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Volumn 12, Issue 2, 2015, Pages 183-189

Semi-supervised Learning Predicts Approximately One Third of the Alternative Splicing Isoforms as Functional Proteins

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN VARIANT; ISOPROTEIN; PROTEIN;

EID: 84937526994     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2015.06.031     Document Type: Article
Times cited : (18)

References (25)
  • 1
    • 39149126359 scopus 로고    scopus 로고
    • Alternative splicing and protein structure evolution
    • Birzele F., Csaba G., Zimmer R. Alternative splicing and protein structure evolution. Nucleic Acids Res. 2008, 36:550-558.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 550-558
    • Birzele, F.1    Csaba, G.2    Zimmer, R.3
  • 2
    • 77949670309 scopus 로고    scopus 로고
    • Investigating protein isoforms via proteomics: a feasibility study
    • Blakeley P., Siepen J.A., Lawless C., Hubbard S.J. Investigating protein isoforms via proteomics: a feasibility study. Proteomics 2010, 10:1127-1140.
    • (2010) Proteomics , vol.10 , pp. 1127-1140
    • Blakeley, P.1    Siepen, J.A.2    Lawless, C.3    Hubbard, S.J.4
  • 3
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili M.N., Trapnell C., Goff L., Koziol M., Tazon-Vega B., Regev A., Rinn J.L. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011, 25:1915-1927.
    • (2011) Genes Dev. , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 4
    • 0026252643 scopus 로고
    • Tenascin variants: differential binding to fibronectin and distinct distribution in cell cultures and tissues
    • Chiquet-Ehrismann R., Matsuoka Y., Hofer U., Spring J., Bernasconi C., Chiquet M. Tenascin variants: differential binding to fibronectin and distinct distribution in cell cultures and tissues. Cell Regul. 1991, 2:927-938.
    • (1991) Cell Regul. , vol.2 , pp. 927-938
    • Chiquet-Ehrismann, R.1    Matsuoka, Y.2    Hofer, U.3    Spring, J.4    Bernasconi, C.5    Chiquet, M.6
  • 6
    • 11144320641 scopus 로고    scopus 로고
    • Open source system for analyzing, validating, and storing protein identification data
    • Craig R., Cortens J.P., Beavis R.C. Open source system for analyzing, validating, and storing protein identification data. J. Proteome Res. 2004, 3:1234-1242.
    • (2004) J. Proteome Res. , vol.3 , pp. 1234-1242
    • Craig, R.1    Cortens, J.P.2    Beavis, R.C.3
  • 9
    • 84865448443 scopus 로고    scopus 로고
    • Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function
    • Ezkurdia I., del Pozo A., Frankish A., Rodriguez J.M., Harrow J., Ashman K., Valencia A., Tress M.L. Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function. Mol. Biol. Evol. 2012, 29:2265-2283.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 2265-2283
    • Ezkurdia, I.1    del Pozo, A.2    Frankish, A.3    Rodriguez, J.M.4    Harrow, J.5    Ashman, K.6    Valencia, A.7    Tress, M.L.8
  • 10
    • 79958153915 scopus 로고    scopus 로고
    • MAISTAS: a tool for automatic structural evaluation of alternative splicing products
    • Floris M., Raimondo D., Leoni G., Orsini M., Marcatili P., Tramontano A. MAISTAS: a tool for automatic structural evaluation of alternative splicing products. Bioinformatics 2011, 27:1625-1629.
    • (2011) Bioinformatics , vol.27 , pp. 1625-1629
    • Floris, M.1    Raimondo, D.2    Leoni, G.3    Orsini, M.4    Marcatili, P.5    Tramontano, A.6
  • 11
    • 73549101052 scopus 로고    scopus 로고
    • Intrinsic structural disorder confers cellular viability on oncogenic fusion proteins
    • Hegyi H., Buday L., Tompa P. Intrinsic structural disorder confers cellular viability on oncogenic fusion proteins. PLoS Comput. Biol. 2009, 5:e1000552.
    • (2009) PLoS Comput. Biol. , vol.5 , pp. e1000552
    • Hegyi, H.1    Buday, L.2    Tompa, P.3
  • 12
    • 79952351014 scopus 로고    scopus 로고
    • Verification of alternative splicing variants based on domain integrity, truncation length and intrinsic protein disorder
    • Hegyi H., Kalmar L., Horvath T., Tompa P. Verification of alternative splicing variants based on domain integrity, truncation length and intrinsic protein disorder. Nucleic Acids Res. 2011, 39:1208-1219.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 1208-1219
    • Hegyi, H.1    Kalmar, L.2    Horvath, T.3    Tompa, P.4
  • 15
    • 69049116283 scopus 로고    scopus 로고
    • Stochastic noise in splicing machinery
    • Melamud E., Moult J. Stochastic noise in splicing machinery. Nucleic Acids Res. 2009, 37:4873-4886.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 4873-4886
    • Melamud, E.1    Moult, J.2
  • 16
    • 69049120339 scopus 로고    scopus 로고
    • Structural implication of splicing stochastics
    • Melamud E., Moult J. Structural implication of splicing stochastics. Nucleic Acids Res. 2009, 37:4862-4872.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 4862-4872
    • Melamud, E.1    Moult, J.2
  • 19
    • 79955925635 scopus 로고    scopus 로고
    • Assessing the contribution of alternative splicing to proteome diversity in Arabidopsis thaliana using proteomics data
    • Severing E.I., van Dijk A.D., van Ham R.C. Assessing the contribution of alternative splicing to proteome diversity in Arabidopsis thaliana using proteomics data. BMC Plant Biol. 2011, 11:82.
    • (2011) BMC Plant Biol. , vol.11 , pp. 82
    • Severing, E.I.1    van Dijk, A.D.2    van Ham, R.C.3
  • 22
    • 57449088165 scopus 로고    scopus 로고
    • Proteomics studies confirm the presence of alternative protein isoforms on a large scale
    • Tress M.L., Bodenmiller B., Aebersold R., Valencia A. Proteomics studies confirm the presence of alternative protein isoforms on a large scale. Genome Biol. 2008, 9:R162.
    • (2008) Genome Biol. , vol.9 , pp. R162
    • Tress, M.L.1    Bodenmiller, B.2    Aebersold, R.3    Valencia, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.