Metagenome sequencing of prokaryotic microbiota collected from Byron Glacier, Alaska

Genome Announcements

Volumn 1, Issue 2, 2013, Pages

  Choudhari, Sulbha ^a   Smith, Sean ^a   Owens, Sarah ^b,c   Gilbert, Jack A ^b,c   Shain, Daniel H ^a   Dial, Roman J ^d   Grigoriev, Andrey ^a  

^a RUTGERS UNIVERSITY   (United States)

^b ARGONNE NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF CHICAGO   (United States)

^d ALASKA PACIFIC UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84898429033     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00099-13     Document Type: Article

References (10)

1. Miteva VI, Sheridan PP, Brenchley JE. 2004. Phylogenetic and physiological diversity of microorganisms isolated from a deep Greenland glacier ice core. Appl. Environ. Microbiol. 70:202-213.
2. Willerslev E, Hansen AJ, Poinar HN. 2004. Isolation of nucleic acids and cultures from fossil ice and permafrost. Trends Ecol. Evol. 19:141-147.
3. Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Desai N, Eisen JA, Evers D, Field D. 2010. Meeting report: the terabase metagenomics workshop and the vision of an Earth Microbiome Project. Stand. Genomic Sci. 3:243-248.
4. Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M, Gormley N, Gilbert JA, Smith G, Knight R. 2012. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6:1621-1624.
5. Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing andcomparing microbial communities. Appl. Environ. Microbiol. 75:7537-7541.
6. Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM. 2009. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37:D141-D145.
7. Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO. 2007. Silva: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188-7196.
8. Kol E. 1968. Kryobiologie: biologie und limnologie des schnees und eises.1. Kryovegetation, vol 24. E. Schweizerbart'sche Verlagsbuchhandlung (Nägele u. Obermiller), Stuttgart, Germany.
9. Simon C, Wiezer A, Strittmatter AW, Daniel R. 2009. Phylogenetic diversity and metabolic potential revealed in a glacier ice metagenome. Appl. Environ. Microbiol. 75:7519-7526.
10. Cameron KA, Hodson AJ, Osborn AM. 2012. Structure and diversity of bacterial, eukaryotic and archaeal communities in glacial cryoconite holes from the Arctic and the Antarctic. FEMS Microbiol. Ecol. 82: 254-267.