A pipeline for the systematic identification of non-redundant full-ORF cDNAs for polymorphic and evolutionary divergent genomes: Application to the ascidian Ciona intestinalis

Developmental Biology

Volumn 404, Issue 2, 2015, Pages 149-163

  Gilchrist, Michael J ^b,e   Sobral, Daniel ^a,f   Khoueiry, Pierre ^a,g   Daian, Fabrice ^a   Laporte, Batiste ^a   Patrushev, Ilya ^e   Matsumoto, Jun ^c   Dewar, Ken ^c   Hastings, Kenneth E M ^c   Satou, Yutaka ^d   Lemaire, Patrick ^a,h   Rothbächer, Ute ^a,i  

^a CNRS   (France)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c MCGILL UNIVERSITY   (Canada)

^d KYOTO UNIVERSITY   (Japan)

^e THE FRANCIS CRICK INSTITUTE   (United Kingdom)

^f INSTITUTO GULBENKIAN DE CIÊNCIA   (Portugal)

^g EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^h Centre National de la Recherche Scientifique   (France)

ⁱ UNIVERSITY OF INNSBRUCK   (Austria)

Author keywords

Ascidians; Full ORF; Functional genomics; Human disease; Prediction pipeline; Transcriptomics

Indexed keywords

COMPLEMENTARY DNA;

ARTICLE; ASCIDIACEA; CIONA INTESTINALIS; EVOLUTION; EXON; FUNCTIONAL GENOMICS; GENE FUNCTION; GENE REGULATORY NETWORK; GENETIC POLYMORPHISM; GENOME; MOLECULAR CLONING; NONHUMAN; OPEN READING FRAME; PARALOGY; PRIORITY JOURNAL; SISTER GROUP; ALGORITHM; ANIMAL; DNA SEQUENCE; GENE EXPRESSION PROFILING; GENETIC PREDISPOSITION; GENETICS; HUMAN; MOLECULAR EVOLUTION; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; SEQUENCE ALIGNMENT;

ASCIDIA; ASCIDIACEA; CIONA; CIONA INTESTINALIS; INVERTEBRATA; VERTEBRATA;

ALGORITHMS; ANIMALS; BASE SEQUENCE; BIOLOGICAL EVOLUTION; CIONA INTESTINALIS; EVOLUTION, MOLECULAR; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORKS; GENETIC PREDISPOSITION TO DISEASE; HUMANS; MULTIGENE FAMILY; OPEN READING FRAMES; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

EID: 84937736575     PISSN: 00121606     EISSN: 1095564X     Source Type: Journal    
DOI: 10.1016/j.ydbio.2015.05.014     Document Type: Article

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