-
1
-
-
2942616775
-
Antarctic genomics
-
COI: 1:CAS:528:DC%2BD2cXjvFCis70%3D
-
Clark MS, Clarke A, Cockell CS, Convey P, Detrich HW 3rd, Fraser KP, Johnston IA, Methe BA, Murray AE, Peck LS, Römisch K, Rogers AD (2004) Antarctic genomics. Comput Funct Genomics 5(3):230–238
-
(2004)
Comput Funct Genomics
, vol.5
, Issue.3
, pp. 230-238
-
-
Clark, M.S.1
Clarke, A.2
Cockell, C.S.3
Convey, P.4
Detrich, H.W.5
Fraser, K.P.6
Johnston, I.A.7
Methe, B.A.8
Murray, A.E.9
Peck, L.S.10
Römisch, K.11
Rogers, A.D.12
-
3
-
-
0030431851
-
Biodiversity at the microbial level: the number of free-living ciliates in the biosphere
-
Finlay BJ, Corliss JO, Esteban G, Fenchel T (1996) Biodiversity at the microbial level: the number of free-living ciliates in the biosphere. Q Rev Biol 3:221–237
-
(1996)
Q Rev Biol
, vol.3
, pp. 221-237
-
-
Finlay, B.J.1
Corliss, J.O.2
Esteban, G.3
Fenchel, T.4
-
4
-
-
84875868879
-
Prevalence of partnerships between bacteria and ciliates in oxygen-depleted marine water columns
-
Orsi W, Charvet S, Vd’ačný P, Bernhard JM, Edgcomb VP (2012) Prevalence of partnerships between bacteria and ciliates in oxygen-depleted marine water columns. Front Microbiol 19(3):341
-
(2012)
Front Microbiol
, vol.19
, Issue.3
, pp. 341
-
-
Orsi, W.1
Charvet, S.2
Vd’ačný, P.3
Bernhard, J.M.4
Edgcomb, V.P.5
-
5
-
-
84895154643
-
Living together in the plankton: a survey of marine protist symbioses
-
COI: 1:CAS:528:DC%2BC2cXksVaksw%3D%3D
-
Anderson OR (2014) Living together in the plankton: a survey of marine protist symbioses. Acta Protozool 53(199):29–38
-
(2014)
Acta Protozool
, vol.53
, Issue.199
, pp. 29-38
-
-
Anderson, O.R.1
-
6
-
-
79951513896
-
Detection of a novel subspecies of Francisella noatunensis as endosymbiont of the ciliate Euplotes raikovi
-
Schrallhammer M, Schweikert M, Vallesi A, Verni F, Petroni G (2011) Detection of a novel subspecies of Francisella noatunensis as endosymbiont of the ciliate Euplotes raikovi. Microb Ecol 61(2):455–464. doi:10.1007/s00248-010-9772-9
-
(2011)
Microb Ecol
, vol.61
, Issue.2
, pp. 455-464
-
-
Schrallhammer, M.1
Schweikert, M.2
Vallesi, A.3
Verni, F.4
Petroni, G.5
-
7
-
-
85025367043
-
The biology of free-living anaerobic ciliates
-
Fenchel T, Finlay BJ (1991) The biology of free-living anaerobic ciliates. Eur J Protistol 22;26(3-4):201-215. doi: 10.1016/S0932-4739(11)80143-4
-
(1991)
Eur J Protistol 22;26(3-4)
, pp. 201-215
-
-
Fenchel, T.1
Finlay, B.J.2
-
8
-
-
0027287931
-
Endosymbiotic purple non sulphur bacteria in an anaerobic ciliated protozoon
-
COI: 1:CAS:528:DyaK3sXltFehtL8%3D
-
Fenchel T, Bernard C (1993) Endosymbiotic purple non sulphur bacteria in an anaerobic ciliated protozoon. FEMS Microbiol Lett 110:21–25
-
(1993)
FEMS Microbiol Lett
, vol.110
, pp. 21-25
-
-
Fenchel, T.1
Bernard, C.2
-
9
-
-
0034652128
-
Defensive extrusive ectosymbionts of Euplotidium (Ciliophora) that contain microtubule-like structures are bacteria related to Verrucomicrobia
-
Petroni G, Spring S, Schleifer KH, Verni F, Rosati G (2000) Defensive extrusive ectosymbionts of Euplotidium (Ciliophora) that contain microtubule-like structures are bacteria related to Verrucomicrobia. Proc Natl Acad Sci U S A 97(4):1813–1817
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, Issue.4
, pp. 1813-1817
-
-
Petroni, G.1
Spring, S.2
Schleifer, K.H.3
Verni, F.4
Rosati, G.5
-
11
-
-
84873846821
-
Linking the gut microbiota to human health
-
COI: 1:CAS:528:DC%2BC3sXhsFCgs7g%3D, PID: 23360877
-
Robles Alonso V, Guarner F (2013) Linking the gut microbiota to human health. Br J Nutr 109(Suppl 2):S21–6
-
(2013)
Br J Nutr
, vol.109
, pp. S21-S26
-
-
Robles Alonso, V.1
Guarner, F.2
-
12
-
-
85018116293
-
Symbiosis insights through metagenomic analysis of a microbial consortium. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory
-
Woyke T, Teeling H, Ivanova NN, Hunteman M, Richter M, Gloeckner FO et al.(2006). Symbiosis insights through metagenomic analysis of a microbial consortium. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://escholarship.org/uc/item/0mx2050n
-
(2006)
Retrieved from:
-
-
Woyke, T.1
Teeling, H.2
Ivanova, N.N.3
Hunteman, M.4
Richter, M.5
Gloeckner, F.O.6
-
13
-
-
0141560230
-
Culturable and nonculturable bacterial symbionts in the toxic benthic dinoflagellate
-
COI: 1:CAS:528:DC%2BD3sXntl2jtL8%3D
-
Ashton M, Rosado W, Govind NS, Tosteson TR (2003) Culturable and nonculturable bacterial symbionts in the toxic benthic dinoflagellate. Ostreopsis Lenticularis Toxicon 42(4):419–424
-
(2003)
Ostreopsis Lenticularis Toxicon
, vol.42
, Issue.4
, pp. 419-424
-
-
Ashton, M.1
Rosado, W.2
Govind, N.S.3
Tosteson, T.R.4
-
14
-
-
49349096522
-
Bacteria associated with toxic clonal cultures of the dinoflagellate Ostreopsis lenticularis
-
PID: 18365282
-
Pérez-Guzmán L, Pérez-Matos AE, Rosado W, Tosteson TR, Govind NS (2008) Bacteria associated with toxic clonal cultures of the dinoflagellate Ostreopsis lenticularis. Mar Biotechnol 10(5):492–6
-
(2008)
Mar Biotechnol
, vol.10
, Issue.5
, pp. 492-496
-
-
Pérez-Guzmán, L.1
Pérez-Matos, A.E.2
Rosado, W.3
Tosteson, T.R.4
Govind, N.S.5
-
15
-
-
0027844168
-
Biology of Euplotes focardii an Antarctic ciliate
-
Valbonesi A, Luporini P (1993) Biology of Euplotes focardii an Antarctic ciliate. Polar Biol 13:489–493
-
(1993)
Polar Biol
, vol.13
, pp. 489-493
-
-
Valbonesi, A.1
Luporini, P.2
-
16
-
-
65649131623
-
Molecular cold-adaptation of protein function and gene regulation: the case for comparative genomic analyses in marine ciliated protozoa
-
PID: 21798173
-
Pucciarelli S, la Terza A, Ballarini P, Barchetta S, Yu T, Marziale F, Passini V, Methé B, Detrich HW 3rd, Miceli C (2009) Molecular cold-adaptation of protein function and gene regulation: the case for comparative genomic analyses in marine ciliated protozoa. Mar Genomics 2(1):57–66
-
(2009)
Mar Genomics
, vol.2
, Issue.1
, pp. 57-66
-
-
Pucciarelli, S.1
la Terza, A.2
Ballarini, P.3
Barchetta, S.4
Yu, T.5
Marziale, F.6
Passini, V.7
Methé, B.8
Detrich, H.W.9
Miceli, C.10
-
17
-
-
0035052289
-
Divergence between two Antarctic species of the ciliate Euplotes, E. focardii and E. nobilii, in the expression of heat-shock protein 70 genes
-
PID: 11348511
-
la Terza A, Papa G, Miceli C, Luporini P (2001) Divergence between two Antarctic species of the ciliate Euplotes, E. focardii and E. nobilii, in the expression of heat-shock protein 70 genes. Mol Ecol 10(4):1061–7
-
(2001)
Mol Ecol
, vol.10
, Issue.4
, pp. 1061-1067
-
-
la Terza, A.1
Papa, G.2
Miceli, C.3
Luporini, P.4
-
18
-
-
84883302841
-
Characterization and comparative analysis of psychrophilic and mesophilic alpha-amylases from Euplotes species: a contribution to the understanding of enzyme thermal adaptation
-
Yang G, Yang G, Aprile L, Turturo V, Pucciarelli S, Pucciarelli S, Miceli C (2013) Characterization and comparative analysis of psychrophilic and mesophilic alpha-amylases from Euplotes species: a contribution to the understanding of enzyme thermal adaptation. Biochem Biophys Res Commun 438(4):715–20
-
(2013)
Biochem Biophys Res Commun
, vol.438
, Issue.4
, pp. 715-720
-
-
Yang, G.1
Yang, G.2
Aprile, L.3
Turturo, V.4
Pucciarelli, S.5
Pucciarelli, S.6
Miceli, C.7
-
19
-
-
84881168745
-
Characterization of the first eukaryotic cold-adapted patatin-like phospholipase from the psychrophilic Euplotes focardii: identification of putative determinants of thermal-adaptation by comparison with the homologous protein from the mesophilic Euplotes crassus
-
Yang G, de Santi C, de Pascale D, Pucciarelli S, Pucciarelli S, Miceli C (2013) Characterization of the first eukaryotic cold-adapted patatin-like phospholipase from the psychrophilic Euplotes focardii: identification of putative determinants of thermal-adaptation by comparison with the homologous protein from the mesophilic Euplotes crassus. Biochimie 95(9):1795–806
-
(2013)
Biochimie
, vol.95
, Issue.9
, pp. 1795-1806
-
-
Yang, G.1
de Santi, C.2
de Pascale, D.3
Pucciarelli, S.4
Pucciarelli, S.5
Miceli, C.6
-
20
-
-
84921854864
-
Tubulin folding: the special case of a beta-tubulin isotype from the Antarctic psychrophilic ciliate Euplotes focardii
-
Pucciarelli S, Chiappori F, Sparvoli D, Milanesi L, Miceli C, Melki R (2013) Tubulin folding: the special case of a beta-tubulin isotype from the Antarctic psychrophilic ciliate Euplotes focardii. Polar Biol 36(12):1833–1838
-
(2013)
Polar Biol
, vol.36
, Issue.12
, pp. 1833-1838
-
-
Pucciarelli, S.1
Chiappori, F.2
Sparvoli, D.3
Milanesi, L.4
Miceli, C.5
Melki, R.6
-
21
-
-
84857794404
-
Structural thermal adaptation of β-tubulins from the Antarctic psychrophilic protozoan Euplotes focardii
-
COI: 1:CAS:528:DC%2BC38XhtFaht7k%3D, PID: 22275059
-
Chiappori F, Pucciarelli S, Merelli I, Ballarini P, Miceli C, Milanesi L (2012) Structural thermal adaptation of β-tubulins from the Antarctic psychrophilic protozoan Euplotes focardii. Proteins 80(4):1154–66
-
(2012)
Proteins
, vol.80
, Issue.4
, pp. 1154-1166
-
-
Chiappori, F.1
Pucciarelli, S.2
Merelli, I.3
Ballarini, P.4
Miceli, C.5
Milanesi, L.6
-
22
-
-
53849107481
-
Different roles of two gamma-tubulin isotypes in the cytoskeleton of the Antarctic ciliate Euplotes focardii: remodelling of interaction surfaces may enhance microtubule nucleation at low temperature
-
Marziale F, Pucciarelli S, Ballarini P, Melki R, Uzun A, Ilyin VA, Detrich HW 3rd, Miceli C (2008) Different roles of two gamma-tubulin isotypes in the cytoskeleton of the Antarctic ciliate Euplotes focardii: remodelling of interaction surfaces may enhance microtubule nucleation at low temperature. FEBS J 275(21):5367–82
-
(2008)
FEBS J
, vol.275
, Issue.21
, pp. 5367-5382
-
-
Marziale, F.1
Pucciarelli, S.2
Ballarini, P.3
Melki, R.4
Uzun, A.5
Ilyin, V.A.6
Detrich, H.W.7
Miceli, C.8
-
23
-
-
26844555780
-
Ribosomal cold-adaptation: characterization of the genes encoding the acidic ribosomal P0 and P2 proteins from the Antarctic ciliate Euplotes focardii
-
Pucciarelli S, Marziale F, di Giuseppe G, Barchetta S, Miceli C (2005) Ribosomal cold-adaptation: characterization of the genes encoding the acidic ribosomal P0 and P2 proteins from the Antarctic ciliate Euplotes focardii. Gene 360(2):103–10
-
(2005)
Gene
, vol.360
, Issue.2
, pp. 103-110
-
-
Pucciarelli, S.1
Marziale, F.2
di Giuseppe, G.3
Barchetta, S.4
Miceli, C.5
-
24
-
-
0036783049
-
Characterization of the cold-adapted alpha-tubulin from the psychrophilic ciliate Euplotes focardii
-
COI: 1:CAS:528:DC%2BD38XnvVCisbo%3D, PID: 12382114
-
Pucciarelli S, Miceli C (2002) Characterization of the cold-adapted alpha-tubulin from the psychrophilic ciliate Euplotes focardii. Extremophiles 6(5):385–389
-
(2002)
Extremophiles
, vol.6
, Issue.5
, pp. 385-389
-
-
Pucciarelli, S.1
Miceli, C.2
-
25
-
-
0024668982
-
Isolation and structural characterization of cDNA clones encoding the mating pheromone Er-1 secreted by the ciliate Euplotes raikovi
-
COI: 1:CAS:528:DyaK3cXhtlensb4%3D, PID: 2470086
-
Miceli C, la Terza A, Melli M (1989) Isolation and structural characterization of cDNA clones encoding the mating pheromone Er-1 secreted by the ciliate Euplotes raikovi. Proc Natl Acad Sci U S A 86(9):3016–3020
-
(1989)
Proc Natl Acad Sci U S A
, vol.86
, Issue.9
, pp. 3016-3020
-
-
Miceli, C.1
la Terza, A.2
Melli, M.3
-
26
-
-
33847702910
-
MEGAN analysis of metagenomic data
-
COI: 1:CAS:528:DC%2BD2sXis12hsr8%3D, PID: 17255551
-
Huson DH, Auch AF, Qi J, Schuster SC (2007) MEGAN analysis of metagenomic data. Genome Res 17(3):377–86
-
(2007)
Genome Res
, vol.17
, Issue.3
, pp. 377-386
-
-
Huson, D.H.1
Auch, A.F.2
Qi, J.3
Schuster, S.C.4
-
27
-
-
78651266825
-
Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource
-
Sun S, Chen J, Li W, Altintas I, Lin A, Peltier S, Stocks K, Allen EE, Ellisman M, Grethe J, Wooley J (2011) Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. Nucleic Acids Res. D546-51. doi: 10.1093/nar/gkq1102
-
(2011)
Nucleic Acids Res
, pp. D546-D551
-
-
Sun, S.1
Chen, J.2
Li, W.3
Altintas, I.4
Lin, A.5
Peltier, S.6
Stocks, K.7
Allen, E.E.8
Ellisman, M.9
Grethe, J.10
Wooley, J.11
-
28
-
-
84858077472
-
The Pfam protein families database
-
Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer ELL, Eddy SR, Bateman A, Finn RD (2012) The Pfam protein families database. Nucleic Acids Res 40:290–301
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 290-301
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
Mistry, J.4
Tate, J.5
Boursnell, C.6
Pang, N.7
Forslund, K.8
Ceric, G.9
Clements, J.10
Heger, A.11
Holm, L.12
Sonnhammer, E.L.L.13
Eddy, S.R.14
Bateman, A.15
Finn, R.D.16
-
29
-
-
0037249633
-
-
COI: 1:CAS:528:DC%2BD3sXhvFSmtLg%3D, PID: 12520025
-
Haft DH, Selengut JD, White O, The TIGRFAMs database of protein families (2003) Nucleic Acids Res 31(1):371–373
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 371-373
-
-
Haft, D.H.1
Selengut, J.D.2
White, O.3
-
30
-
-
0033956060
-
The COG database: a tool for genome-scale analysis of protein functions and evolution
-
Tatusov RL, Galperin MY, Natale DA, Koonin EV (2003) The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res 28(1):33–36
-
(2003)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
31
-
-
71749111168
-
Analysis and comparison of very large metagenomes with fast clustering and functional annotation
-
Li W (2009) Analysis and comparison of very large metagenomes with fast clustering and functional annotation. BMC Bioinforma 10:359. doi:10.1186/1471-2105-10-359
-
(2009)
BMC Bioinforma
, vol.10
, pp. 359
-
-
Li, W.1
-
32
-
-
79960030549
-
CoMet--a web server for comparative functional profiling of metagenomes
-
Lingner T, Asshauer KP, Schreiber F, Meinicke P. (2011) CoMet--a web server for comparative functional profiling of metagenomes. Nucleic Acids Res. 39 (Web Server issue):W518-23. doi: 10.1093/nar/gkr388.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.Web Server issue
, pp. W518-W523
-
-
Lingner, T.1
Asshauer, K.P.2
Schreiber, F.3
Meinicke, P.4
-
33
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
COI: 1:CAS:528:DC%2BD1cXhtFGmtg%3D%3D, PID: 17947321
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35:7188–7196. doi:10.1093/nar/gkm864
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glöckner, F.O.7
-
34
-
-
2542523843
-
ARB: a software environment for sequence data
-
COI: 1:CAS:528:DC%2BD2cXhvFSqu7k%3D, PID: 14985472
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H et al (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32:1363–1371. doi:10.1093/nar/gkh293
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
-
35
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
PID: 14530136
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696–704
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
36
-
-
84864453108
-
jModelTest 2: more models, new heuristics and parallel computing
-
COI: 1:CAS:528:DC%2BC38XhtFWmsbfP, PID: 22847109
-
Darriba D, Taboada GL, Doallo R, Posada D (2012) jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9(8):772
-
(2012)
Nat Methods
, vol.9
, Issue.8
, pp. 772
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
37
-
-
78649326452
-
AFP-Pred: a random forest approach for predicting antifreeze proteins from sequence-derived properties
-
COI: 1:CAS:528:DC%2BC3MXjsVCjtg%3D%3D, PID: 21056045
-
Kandaswamy KK, Chou KC, Martinetz T, Moller S, Suganthan PN, Sridharan S, Pugalenthi G (2011) AFP-Pred: a random forest approach for predicting antifreeze proteins from sequence-derived properties. J Theor Biol 270(1):56–62. doi:10.1016/j.jtbi.2010.10.037
-
(2011)
J Theor Biol
, vol.270
, Issue.1
, pp. 56-62
-
-
Kandaswamy, K.K.1
Chou, K.C.2
Martinetz, T.3
Moller, S.4
Suganthan, P.N.5
Sridharan, S.6
Pugalenthi, G.7
-
38
-
-
79957871406
-
Identification of antifreeze proteins and their functional residues by support vector machine and genetic algorithms based on n-peptide compositions
-
COI: 1:CAS:528:DC%2BC3MXntFWks7Y%3D, PID: 21655262
-
Yu CS, Lu CH (2011) Identification of antifreeze proteins and their functional residues by support vector machine and genetic algorithms based on n-peptide compositions. PLoS One 6(5):e20445. doi:10.1371/journal.pone.0020445
-
(2011)
PLoS One
, vol.6
, Issue.5
, pp. e20445
-
-
Yu, C.S.1
Lu, C.H.2
-
39
-
-
84898429033
-
Metagenome sequencing of prokaryotic microbiota collected from Byron Glacier, Alaska
-
Choudhari S, Smith S, Owens S, Gilbert JA, Shain DH, Dial RJ, Grigoriev A (2013) Metagenome sequencing of prokaryotic microbiota collected from Byron Glacier, Alaska. Genome Announc 21;1(2):e0009913. doi: 10.1128/genomeA.00099-13
-
(2013)
Genome Announc 21;1(2)
, vol.e0009913
-
-
Choudhari, S.1
Smith, S.2
Owens, S.3
Gilbert, J.A.4
Shain, D.H.5
Dial, R.J.6
Grigoriev, A.7
-
40
-
-
0031894836
-
Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov., and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of ‘Flectobacillus glomeratus’ as Polaribacter glomeratus comb. nov
-
PID: 9542092
-
Gosink JJ, Woese CR, Staley JT (1998) Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov., and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of ‘Flectobacillus glomeratus’ as Polaribacter glomeratus comb. nov. Int J Syst Bacteriol 48(1):223–235
-
(1998)
Int J Syst Bacteriol
, vol.48
, Issue.1
, pp. 223-235
-
-
Gosink, J.J.1
Woese, C.R.2
Staley, J.T.3
-
41
-
-
23344439437
-
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses
-
Methé BA, Nelson KE, Deming JW, Momen B, Melamud E, Zhang X et al (2005) The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. Proc Natl Acad Sci U S A 102(31):10913–8
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.31
, pp. 10913-10918
-
-
Methé, B.A.1
Nelson, K.E.2
Deming, J.W.3
Momen, B.4
Melamud, E.5
Zhang, X.6
-
42
-
-
0031729883
-
Reclassification of marine Agrobacterium species: proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb, nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev
-
COI: 1:CAS:528:DyaK1cXmvF2ntr8%3D, PID: 12501429
-
Uchino Y, Hirata A, Yokota A, Sugiyama J (1998) Reclassification of marine Agrobacterium species: proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb, nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev. J Gen Appl Microbiol 44(3):201–210
-
(1998)
J Gen Appl Microbiol
, vol.44
, Issue.3
, pp. 201-210
-
-
Uchino, Y.1
Hirata, A.2
Yokota, A.3
Sugiyama, J.4
-
43
-
-
84856203458
-
Porticoccus hydrocarbonoclasticus sp. nov., an aromatic hydrocarbon-degrading bacterium identified in laboratory cultures of marine phytoplankton
-
Gutierrez T, Nichols PD, Whitman WB, Aitken MD (2012) Porticoccus hydrocarbonoclasticus sp. nov., an aromatic hydrocarbon-degrading bacterium identified in laboratory cultures of marine phytoplankton. Appl Environ Microbiol 78(3):628–37
-
(2012)
Appl Environ Microbiol
, vol.78
, Issue.3
, pp. 628-637
-
-
Gutierrez, T.1
Nichols, P.D.2
Whitman, W.B.3
Aitken, M.D.4
-
44
-
-
0035192767
-
Arenibacter gen. nov., new genus of the family Flavobacteriaceae and description of a new species, Arenibacter latericius sp nov
-
COI: 1:CAS:528:DC%2BD38XisFKltw%3D%3D, PID: 11760939
-
Ivanova EP, Nedashkovskaya OI, Chun J, Lysenko AM, Frolova GM, Svetashev VI, Vysotskii MV, Mikhailov VV, Huq A, Colwell RR (2001) Arenibacter gen. nov., new genus of the family Flavobacteriaceae and description of a new species, Arenibacter latericius sp nov. Int J Syst Evol Microbiol 51(6):1987–1995
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, Issue.6
, pp. 1987-1995
-
-
Ivanova, E.P.1
Nedashkovskaya, O.I.2
Chun, J.3
Lysenko, A.M.4
Frolova, G.M.5
Svetashev, V.I.6
Vysotskii, M.V.7
Mikhailov, V.V.8
Huq, A.9
Colwell, R.R.10
-
45
-
-
4344573088
-
Identification of the bacterial endosymbionts of the marine ciliate Euplotes magnicirratus (Ciliophora, Hypotrichia) and proposal of ‘Candidatus Devosia euplotis’
-
Vannini C, Rosati G, Verni F, Petroni G (2004) Identification of the bacterial endosymbionts of the marine ciliate Euplotes magnicirratus (Ciliophora, Hypotrichia) and proposal of ‘Candidatus Devosia euplotis’. Int J Syst Evol Microbiol 54(Pt 4):1151–1156
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 1151-1156
-
-
Vannini, C.1
Rosati, G.2
Verni, F.3
Petroni, G.4
-
46
-
-
33845752038
-
Methylotenera mobilis gen. nov., sp. nov., an obligately methelamine-utilizing bacterium within the family Methylophilaceae
-
COI: 1:CAS:528:DC%2BD2sXhtVWmsbc%3D, PID: 17158982
-
Kalyuzhnaya MG, Bowerman S, Lara JC, Lidstrom ME, Chistoserdova L (2006) Methylotenera mobilis gen. nov., sp. nov., an obligately methelamine-utilizing bacterium within the family Methylophilaceae. Int J Syst Evol Microbiol 56(12):2819–2823
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, Issue.12
, pp. 2819-2823
-
-
Kalyuzhnaya, M.G.1
Bowerman, S.2
Lara, J.C.3
Lidstrom, M.E.4
Chistoserdova, L.5
-
47
-
-
84877090640
-
Poles apart: arctic and antarctic octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin
-
COI: 1:CAS:528:DC%2BC3sXns1OrtL0%3D, PID: 23671678
-
Vollmers J, Voget S, Dietrich S, Gollnow K, Smits M, Meyer K, Brinkhoff T, Simon M, Daniel R (2013) Poles apart: arctic and antarctic octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin. PLoS One 8(5):e63422. doi:10.1371/journal.pone.0063422
-
(2013)
PLoS One
, vol.8
, Issue.5
, pp. e63422
-
-
Vollmers, J.1
Voget, S.2
Dietrich, S.3
Gollnow, K.4
Smits, M.5
Meyer, K.6
Brinkhoff, T.7
Simon, M.8
Daniel, R.9
-
48
-
-
84891861059
-
Diversity of both the cultivable protease-producing bacteria and bacterial extracellular proteases in the coastal sediments of King George Island, Antarctica
-
COI: 1:CAS:528:DC%2BC3sXhslGisbzE, PID: 24223990
-
Zhou MY, Wang GL, Li D, Zhao DL, Qin QL, Chen XL, Chen B, Zhou BC, Zhang XY, Zhang YZ (2013) Diversity of both the cultivable protease-producing bacteria and bacterial extracellular proteases in the coastal sediments of King George Island, Antarctica. PLoS One 8(11):e79668. doi:10.1371/journal.pone.0079668
-
(2013)
PLoS One
, vol.8
, Issue.11
, pp. e79668
-
-
Zhou, M.Y.1
Wang, G.L.2
Li, D.3
Zhao, D.L.4
Qin, Q.L.5
Chen, X.L.6
Chen, B.7
Zhou, B.C.8
Zhang, X.Y.9
Zhang, Y.Z.10
-
49
-
-
0345357141
-
Solute accumulation in the deep-sea bacterium Photobacterium profundum
-
Martin DD, Bartlett DH, Roberts MF (2002) Solute accumulation in the deep-sea bacterium Photobacterium profundum. Extremophiles 6(6):507–14
-
(2002)
Extremophiles
, vol.6
, Issue.6
, pp. 507-514
-
-
Martin, D.D.1
Bartlett, D.H.2
Roberts, M.F.3
-
50
-
-
0037545506
-
Homologous npdGI genes in 2,4-dinitrophenol- and 4-nitrophenol-degrading Rhodococcus spp
-
Heiss G, Trachtmann N, Abe Y, Takeo M, Knackmuss HJ (2003) Homologous npdGI genes in 2,4-dinitrophenol- and 4-nitrophenol-degrading Rhodococcus spp. Appl Environ Microbiol 69(5):2748–2754
-
(2003)
Appl Environ Microbiol
, vol.69
, Issue.5
, pp. 2748-2754
-
-
Heiss, G.1
Trachtmann, N.2
Abe, Y.3
Takeo, M.4
Knackmuss, H.J.5
-
51
-
-
0025605736
-
Reduced coenzyme F420: heterodisulfide oxidoreductase, a proton-translocating redox system in methanogenic bacteria
-
COI: 1:CAS:528:DyaK3MXlslKgtA%3D%3D, PID: 11607121
-
Deppenmeier U, Blaut M, Mahlmann A, Gottschalk G (1990) Reduced coenzyme F420: heterodisulfide oxidoreductase, a proton-translocating redox system in methanogenic bacteria. Proc Natl Acad Sci U S A 87(23):9449–9453
-
(1990)
Proc Natl Acad Sci U S A
, vol.87
, Issue.23
, pp. 9449-9453
-
-
Deppenmeier, U.1
Blaut, M.2
Mahlmann, A.3
Gottschalk, G.4
-
52
-
-
78751562995
-
Comparative genomic analysis of fruiting body formation in Myxococcales
-
Huntley S, Hamann N, Wegener-Feldbrügge S, Treuner-Lange A, Kube M, Reinhardt R, Klages S, Müller R, Ronning CM, Nierman WC, Søgaard-Andersen L (2011) Comparative genomic analysis of fruiting body formation in Myxococcales. Mol Biol Evol 28(2):1083–97
-
(2011)
Mol Biol Evol
, vol.28
, Issue.2
, pp. 1083-1097
-
-
Huntley, S.1
Hamann, N.2
Wegener-Feldbrügge, S.3
Treuner-Lange, A.4
Kube, M.5
Reinhardt, R.6
Klages, S.7
Müller, R.8
Ronning, C.M.9
Nierman, W.C.10
Søgaard-Andersen, L.11
-
53
-
-
50649119478
-
A bacterial ice-binding protein from the Vostok ice core
-
COI: 1:CAS:528:DC%2BD1cXhtVekt7bI, PID: 18622572
-
Raymond JA, Christner BC, Schuster SC (2008) A bacterial ice-binding protein from the Vostok ice core. Extremophiles 12(5):713–717
-
(2008)
Extremophiles
, vol.12
, Issue.5
, pp. 713-717
-
-
Raymond, J.A.1
Christner, B.C.2
Schuster, S.C.3
-
54
-
-
84906943766
-
Identification and analysis of two sequences encoding ice-binding proteins obtained from a putative bacterial symbiont of the psychrophilic Antarctic ciliate Euplotes focardii
-
Pucciarelli S, Devaraj RR, Ballarini P, Yu T, Yang G, Miceli C (2014) Identification and analysis of two sequences encoding ice-binding proteins obtained from a putative bacterial symbiont of the psychrophilic Antarctic ciliate Euplotes focardii. Antarct Sci 2:1–11
-
(2014)
Antarct Sci
, vol.2
-
-
Pucciarelli, S.1
Devaraj, R.R.2
Ballarini, P.3
Yu, T.4
Yang, G.5
Miceli, C.6
-
55
-
-
78650125178
-
Genome sequence of strain HTCC2083, a novel member of the marine clade Roseobacter
-
Kang I, Vergin KL, Oh HM, Choi A, Giovannoni SJ, Cho JC (2011) Genome sequence of strain HTCC2083, a novel member of the marine clade Roseobacter. J Bacteriol 193(1):319–20
-
(2011)
J Bacteriol
, vol.193
, Issue.1
, pp. 319-320
-
-
Kang, I.1
Vergin, K.L.2
Oh, H.M.3
Choi, A.4
Giovannoni, S.J.5
Cho, J.C.6
-
56
-
-
42549135037
-
Construction of a BAC library and mapping BAC clones to the linkage map of Barramundi, Lates calcarifer
-
Wang CM, Lo LC, Feng F, Gong P, Li J, Zhu ZY, Lin G, Yue GH (2008) Construction of a BAC library and mapping BAC clones to the linkage map of Barramundi, Lates calcarifer. BMC Genomics 25(9):139
-
(2008)
BMC Genomics
, vol.25
, Issue.9
, pp. 139
-
-
Wang, C.M.1
Lo, L.C.2
Feng, F.3
Gong, P.4
Li, J.5
Zhu, Z.Y.6
Lin, G.7
Yue, G.H.8
-
57
-
-
84862491510
-
Gene transfer agents: phage-like elements of genetic exchange
-
COI: 1:CAS:528:DC%2BC38XotlCruro%3D, PID: 22683880, Review
-
Lang AS, Zhaxybayeva O, Beatty JT (2012) Gene transfer agents: phage-like elements of genetic exchange. Nat Rev Microbiol 10(7):472–82. doi:10.1038/nrmicro2802, Review
-
(2012)
Nat Rev Microbiol
, vol.10
, Issue.7
, pp. 472-482
-
-
Lang, A.S.1
Zhaxybayeva, O.2
Beatty, J.T.3
-
58
-
-
84907876248
-
-
Ellinger A, Velimirov B: DNA-bearing membrane vesicles produced by Ahrensia kielensis and Pseudoalteromonas marina. J Basic Microbiol
-
Hagemann S, Stöger L, Kappelmann M, Hassl I, Ellinger A, Velimirov B (2013) DNA-bearing membrane vesicles produced by Ahrensia kielensis and Pseudoalteromonas marina. J Basic Microbiol. doi:10.1002/jobm.201300376
-
(2013)
Hassl
, vol.I
-
-
Hagemann, S.1
Stöger, L.2
Kappelmann, M.3
-
59
-
-
84864348723
-
-
Duodu S, Larsson P, Sjödin A, Forsman M, Colquhoun DJ (2012) The distribution of Francisella-like bacteria associated with coastal waters in Norway. Microb Ecol 64(2):370–7. PMID: 22370877
-
Duodu S, Larsson P, Sjödin A, Forsman M, Colquhoun DJ (2012) The distribution of Francisella-like bacteria associated with coastal waters in Norway. Microb Ecol 64(2):370–7. doi:10.1007/s00248-012-0023-0, PMID: 22370877
-
-
-
-
60
-
-
77949389165
-
Large direct repeats flank genomic rearrangements between a new clinical isolate of Francisella tularensis subsp. tularensis A1 and Schu S4
-
Nalbantoglu U, Sayood K, Dempsey MP, Iwen PC, Francesconi SC, Barabote RD, Xie G, Brettin TS, Hinrichs SH, Fey PD (2010) Large direct repeats flank genomic rearrangements between a new clinical isolate of Francisella tularensis subsp. tularensis A1 and Schu S4. PLoS One 5(2):e9007. doi:10.1371/journal.pone.0009007
-
(2010)
PLoS One
, vol.5
, Issue.2
, pp. e9007
-
-
Nalbantoglu, U.1
Sayood, K.2
Dempsey, M.P.3
Iwen, P.C.4
Francesconi, S.C.5
Barabote, R.D.6
Xie, G.7
Brettin, T.S.8
Hinrichs, S.H.9
Fey, P.D.10
-
61
-
-
84895067625
-
Candidatus Sonnebornia yantaiensis”, a member of candidate division OD1, as intracellular bacteria of the ciliated protist Paramecium bursaria (Ciliophora, Oligohymenophorea)
-
COI: 1:CAS:528:DC%2BC3sXhslGlsbrN, PID: 24231291
-
Gong J, Qing Y, Guo X, Warren A (2014) “Candidatus Sonnebornia yantaiensis”, a member of candidate division OD1, as intracellular bacteria of the ciliated protist Paramecium bursaria (Ciliophora, Oligohymenophorea). Syst Appl Microbiol 37(1):35–41
-
(2014)
Syst Appl Microbiol
, vol.37
, Issue.1
, pp. 35-41
-
-
Gong, J.1
Qing, Y.2
Guo, X.3
Warren, A.4
-
62
-
-
84888360750
-
Rediscovering the genus Lyticum, multiflagellated symbionts of the order Rickettsiales
-
PID: 24264310
-
Boscaro V, Schrallhammer M, Benken KA, Krenek S, Szokoli F, Berendonk TU, Schweikert M, Verni F, Sabaneyeva EV, Petroni G (2013) Rediscovering the genus Lyticum, multiflagellated symbionts of the order Rickettsiales. Sci Rep 3:3305. doi:10.1038/srep03305
-
(2013)
Sci Rep
, vol.3
, pp. 3305
-
-
Boscaro, V.1
Schrallhammer, M.2
Benken, K.A.3
Krenek, S.4
Szokoli, F.5
Berendonk, T.U.6
Schweikert, M.7
Verni, F.8
Sabaneyeva, E.V.9
Petroni, G.10
-
63
-
-
84882667063
-
‘Candidatus Megaira polyxenophila’ gen. nov., sp. nov.: considerations on evolutionary history, host range and shift of early divergent rickettsiae
-
COI: 1:CAS:528:DC%2BC3sXhtlKmu7bO, PID: 23977321
-
Schrallhammer M, Ferrantini F, Vannini C, Galati S, Schweikert M, Görtz HD, Verni F, Petroni G (2013) ‘Candidatus Megaira polyxenophila’ gen. nov., sp. nov.: considerations on evolutionary history, host range and shift of early divergent rickettsiae. PLoS ONE 8:e72581. doi:10.1371/journal.pone.0072581
-
(2013)
PLoS ONE
, vol.8
, pp. e72581
-
-
Schrallhammer, M.1
Ferrantini, F.2
Vannini, C.3
Galati, S.4
Schweikert, M.5
Görtz, H.D.6
Verni, F.7
Petroni, G.8
-
64
-
-
84859003246
-
Frequency and biodiversity of symbionts in representatives of the main classes of Ciliophora
-
PID: 22425549
-
Fokin SI (2012) Frequency and biodiversity of symbionts in representatives of the main classes of Ciliophora. Eur J Protistol 48:138–148
-
(2012)
Eur J Protistol
, vol.48
, pp. 138-148
-
-
Fokin, S.I.1
-
65
-
-
0037230008
-
Survival and growth of Francisella tularensis in Acanthamoeba castellanii
-
Abd H, Johansson T, Golovliov I, Sandstrom G, Forsman M (2003) Survival and growth of Francisella tularensis in Acanthamoeba castellanii. Appl Environ Microbiol 69:600–606
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 600-606
-
-
Abd, H.1
Johansson, T.2
Golovliov, I.3
Sandstrom, G.4
Forsman, M.5
-
66
-
-
57449089752
-
Influence of nutrient status and grazing pressure on the fate of Francisella tularensis in lakewater
-
COI: 1:CAS:528:DC%2BD1MXns1Sjtw%3D%3D, PID: 19120459
-
Thelaus J, Andersson A, Mathisen P, Forslund AL, Noppa L, Forsman M (2009) Influence of nutrient status and grazing pressure on the fate of Francisella tularensis in lakewater. FEMS Microbiol Ecol 67:69–80
-
(2009)
FEMS Microbiol Ecol
, vol.67
, pp. 69-80
-
-
Thelaus, J.1
Andersson, A.2
Mathisen, P.3
Forslund, A.L.4
Noppa, L.5
Forsman, M.6
-
67
-
-
84877715610
-
Water mass and depth determine the distribution and diversity of Rhodobacterales in an Arctic marine system
-
COI: 1:CAS:528:DC%2BC3sXpsVeit7s%3D, PID: 23374017
-
Fu Y, Keats KF, Rivkin RB, Lang AS (2013) Water mass and depth determine the distribution and diversity of Rhodobacterales in an Arctic marine system. FEMS Microbiol Ecol 84(3):564–76. doi:10.1111/1574-6941.12085
-
(2013)
FEMS Microbiol Ecol
, vol.84
, Issue.3
, pp. 564-576
-
-
Fu, Y.1
Keats, K.F.2
Rivkin, R.B.3
Lang, A.S.4
-
68
-
-
3042849253
-
Biased biological functions of horizontally transferred genes in prokaryotic genomes
-
COI: 1:CAS:528:DC%2BD2cXlt1Cku7s%3D, PID: 15208628
-
Nakamura Y, Itoh T, Matsuda H, Gojobori T (2004) Biased biological functions of horizontally transferred genes in prokaryotic genomes. Nat Genet 36(7):760–6
-
(2004)
Nat Genet
, vol.36
, Issue.7
, pp. 760-766
-
-
Nakamura, Y.1
Itoh, T.2
Matsuda, H.3
Gojobori, T.4
-
69
-
-
77957355684
-
High frequency of horizontal gene transfer in the oceans
-
COI: 1:CAS:528:DC%2BC3cXht1WmtbjK, PID: 20929803
-
McDaniel LD, Young E, Delaney J, Ruhnau F, Ritchie KB, Paul JH (2010) High frequency of horizontal gene transfer in the oceans. Science 330(6000):50. doi:10.1126/science.1192243
-
(2010)
Science
, vol.330
, Issue.6000
, pp. 50
-
-
McDaniel, L.D.1
Young, E.2
Delaney, J.3
Ruhnau, F.4
Ritchie, K.B.5
Paul, J.H.6
-
70
-
-
79960961566
-
Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches
-
COI: 1:CAS:528:DC%2BC3MXhtVyjsr%2FN, PID: 21711367
-
Wiedenbeck J, Cohan FM (2011) Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches. FEMS Microbiol Rev 35(5):957–76. doi:10.1111/j.1574-6976.2011.00292.x
-
(2011)
FEMS Microbiol Rev
, vol.35
, Issue.5
, pp. 957-976
-
-
Wiedenbeck, J.1
Cohan, F.M.2
-
71
-
-
84868534630
-
Presidential address. Transposable elements, epigenetics, and genome evolution
-
COI: 1:CAS:528:DC%2BC38Xhslagt7%2FO, PID: 23145453
-
Fedoroff NV (2012) Presidential address. Transposable elements, epigenetics, and genome evolution. Science 338(6108):758–767
-
(2012)
Science
, vol.338
, Issue.6108
, pp. 758-767
-
-
Fedoroff, N.V.1
-
72
-
-
33749522239
-
Genetics: junk DNA as an evolutionary force
-
Biémont C, Vieira C (2006) Genetics: junk DNA as an evolutionary force. Nature 5;443(7111):521-524
-
(2006)
Nature 5;443(7111)
, pp. 521-524
-
-
Biémont, C.1
Vieira, C.2
-
73
-
-
33750714399
-
Repetitive DNA elements as mediators of genomic change in response to environmental cues
-
PID: 16893475
-
Schmidt AL, Anderson LM (2006) Repetitive DNA elements as mediators of genomic change in response to environmental cues. Biol Rev Camb Philos Soc 81(4):531–43
-
(2006)
Biol Rev Camb Philos Soc
, vol.81
, Issue.4
, pp. 531-543
-
-
Schmidt, A.L.1
Anderson, L.M.2
-
74
-
-
84890522036
-
Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis
-
PID: 23170223
-
Oliver KR, Greene WK (2012) Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis. Ecol Evol 2(11):2912–33. doi:10.1002/ece3.400
-
(2012)
Ecol Evol
, vol.2
, Issue.11
, pp. 2912-2933
-
-
Oliver, K.R.1
Greene, W.K.2
-
75
-
-
79952706183
-
The struggle for life of the genome’s selfish architects
-
Review
-
Hua-Van A, le Rouzic A, Boutin TS, Filée J, Capy P (2011) The struggle for life of the genome’s selfish architects. Biol Direct 17(6):19. doi:10.1186/1745-6150-6-19, Review
-
(2011)
Biol Direct
, vol.17
, Issue.6
, pp. 19
-
-
Hua-Van, A.1
le Rouzic, A.2
Boutin, T.S.3
Filée, J.4
Capy, P.5
-
76
-
-
84985059828
-
Freshwater Euplotes species with 9 type I cirrus pattern depend upon endosymbionts
-
Heckmann K, ten Hagen R, Görtz HD (1983) Freshwater Euplotes species with 9 type I cirrus pattern depend upon endosymbionts. J Protozool 30:284–289
-
(1983)
J Protozool
, vol.30
, pp. 284-289
-
-
Heckmann, K.1
ten Hagen, R.2
Görtz, H.D.3
-
77
-
-
21844447878
-
Polynucleobacter bacteria in the brackish-water species Euplotes harpa (Ciliata, Hypotrichia)
-
COI: 1:CAS:528:DC%2BD2MXks1Wmu7s%3D
-
Vannini C, Petroni G, Verni F, Rosati G (2005) Polynucleobacter bacteria in the brackish-water species Euplotes harpa (Ciliata, Hypotrichia). J Eukariot Microbiol 52:116–122
-
(2005)
J Eukariot Microbiol
, vol.52
, pp. 116-122
-
-
Vannini, C.1
Petroni, G.2
Verni, F.3
Rosati, G.4
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