-
1
-
-
46749151652
-
Adaptation, migration or extirpation: Climate change outcomes for tree populations
-
Aitken SN, Yeaman S, Holliday JA, Wang T, Curtis-McLane S, (2008) Adaptation, migration or extirpation: climate change outcomes for tree populations. Evolutionary Applications, 1, 95-111.
-
(2008)
Evolutionary Applications
, vol.1
, pp. 95-111
-
-
Aitken, S.N.1
Yeaman, S.2
Holliday, J.A.3
Wang, T.4
Curtis-McLane, S.5
-
2
-
-
79959345137
-
Evolutionary genetics of plant adaptation
-
Anderson JT, Willis JH, Mitchell-Olds T, (2011) Evolutionary genetics of plant adaptation. Trends in Genetics, 27, 258-266.
-
(2011)
Trends in Genetics
, vol.27
, pp. 258-266
-
-
Anderson, J.T.1
Willis, J.H.2
Mitchell-Olds, T.3
-
3
-
-
80054718602
-
Spontaneous epigenetic variation in the Arabidopsis thalianaI methylome
-
Becker C, Hagmann J, Müller J, et al,. (2011) Spontaneous epigenetic variation in the Arabidopsis thalianaI methylome. Nature, 480, 245-249.
-
(2011)
Nature
, vol.480
, pp. 245-249
-
-
Becker, C.1
Hagmann, J.2
Müller, J.3
-
4
-
-
6344279807
-
Nucleotide diversity and linkage disequilibrium in loblolly pine
-
Brown GR, Gill GP, Kuntz RJ, Langley CH, Neale DB, (2004) Nucleotide diversity and linkage disequilibrium in loblolly pine. Proceedings of the National Academy of Sciences, 101, 15255-15260.
-
(2004)
Proceedings of the National Academy of Sciences
, vol.101
, pp. 15255-15260
-
-
Brown, G.R.1
Gill, G.P.2
Kuntz, R.J.3
Langley, C.H.4
Neale, D.B.5
-
5
-
-
84884299558
-
Stacks: Building and genotyping loci de novo from short-read sequences
-
Catchen JM, Amores A, Hohenlohe P, Cresko W, Postlethwait JH, (2011) Stacks: building and genotyping loci de novo from short-read sequences. G3: Genes, Genomes, Genetics, 1, 171-182.
-
(2011)
G3: Genes, Genomes, Genetics
, vol.1
, pp. 171-182
-
-
Catchen, J.M.1
Amores, A.2
Hohenlohe, P.3
Cresko, W.4
Postlethwait, J.H.5
-
6
-
-
84864353941
-
Transcriptome and methylome interactions in rice hybrids
-
Chodavarapu RK, Feng S, Ding B, et al,. (2012) Transcriptome and methylome interactions in rice hybrids. Proceedings of the National Academy of Sciences, 109, 12040-12045.
-
(2012)
Proceedings of the National Academy of Sciences
, vol.109
, pp. 12040-12045
-
-
Chodavarapu, R.K.1
Feng, S.2
Ding, B.3
-
7
-
-
85019217449
-
Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks
-
in press
-
Cokus SJ, Gugger PF, Sork VL, (2015) Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks. BMC Genomics, in press.
-
(2015)
BMC Genomics
-
-
Cokus, S.J.1
Gugger, P.F.2
Sork, V.L.3
-
8
-
-
84896689071
-
Mapping the epigenetic basis of complex traits
-
Cortijo S, Wardenaar R, Colomé-Tatché M, et al,. (2014) Mapping the epigenetic basis of complex traits. Science, 343, 1145-1148.
-
(2014)
Science
, vol.343
, pp. 1145-1148
-
-
Cortijo, S.1
Wardenaar, R.2
Colomé-Tatché, M.3
-
9
-
-
0035957694
-
Range shifts and adaptive responses to quaternary climate change
-
Davis MB, Shaw RG, (2001) Range shifts and adaptive responses to quaternary climate change. Science, 292, 673-679.
-
(2001)
Science
, vol.292
, pp. 673-679
-
-
Davis, M.B.1
Shaw, R.G.2
-
10
-
-
79960068228
-
High-throughput next generation sequencing: Methods and applications
-
Springer, New York
-
Feng S, Rubbi L, Jacobsen SE, Pellegrini M, (2011) High-throughput next generation sequencing: methods and applications. In: Methods in Molecular Biology, pp. 223-238. Springer, New York.
-
(2011)
Methods in Molecular Biology
, pp. 223-238
-
-
Feng, S.1
Rubbi, L.2
Jacobsen, S.E.3
Pellegrini, M.4
-
11
-
-
80053612343
-
A map of local adaptation in Arabidopsis thaliana
-
Fournier-Level A, Korte A, Cooper MD, Nordborg M, Schmitt J, Wilczek AM, (2011) A map of local adaptation in Arabidopsis thaliana. Science, 334, 86-89.
-
(2011)
Science
, vol.334
, pp. 86-89
-
-
Fournier-Level, A.1
Korte, A.2
Cooper, M.D.3
Nordborg, M.4
Schmitt, J.5
Wilczek, A.M.6
-
13
-
-
33750208632
-
Contrasting patterns of historical colonization in white oaks (Quercus spp.) in California and Europe
-
Grivet D, Deguilloux M, Petit RJ, Sork VL, (2006) Contrasting patterns of historical colonization in white oaks (Quercus spp.) in California and Europe. Molecular Ecology, 15, 4085-4093.
-
(2006)
Molecular Ecology
, vol.15
, pp. 4085-4093
-
-
Grivet, D.1
Deguilloux, M.2
Petit, R.J.3
Sork, V.L.4
-
14
-
-
37349112220
-
Conserving the evolutionary potential of California valley oak (Quercus lobate Née): A multivariate genetic approach to conservation planning
-
Grivet D, Sork VL, Westfall RD, Davis FW, (2008) Conserving the evolutionary potential of California valley oak (Quercus lobate Née): A multivariate genetic approach to conservation planning. Molecular Ecology, 17, 139-156.
-
(2008)
Molecular Ecology
, vol.17
, pp. 139-156
-
-
Grivet, D.1
Sork, V.L.2
Westfall, R.D.3
Davis, F.W.4
-
15
-
-
84876783965
-
Influence of late quaternary climate change on present patterns of genetic variation in valley oak, Quercus lobata Née
-
Gugger PF, Ikefami M, Sork VL, (2013) Influence of late quaternary climate change on present patterns of genetic variation in valley oak, Quercus lobata Née. Molecular Ecology, 22, 3598-3612.
-
(2013)
Molecular Ecology
, vol.22
, pp. 3598-3612
-
-
Gugger, P.F.1
Ikefami, M.2
Sork, V.L.3
-
16
-
-
84887077170
-
Bs-seeker2: A versatile aligning pipeline for bisulfite sequencing data
-
Guo W, Fiziev P, Yan W, et al,. (2013) Bs-seeker2: A versatile aligning pipeline for bisulfite sequencing data. BMC Genomics, 14, 774.
-
(2013)
BMC Genomics
, vol.14
, pp. 774
-
-
Guo, W.1
Fiziev, P.2
Yan, W.3
-
17
-
-
80053587873
-
Adaptation to climate across the Arabidopsis thaliana genome
-
Hancock AM, Brachi B, Faure N, et al,. (2011) Adaptation to climate across the Arabidopsis thaliana genome. Science, 334, 83-86.
-
(2011)
Science
, vol.334
, pp. 83-86
-
-
Hancock, A.M.1
Brachi, B.2
Faure, N.3
-
18
-
-
84896736377
-
How stable 'should' epigenetic modifications be? Insights from adaptive plasticity and bet hedging
-
Herman JJ, Spencer HG, Donohue K, Sultan SE, (2014) How stable 'should' epigenetic modifications be? Insights from adaptive plasticity and bet hedging. Evolution, 68, 632-643.
-
(2014)
Evolution
, vol.68
, pp. 632-643
-
-
Herman, J.J.1
Spencer, H.G.2
Donohue, K.3
Sultan, S.E.4
-
19
-
-
68049107038
-
Transgenerational epigenetic inheritance: Prevalence, mechanisms, and implications for the study of heredity and evolution
-
Jablonka E, Raz G, (2009) Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution. The Quarterly Review of Biology, 84, 131-176.
-
(2009)
The Quarterly Review of Biology
, vol.84
, pp. 131-176
-
-
Jablonka, E.1
Raz, G.2
-
20
-
-
33645130943
-
Nucleotide diversity and linkage disequilibrium in cold-hardiness- and wood quality-related candidate genes in Douglas fir
-
Krutovsky KV, Neale DB, (2005) Nucleotide diversity and linkage disequilibrium in cold-hardiness- and wood quality-related candidate genes in Douglas fir. Genetics, 171, 2029-2041.
-
(2005)
Genetics
, vol.171
, pp. 2029-2041
-
-
Krutovsky, K.V.1
Neale, D.B.2
-
21
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law JA, Jacobsen SE, (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nature Reviews Genetics, 11, 204-220.
-
(2010)
Nature Reviews Genetics
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
22
-
-
84878486976
-
Strong purifying selection at synonymous sites in D. Melanogaster
-
Lawrie DS, Messer PW, Hershberg R, Petrov DA, (2013) Strong purifying selection at synonymous sites in D. melanogaster. PLoS Genetics, 9, e1003527.
-
(2013)
PLoS Genetics
, vol.9
, pp. e1003527
-
-
Lawrie, D.S.1
Messer, P.W.2
Hershberg, R.3
Petrov, D.A.4
-
23
-
-
84881107424
-
RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee
-
Li-Byarlay H, Li Y, Stroud H, et al,. (2013) RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee. Proceedings of the National Academy of Sciences, 110, 12750-12755.
-
(2013)
Proceedings of the National Academy of Sciences
, vol.110
, pp. 12750-12755
-
-
Li-Byarlay, H.1
Li, Y.2
Stroud, H.3
-
24
-
-
84881026985
-
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
-
Long Q, Rabanal FA, Meng D, et al,. (2013) Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nature Genetics, 45, 884-890.
-
(2013)
Nature Genetics
, vol.45
, pp. 884-890
-
-
Long, Q.1
Rabanal, F.A.2
Meng, D.3
-
26
-
-
84892540397
-
Complex patterns of local adaptation in teosinte
-
Pyhäjärvi T, Hufford MB, Mezmouk S, Ross-Ibarra J, (2013) Complex patterns of local adaptation in teosinte. Genome Biology and Evolution, 5, 1594-1609.
-
(2013)
Genome Biology and Evolution
, vol.5
, pp. 1594-1609
-
-
Pyhäjärvi, T.1
Hufford, M.B.2
Mezmouk, S.3
Ross-Ibarra, J.4
-
27
-
-
77949533748
-
What role does heritable epigenetic variation play in phenotypic evolution?
-
Richards CL, Bossdorf O, Pigliucci M, (2010) What role does heritable epigenetic variation play in phenotypic evolution? BioScience, 60, 232-237.
-
(2010)
BioScience
, vol.60
, pp. 232-237
-
-
Richards, C.L.1
Bossdorf, O.2
Pigliucci, M.3
-
28
-
-
37749049147
-
Gene flow and local adaptation in trees
-
Savolainen O, Pyhäjärvi T, Knürr T, (2007) Gene flow and local adaptation in trees. Annual Review of Ecology, Evolution, and Systematics, 38, 595-619.
-
(2007)
Annual Review of Ecology, Evolution, and Systematics
, vol.38
, pp. 595-619
-
-
Savolainen, O.1
Pyhäjärvi, T.2
Knürr, T.3
-
29
-
-
80054837794
-
Transgenerational epigenetic instability is a source of novel methylation variants
-
Schmitz RJ, Schultz MD, Lewsey MG, et al,. (2011) Transgenerational epigenetic instability is a source of novel methylation variants. Science, 334, 369-373.
-
(2011)
Science
, vol.334
, pp. 369-373
-
-
Schmitz, R.J.1
Schultz, M.D.2
Lewsey, M.G.3
-
30
-
-
84874991260
-
Patterns of population epigenomic diversity
-
Schmitz RJ, Schultz MD, Urich MA, et al,. (2013) Patterns of population epigenomic diversity. Nature, 495, 193-198.
-
(2013)
Nature
, vol.495
, pp. 193-198
-
-
Schmitz, R.J.1
Schultz, M.D.2
Urich, M.A.3
-
31
-
-
0033637356
-
The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene
-
Soppe WJ, Jacobsen SE, Alonso-Blanco C, et al,. (2000) The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene. Molecular Cell, 6, 791-802.
-
(2000)
Molecular Cell
, vol.6
, pp. 791-802
-
-
Soppe, W.J.1
Jacobsen, S.E.2
Alonso-Blanco, C.3
-
32
-
-
77956071665
-
Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change
-
Sork VL, Davis FW, Westfall R, et al,. (2010) Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change. Molecular Ecology, 19, 3806-3823.
-
(2010)
Molecular Ecology
, vol.19
, pp. 3806-3823
-
-
Sork, V.L.1
Davis, F.W.2
Westfall, R.3
-
33
-
-
84880141022
-
Putting the landscape into the genomics of trees: Approaches for understanding local adaptation and population responses to changing climate
-
Sork VL, Aitken S, Dyer R, Eckert A, Legendre P, Neale DB, (2013) Putting the landscape into the genomics of trees: Approaches for understanding local adaptation and population responses to changing climate. Tree Genetics & Genomes, 9, 901-911.
-
(2013)
Tree Genetics & Genomes
, vol.9
, pp. 901-911
-
-
Sork, V.L.1
Aitken, S.2
Dyer, R.3
Eckert, A.4
Legendre, P.5
Neale, D.B.6
-
34
-
-
84893716683
-
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
-
Stroud H, Do T, Du J, et al,. (2014) Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nature Structural & Molecular Biology, 21, 64-72.
-
(2014)
Nature Structural & Molecular Biology
, vol.21
, pp. 64-72
-
-
Stroud, H.1
Do, T.2
Du, J.3
-
35
-
-
84876047512
-
Environmental heat and salt stress induce transgenerational phenotypic changes in Arabidopsis thaliana
-
Suter L, Widmer A, (2013) Environmental heat and salt stress induce transgenerational phenotypic changes in Arabidopsis thaliana. PLoS One, 8, e60364.
-
(2013)
PLoS One
, vol.8
, pp. e60364
-
-
Suter, L.1
Widmer, A.2
-
36
-
-
84875949201
-
Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells
-
Vincent JJ, Huang Y, Chen PY, et al,. (2013) Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells. Cell Stem Cell, 12, 470-478.
-
(2013)
Cell Stem Cell
, vol.12
, pp. 470-478
-
-
Vincent, J.J.1
Huang, Y.2
Chen, P.Y.3
-
37
-
-
84855820359
-
Dynamic DNA cytosine methylation in the Populus trichocarpa genome: Tissue-level variation and relationship to gene expression
-
Vining KJ, Pomranaing KR, Wilhelm LG, et al,. (2012) Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression. BMC Genomics, 13, 27.
-
(2012)
BMC Genomics
, vol.13
, pp. 27
-
-
Vining, K.J.1
Pomranaing, K.R.2
Wilhelm, L.G.3
-
38
-
-
60149093076
-
Effects of genetic perturbation on seasonal life history plasticity
-
Wilczek AM, Roe JL, Knapp MC, et al,. (2009) Effects of genetic perturbation on seasonal life history plasticity. Science, 323, 930-934.
-
(2009)
Science
, vol.323
, pp. 930-934
-
-
Wilczek, A.M.1
Roe, J.L.2
Knapp, M.C.3
-
39
-
-
84870231986
-
Epigenetic variation creates potential for evolution of plant phenotypic plasticity
-
Zhang YY, Fischer M, Colot V, Bossdorf O, (2013) Epigenetic variation creates potential for evolution of plant phenotypic plasticity. New Phytologist, 197, 314-322.
-
(2013)
New Phytologist
, vol.197
, pp. 314-322
-
-
Zhang, Y.Y.1
Fischer, M.2
Colot, V.3
Bossdorf, O.4
-
40
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
-
Zhang X, Yazaki J, Sundaresan A, et al,. (2006) Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell, 126, 1189-1201.
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
|