signal Transduction by a Fungal NOD-Like Receptor Based on Propagation of a Prion Amyloid Fold
-
A. Daskalov et al. Signal Transduction by a Fungal NOD-Like Receptor Based on Propagation of a Prion Amyloid Fold. PLoS Biol 13, e1002059 (2015).
-
(2015)
PLoS Biol
, vol.13
-
-
Daskalov, A.1
-
11
-
-
84859506059
-
Genomic clustering and homology between HET-S and the NWD2 STAND protein in various fungal genomes
-
A. Daskalov, M. Paoletti, F. Ness & S. J. Saupe Genomic clustering and homology between HET-S and the NWD2 STAND protein in various fungal genomes. Plos One 7, e34854 (2012).
-
(2012)
Plos One
, vol.7
-
-
Daskalov, A.1
Paoletti, M.2
Ness, F.3
Saupe, S.J.4
-
12
-
-
84871682946
-
The mechanism of toxicity in HET-S/HET-s prion incompatibility
-
C. Seuring et al. The mechanism of toxicity in HET-S/HET-s prion incompatibility. PLoS Biol 10, e1001451 (2012).
-
(2012)
PLoS Biol
, vol.10
-
-
Seuring, C.1
-
13
-
-
77955504368
-
The mechanism of prion inhibition by HET-S
-
Jun 25
-
J. Greenwald et al. The mechanism of prion inhibition by HET-S. Mol Cell 38, 889 (Jun 25, 2010).
-
(2010)
Mol Cell
, vol.38
, pp. 889
-
-
Greenwald, J.1
-
14
-
-
0038219626
-
Domain organization and structure-function relationship of the HET-s prion protein of Podospora anserina
-
A. Balguerie et al. Domain organization and structure-function relationship of the HET-s prion protein of Podospora anserina. Embo J 22, 2071 (2003).
-
(2003)
Embo J
, vol.22
, pp. 2071
-
-
Balguerie, A.1
-
15
-
-
20444458341
-
Correlation of structural elements and infectivity of the HET-s prion
-
C. Ritter et al. Correlation of structural elements and infectivity of the HET-s prion. Nature 435, 844 (2005).
-
(2005)
Nature
, vol.435
, pp. 844
-
-
Ritter, C.1
-
16
-
-
77957324146
-
Atomic-resolution three-dimensional structure of HET-s(218-289) amyloid fibrils by solid-state NMR spectroscopy
-
H. Van Melckebeke et al. Atomic-resolution three-dimensional structure of HET-s(218-289) amyloid fibrils by solid-state NMR spectroscopy. J Am Chem Soc 132, 13765 (2010).
-
(2010)
J Am Chem Soc
, vol.132
, pp. 13765
-
-
Van Melckebeke, H.1
-
17
-
-
40849120669
-
Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core
-
C. Wasmer et al. Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core. Science 319, 1523 (2008).
-
(2008)
Science
, vol.319
, pp. 1523
-
-
Wasmer, C.1
-
18
-
-
83355166788
-
Two structurally similar fungal prions efficiently cross-seed in vivo but form distinct polymers when coexpressed
-
L. Benkemoun et al. Two structurally similar fungal prions efficiently cross-seed in vivo but form distinct polymers when coexpressed. Mol Microbiol 82, 1392 (2011).
-
(2011)
Mol Microbiol
, vol.82
, pp. 1392
-
-
Benkemoun, L.1
-
19
-
-
77956782713
-
Structural similarity between the prion domain of HET-s and a homologue can explain amyloid cross-seeding in spite of limited sequence identity
-
Sep 17
-
C. Wasmer et al. Structural similarity between the prion domain of HET-s and a homologue can explain amyloid cross-seeding in spite of limited sequence identity. J Mol Biol 402, 311 (Sep 17, 2010).
-
(2010)
J Mol Biol
, vol.402
, pp. 311
-
-
Wasmer, C.1
-
20
-
-
84856790302
-
Localization of HET-S to the cell periphery, not to [Het-s] aggregates, is associated with [Het-s]-HET-S toxicity
-
V. Mathur, C. Seuring, R. Riek, S. J. Saupe & S. W. Liebman Localization of HET-S to the cell periphery, not to [Het-s] aggregates, is associated with [Het-s]-HET-S toxicity. Mol Cell Biol 32, 139 (2012).
-
(2012)
Mol Cell Biol
, vol.32
, pp. 139
-
-
Mathur, V.1
Seuring, C.2
Riek, R.3
Saupe, S.J.4
Liebman, S.W.5
-
21
-
-
84896381627
-
Prion-like polymerization underlies signal transduction in antiviral immune defense and inflammasome activation
-
X. Cai et al. Prion-like Polymerization Underlies Signal Transduction in Antiviral Immune Defense and Inflammasome Activation. Cell 156, 1207 (2014).
-
(2014)
Cell
, vol.156
, pp. 1207
-
-
Cai, X.1
-
22
-
-
84876221513
-
Higher-order assemblies in a new paradigm of signal transduction
-
H. Wu Higher-order assemblies in a new paradigm of signal transduction. Cell 153, 287 (2013).
-
(2013)
Cell
, vol.153
, pp. 287
-
-
Wu, H.1
-
23
-
-
84938131681
-
Evolutionary link between metazoan RHIM motif and prion-forming domain of fungal heterokaryon incompatibility factor HET-s/HET-s
-
A. V. Kajava, K. Klopffleisch, S. Chen & K. Hofmann Evolutionary link between metazoan RHIM motif and prion-forming domain of fungal heterokaryon incompatibility factor HET-s/HET-s. Scientific reports 4, 7436 (2014).
-
(2014)
Scientific Reports
, vol.4
, pp. 7436
-
-
Kajava, A.V.1
Klopffleisch, K.2
Chen, S.3
Hofmann, K.4
-
24
-
-
84924047678
-
Diversity and variability of NOD-like receptors in fungi
-
W. Dyrka et al. Diversity and Variability of NOD-Like Receptors in Fungi. Genome biology and evolution 6, 3137 (2014).
-
(2014)
Genome Biology and Evolution
, vol.6
, pp. 3137
-
-
Dyrka, W.1
-
25
-
-
84903464851
-
Contribution of specific residues of the beta-solenoid fold to HET-s prion function, amyloid structure and stability
-
A. Daskalov et al. Contribution of specific residues of the beta-solenoid fold to HET-s prion function, amyloid structure and stability. PLoS Pathog 10, e1004158 (2014).
-
(2014)
PLoS Pathog
, vol.10
-
-
Daskalov, A.1
-
26
-
-
84898047961
-
Fungal prion HET-s as a model for structural complexity and self-propagation in prions
-
W. Wan & G. Stubbs Fungal prion HET-s as a model for structural complexity and self-propagation in prions. Proc Natl Acad Sci USA 111, 5201 (2014).
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 5201
-
-
Wan, W.1
Stubbs, G.2
-
27
-
-
84884603324
-
Assessing the utility of coevolution-based residue-residue contact predictions in a sequence-and structure-rich era
-
H. Kamisetty, S. Ovchinnikov & D. Baker Assessing the utility of coevolution-based residue-residue contact predictions in a sequence-and structure-rich era. Proc Natl Acad Sci USA 110, 15674 (2013).
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 15674
-
-
Kamisetty, H.1
Ovchinnikov, S.2
Baker, D.3
-
28
-
-
84921038759
-
Structure of a functional amyloid protein subunit computed using sequence variation
-
P. Tian et al. Structure of a functional amyloid protein subunit computed using sequence variation. J Am Chem Soc 137, 22 (2015).
-
(2015)
J Am Chem Soc
, vol.137
, pp. 22
-
-
Tian, P.1
-
29
-
-
34247842740
-
The death domain superfamily in intracellular signaling of apoptosis and inflammation
-
H. H. Park et al. The death domain superfamily in intracellular signaling of apoptosis and inflammation. Annual review of immunology 25, 561 (2007).
-
(2007)
Annual Review of Immunology
, vol.25
, pp. 561
-
-
Park, H.H.1
-
30
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
S. F. Altschul et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389 (1997).
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389
-
-
Altschul, S.F.1
-
31
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
T. L. Bailey et al. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37, W202 (2009).
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W202
-
-
Bailey, T.L.1
-
32
-
-
0000122573
-
PHYLIP-Phylogeny Inference Package (Version 3.2)
-
J. Felsenstein PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics 5, 164 (1989).
-
(1989)
Cladistics
, vol.5
, pp. 164
-
-
Felsenstein, J.1
-
34
-
-
0034201441
-
EMBOSS: The european molecular biology open software suite
-
P. Rice, I. Longden & A. Bleasby EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16, 276 (2000).
-
(2000)
Trends Genet
, vol.16
, pp. 276
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
35
-
-
0023661088
-
A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons
-
M. S. Waterman & M. Eggert A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons. J Mol Biol 197, 723 (1987).
-
(1987)
J Mol Biol
, vol.197
, pp. 723
-
-
Waterman, M.S.1
Eggert, M.2
-
36
-
-
44949272730
-
A time-efficient, linear-space local similarity algorithm
-
X. Huang & M. Miller A time-efficient, linear-space local similarity algorithm. Adv. Appl. Math 12, 373 (1991).
-
(1991)
Adv. Appl. Math
, vol.12
, pp. 373
-
-
Huang, X.1
Miller, M.2
-
37
-
-
0019887799
-
Identification of common molecular subsequences
-
T. F. Smith & M. S. Waterman Identification of common molecular subsequences. J Mol Biol 147, 195 (1981).
-
(1981)
J Mol Biol
, vol.147
, pp. 195
-
-
Smith, T.F.1
Waterman, M.S.2
-
38
-
-
84902603261
-
ForceAtlas2, a continuous graph layout algorithm for handy network visualization designed for the Gephi software
-
M. Jacomy, T. Venturini, S. Heymann & M. Bastian ForceAtlas2, a continuous graph layout algorithm for handy network visualization designed for the Gephi software. PLoS One 9, e98679 (2014).
-
(2014)
PLoS One
, vol.9
-
-
Jacomy, M.1
Venturini, T.2
Heymann, S.3
Bastian, M.4
|