-
1
-
-
67649544341
-
The bacterial community of the horse gastrointestinal tract and its relation to fermentative acidosis, laminitis, colic, and stomach ulcers
-
Al Jassim R.A., Andrews F.M. The bacterial community of the horse gastrointestinal tract and its relation to fermentative acidosis, laminitis, colic, and stomach ulcers. Veterinary Clinics of North America: Equine Practice 2009, 25:199-215.
-
(2009)
Veterinary Clinics of North America: Equine Practice
, vol.25
, pp. 199-215
-
-
Al Jassim, R.A.1
Andrews, F.M.2
-
2
-
-
50949131523
-
Comparative analysis of human gut microbiota by barcoded pyrosequencing
-
e2836
-
Andersson A.F., Lindberg M., Jakobsson H., Bäckhed F., Nyrén P., Engstrand L. Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS ONE 2008, 3. e2836.
-
(2008)
PLoS ONE
, vol.3
-
-
Andersson, A.F.1
Lindberg, M.2
Jakobsson, H.3
Bäckhed, F.4
Nyrén, P.5
Engstrand, L.6
-
3
-
-
0016224977
-
Sites of organic acid production and absorption in the equine gastrointestinal tract
-
Argenzio R.A., Southworth M., Stevens C.E. Sites of organic acid production and absorption in the equine gastrointestinal tract. American Journal of Physiology 1974, 226:1043-1050.
-
(1974)
American Journal of Physiology
, vol.226
, pp. 1043-1050
-
-
Argenzio, R.A.1
Southworth, M.2
Stevens, C.E.3
-
4
-
-
84884882117
-
An in vitro model of the horse gut microbiome enables identification of lactate-utilizing bacteria that differentially respond to starch induction
-
e77599
-
Biddle A.S., Black S.J., Blanchard J.L. An in vitro model of the horse gut microbiome enables identification of lactate-utilizing bacteria that differentially respond to starch induction. PLoS ONE 2013, 8. e77599.
-
(2013)
PLoS ONE
, vol.8
-
-
Biddle, A.S.1
Black, S.J.2
Blanchard, J.L.3
-
5
-
-
84891787231
-
Ribosomal Database Project: Data and tools for high throughput rRNA analysis
-
Cole J.R., Wang Q., Fish J.A., Chai B., McGarrell D.M., Sun Y., Brown C.T., Porras-Alfaro A., Kuske C.R., Tiedje J.M. Ribosomal Database Project: Data and tools for high throughput rRNA analysis. Nucleic Acids Research 2014, 42:D633-D642.
-
(2014)
Nucleic Acids Research
, vol.42
, pp. D633-D642
-
-
Cole, J.R.1
Wang, Q.2
Fish, J.A.3
Chai, B.4
McGarrell, D.M.5
Sun, Y.6
Brown, C.T.7
Porras-Alfaro, A.8
Kuske, C.R.9
Tiedje, J.M.10
-
6
-
-
84864444221
-
Comparison of the fecal microbiota of healthy horses and horses with colitis by high throughput sequencing of the V3-V5 region of the 16S rRNA gene
-
e41484
-
Costa M.C., Arroyo L.G., Allen-Vercoe E., Stämpfli H.R., Kim P.T., Sturgeon A., Weese J.S. Comparison of the fecal microbiota of healthy horses and horses with colitis by high throughput sequencing of the V3-V5 region of the 16S rRNA gene. PLoS ONE 2012, 7. e41484.
-
(2012)
PLoS ONE
, vol.7
-
-
Costa, M.C.1
Arroyo, L.G.2
Allen-Vercoe, E.3
Stämpfli, H.R.4
Kim, P.T.5
Sturgeon, A.6
Weese, J.S.7
-
7
-
-
84924228298
-
Changes in the equine fecal microbiota associated with the use of systemic antimicrobial drugs
-
Costa M.C., Stämpfli H.R., Arroyo L.G., Allen-Vercoe E., Gomes R.G., Weese J.S. Changes in the equine fecal microbiota associated with the use of systemic antimicrobial drugs. BMC Veterinary Research 2015, 11:19.
-
(2015)
BMC Veterinary Research
, vol.11
, pp. 19
-
-
Costa, M.C.1
Stämpfli, H.R.2
Arroyo, L.G.3
Allen-Vercoe, E.4
Gomes, R.G.5
Weese, J.S.6
-
8
-
-
84877151034
-
Characterizing the Microbiota across the gastrointestinal tract of a Brazilian Nelore steer
-
De Oliveira M.N.V., Jewell K.A., Freitas F.S., Benjamin L.A., Tótola M.R., Borges A.C., Moraes C.A., Suen G. Characterizing the Microbiota across the gastrointestinal tract of a Brazilian Nelore steer. Veterinary Microbiology 2013, 164:307-314.
-
(2013)
Veterinary Microbiology
, vol.164
, pp. 307-314
-
-
De Oliveira, M.N.V.1
Jewell, K.A.2
Freitas, F.S.3
Benjamin, L.A.4
Tótola, M.R.5
Borges, A.C.6
Moraes, C.A.7
Suen, G.8
-
9
-
-
84869875590
-
A comparison of the microbiome and the metabolome of different regions of the equine hindgut
-
Dougal K., Harris P.A., Edwards A., Pachebat J.A., Blackmore T.M., Worgan H.J., Newbold C.J. A comparison of the microbiome and the metabolome of different regions of the equine hindgut. FEMS Microbiology Ecology 2012, 82:642-652.
-
(2012)
FEMS Microbiology Ecology
, vol.82
, pp. 642-652
-
-
Dougal, K.1
Harris, P.A.2
Edwards, A.3
Pachebat, J.A.4
Blackmore, T.M.5
Worgan, H.J.6
Newbold, C.J.7
-
10
-
-
84886260382
-
Identification of a core bacterial community within the large intestine of the horse
-
e77660
-
Dougal K., de la Fuente G., Harris P.A., Girdwood S.E., Pinloche E., Newbold C.J. Identification of a core bacterial community within the large intestine of the horse. PLoS ONE 2013, 8. e77660.
-
(2013)
PLoS ONE
, vol.8
-
-
Dougal, K.1
de la Fuente, G.2
Harris, P.A.3
Girdwood, S.E.4
Pinloche, E.5
Newbold, C.J.6
-
11
-
-
84872339381
-
High-level colonisation of the human gut by Verrucomicrobia following broad-spectrum antibiotic treatment
-
Dubourg G., Lagier J.-C., Armougom F., Robert C., Audoly G., Papazian L., Raoult D. High-level colonisation of the human gut by Verrucomicrobia following broad-spectrum antibiotic treatment. International Journal of Antimicrobial Agents 2013, 41:149-155.
-
(2013)
International Journal of Antimicrobial Agents
, vol.41
, pp. 149-155
-
-
Dubourg, G.1
Lagier, J.-C.2
Armougom, F.3
Robert, C.4
Audoly, G.5
Papazian, L.6
Raoult, D.7
-
12
-
-
78650679799
-
Assessing gut microbial diversity from feces and rectal mucosa
-
Durbán A., Abellán J.J., Jiménez-Hernández N., Ponce M., Ponce J., Sala T., D'Auria G., Latorre A., Moya A. Assessing gut microbial diversity from feces and rectal mucosa. Microbial Ecology 2011, 61:123-133.
-
(2011)
Microbial Ecology
, vol.61
, pp. 123-133
-
-
Durbán, A.1
Abellán, J.J.2
Jiménez-Hernández, N.3
Ponce, M.4
Ponce, J.5
Sala, T.6
D'Auria, G.7
Latorre, A.8
Moya, A.9
-
13
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg P.B., Bik E.M., Bernstein C.N., Purdom E., Dethlefsen L., Sargent M., Gill S.R., Nelson K.E., Relman D.A. Diversity of the human intestinal microbial flora. Science 2005, 308:1635-1638.
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
Sargent, M.6
Gill, S.R.7
Nelson, K.E.8
Relman, D.A.9
-
14
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar R.C., Haas B.J., Clemente J.C., Quince C., Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics (Oxford, England) 2011, 27:2194-2200.
-
(2011)
Bioinformatics (Oxford, England)
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
15
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
Frank D.N., St Amand A.L., Feldman R.A., Boedeker E.C., Harpaz N., Pace N.R. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proceedings of the National Academy of Sciences of the United States of America 2007, 104:13780-13785.
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, pp. 13780-13785
-
-
Frank, D.N.1
St Amand, A.L.2
Feldman, R.A.3
Boedeker, E.C.4
Harpaz, N.5
Pace, N.R.6
-
16
-
-
77952225556
-
Comparative studies of microbial populations in the rumen, duodenum, ileum and faeces of lactating dairy cows
-
Frey J.C., Pell A.N., Berthiaume R., Lapierre H., Lee S., Ha J.K., Mendell J.E., Angert E.R. Comparative studies of microbial populations in the rumen, duodenum, ileum and faeces of lactating dairy cows. Journal of Applied Microbiology 2010, 108:1982-1993.
-
(2010)
Journal of Applied Microbiology
, vol.108
, pp. 1982-1993
-
-
Frey, J.C.1
Pell, A.N.2
Berthiaume, R.3
Lapierre, H.4
Lee, S.5
Ha, J.K.6
Mendell, J.E.7
Angert, E.R.8
-
17
-
-
0018028377
-
Changes in the caecal flora associated with the onset of laminitis
-
Garner H.E., Moore J.N., Johnson J.H., Clark L., Amend J.F., Tritschler L.G., Coffmann J.R., Sprouse R.F., Hutcheson D.P., Salem C.A. Changes in the caecal flora associated with the onset of laminitis. Equine Veterinary Journal 1978, 10:249-252.
-
(1978)
Equine Veterinary Journal
, vol.10
, pp. 249-252
-
-
Garner, H.E.1
Moore, J.N.2
Johnson, J.H.3
Clark, L.4
Amend, J.F.5
Tritschler, L.G.6
Coffmann, J.R.7
Sprouse, R.F.8
Hutcheson, D.P.9
Salem, C.A.10
-
18
-
-
27644574002
-
Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism
-
Hayashi H. Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism. Journal of Medical Microbiology 2005, 54:1093-1101.
-
(2005)
Journal of Medical Microbiology
, vol.54
, pp. 1093-1101
-
-
Hayashi, H.1
-
19
-
-
0032771478
-
Identification of Ruminococcus flavefaciens as the predominant cellulolytic bacterial species of the equine cecum
-
Julliand V., de Vaux A., Millet L., Fonty G. Identification of Ruminococcus flavefaciens as the predominant cellulolytic bacterial species of the equine cecum. Applied and Environmental Microbiology 1999, 65:3738-3741.
-
(1999)
Applied and Environmental Microbiology
, vol.65
, pp. 3738-3741
-
-
Julliand, V.1
de Vaux, A.2
Millet, L.3
Fonty, G.4
-
20
-
-
84871808499
-
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
-
Klindworth A., Pruesse E., Schweer T., Peplies J., Quast C., Horn M., Glockner F.O. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Research 2013, 41:e1.
-
(2013)
Nucleic Acids Research
, vol.41
, pp. e1
-
-
Klindworth, A.1
Pruesse, E.2
Schweer, T.3
Peplies, J.4
Quast, C.5
Horn, M.6
Glockner, F.O.7
-
21
-
-
0024077813
-
Enumeration of anaerobic bacterial microflora of the equine gastrointestinal tract
-
Mackie R.I., Wilkins C.A. Enumeration of anaerobic bacterial microflora of the equine gastrointestinal tract. Applied and Environmental Microbiology 1988, 54:2155-2160.
-
(1988)
Applied and Environmental Microbiology
, vol.54
, pp. 2155-2160
-
-
Mackie, R.I.1
Wilkins, C.A.2
-
22
-
-
84892494399
-
Illumina sequencing of the V4 hypervariable region 16S rRNA gene reveals extensive changes in bacterial communities in the cecum following carbohydrate oral infusion and development of early-stage acute laminitis in the horse
-
Moreau M.M., Eades S.C., Reinemeyer C.R., Fugaro M.N., Onishi J.C. Illumina sequencing of the V4 hypervariable region 16S rRNA gene reveals extensive changes in bacterial communities in the cecum following carbohydrate oral infusion and development of early-stage acute laminitis in the horse. Veterinary Microbiology 2014, 168:436-441.
-
(2014)
Veterinary Microbiology
, vol.168
, pp. 436-441
-
-
Moreau, M.M.1
Eades, S.C.2
Reinemeyer, C.R.3
Fugaro, M.N.4
Onishi, J.C.5
-
23
-
-
84865306386
-
Faecal and caecal microbiota profiles of mice do not cluster in the same way
-
Pang W., Vogensen F.K., Nielsen D.S., Hansen A.K. Faecal and caecal microbiota profiles of mice do not cluster in the same way. Laboratory Animals 2012, 46:231-236.
-
(2012)
Laboratory Animals
, vol.46
, pp. 231-236
-
-
Pang, W.1
Vogensen, F.K.2
Nielsen, D.S.3
Hansen, A.K.4
-
24
-
-
79960878444
-
The active human gut microbiota differs from the total microbiota
-
e22448
-
Peris-Bondia F., Latorre A., Artacho A., Moya A., D'Auria G. The active human gut microbiota differs from the total microbiota. PLoS ONE 2011, 6. e22448.
-
(2011)
PLoS ONE
, vol.6
-
-
Peris-Bondia, F.1
Latorre, A.2
Artacho, A.3
Moya, A.4
D'Auria, G.5
-
25
-
-
84861139654
-
Equine stomachs harbor an abundant and diverse mucosal microbiota
-
Perkins G.A., den Bakker H.C., Burton A.J., Erb H.N., McDonough S.P., McDonough P.L., Parker J., Rosenthal R.L., Wiedmann M., Dowd S.E., et al. Equine stomachs harbor an abundant and diverse mucosal microbiota. Applied and Environmental Microbiology 2012, 78:2522-2532.
-
(2012)
Applied and Environmental Microbiology
, vol.78
, pp. 2522-2532
-
-
Perkins, G.A.1
den Bakker, H.C.2
Burton, A.J.3
Erb, H.N.4
McDonough, S.P.5
McDonough, P.L.6
Parker, J.7
Rosenthal, R.L.8
Wiedmann, M.9
Dowd, S.E.10
-
26
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
-
Quast C., Pruesse E., Yilmaz P., Gerken J., Schweer T., Yarza P., Peplies J., Glockner F.O. The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools. Nucleic Acids Research 2013, 41:D590-D596.
-
(2013)
Nucleic Acids Research
, vol.41
, pp. D590-D596
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
Yarza, P.6
Peplies, J.7
Glockner, F.O.8
-
27
-
-
84867615958
-
Suppression of Clostridium difficile in the gastrointestinal tracts of germfree mice inoculated with a murine isolate from the family Lachnospiraceae
-
Reeves A.E., Koenigsknecht M.J., Bergin I.L., Young V.B. Suppression of Clostridium difficile in the gastrointestinal tracts of germfree mice inoculated with a murine isolate from the family Lachnospiraceae. Infection and Immunity 2012, 80:3786-3794.
-
(2012)
Infection and Immunity
, vol.80
, pp. 3786-3794
-
-
Reeves, A.E.1
Koenigsknecht, M.J.2
Bergin, I.L.3
Young, V.B.4
-
28
-
-
0018855591
-
The colonic epithelium in ulcerative colitis: An energy-deficiency disease?
-
Roediger W.E. The colonic epithelium in ulcerative colitis: An energy-deficiency disease?. Lancet 1980, 2:712-715.
-
(1980)
Lancet
, vol.2
, pp. 712-715
-
-
Roediger, W.E.1
-
29
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss P.D., Westcott S.L., Ryabin T., Hall J.R., Hartmann M., Hollister E.B., Lesniewski R.A., Oakley B.B., Parks D.H., Robinson C.J., et al. Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology 2009, 75:7537-7541.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
-
30
-
-
84874816494
-
Comparison of microbial populations in the small intestine, large intestine and feces of healthy horses using terminal restriction fragment length polymorphism
-
Schoster A., Arroyo L.G., Staempfli H.R., Weese J.S. Comparison of microbial populations in the small intestine, large intestine and feces of healthy horses using terminal restriction fragment length polymorphism. BMC Research Notes 2013, 6:91.
-
(2013)
BMC Research Notes
, vol.6
, pp. 91
-
-
Schoster, A.1
Arroyo, L.G.2
Staempfli, H.R.3
Weese, J.S.4
-
31
-
-
83055186550
-
Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons
-
Shepherd M.L., Swecker W.S.J., Jensen R.V., Ponder M.A. Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons. FEMS Microbiology Letters 2012, 326:62-68.
-
(2012)
FEMS Microbiology Letters
, vol.326
, pp. 62-68
-
-
Shepherd, M.L.1
Swecker, W.S.J.2
Jensen, R.V.3
Ponder, M.A.4
-
32
-
-
84869863835
-
Pyrosequencing of 16S rRNA genes in fecal samples reveals high diversity of hindgut microflora in horses and potential links to chronic laminitis
-
Steelman S.M., Chowdhary B.P., Dowd S., Suchodolski J., Janecka J.E. Pyrosequencing of 16S rRNA genes in fecal samples reveals high diversity of hindgut microflora in horses and potential links to chronic laminitis. BMC Veterinary Research 2012, 8:1.
-
(2012)
BMC Veterinary Research
, vol.8
, pp. 1
-
-
Steelman, S.M.1
Chowdhary, B.P.2
Dowd, S.3
Suchodolski, J.4
Janecka, J.E.5
-
33
-
-
27744506733
-
Assessment of the qualitative variation in bacterial microflora among compartments of the intestinal tract of dogs by use of a molecular fingerprinting technique
-
Suchodolski J.S., Ruaux C.G., Steiner J.M., Fetz K., Williams D.A. Assessment of the qualitative variation in bacterial microflora among compartments of the intestinal tract of dogs by use of a molecular fingerprinting technique. American Journal of Veterinary Research 2005, 66:1556-1562.
-
(2005)
American Journal of Veterinary Research
, vol.66
, pp. 1556-1562
-
-
Suchodolski, J.S.1
Ruaux, C.G.2
Steiner, J.M.3
Fetz, K.4
Williams, D.A.5
-
34
-
-
84862499724
-
16S rRNA gene pyrosequencing reveals bacterial dysbiosis in the duodenum of dogs with idiopathic inflammatory bowel disease
-
e39333
-
Suchodolski J.S., Dowd S.E., Wilke V., Steiner J.M., Jergens A.E. 16S rRNA gene pyrosequencing reveals bacterial dysbiosis in the duodenum of dogs with idiopathic inflammatory bowel disease. PLoS ONE 2012, 7. e39333.
-
(2012)
PLoS ONE
, vol.7
-
-
Suchodolski, J.S.1
Dowd, S.E.2
Wilke, V.3
Steiner, J.M.4
Jergens, A.E.5
|