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Volumn 10, Issue 6, 2015, Pages

Bacterial composition of the human upper gastrointestinal tract microbiome is dynamic and associated with genomic instability in a Barrett's esophagus cohort

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGED; ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BARRETT ESOPHAGUS; CARDIA; CLINICAL ARTICLE; COHORT ANALYSIS; CONTROLLED STUDY; DISEASE SEVERITY; DNA ISOLATION; ESOPHAGUS BIOPSY; FEMALE; GENE AMPLIFICATION; GENOMIC INSTABILITY; HELICOBACTER INFECTION; HUMAN; HUMAN TISSUE; MALE; MICROBIAL COMMUNITY; MICROBIOME; MIDDLE AGED; NONHUMAN; OPEN READING FRAME; POPULATION ABUNDANCE; PREVOTELLA; PYROSEQUENCING; SPECIES COMPOSITION; SPECIES DIVERSITY; STOMACH ANTRUM; STREPTOCOCCUS; TAXONOMY; UPPER GASTROINTESTINAL TRACT; VERY ELDERLY; ADENOCARCINOMA; BACTERIUM; BIODIVERSITY; CLASSIFICATION; COMPLICATION; DISEASE PREDISPOSITION; ESOPHAGEAL NEOPLASMS; GENETICS; INCIDENCE; METABOLISM; METAGENOME; MICROBIOLOGY; MICROFLORA; MICROVILLUS; MUCOSA; PATHOLOGY; PHYLOGENY; QUANTITATIVE TRAIT; RISK FACTOR; STOMACH; WAIST HIP RATIO;

EID: 84936887183     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0129055     Document Type: Article
Times cited : (104)

References (57)
  • 1
    • 51049091878 scopus 로고    scopus 로고
    • Incidence of adenocarcinoma of the esophagus among white Americans by sex, stage, and age
    • PMID: 18695138
    • Brown LM, Devesa SS, Chow W-H (2008) Incidence of adenocarcinoma of the esophagus among white Americans by sex, stage, and age. J. Natl. Cancer Inst. 100: 1184-1187. doi: 10.1093/jnci/djn211 PMID: 18695138
    • (2008) J. Natl. Cancer Inst. , vol.100 , pp. 1184-1187
    • Brown, L.M.1    Devesa, S.S.2    Chow, W.-H.3
  • 2
    • 51249115618 scopus 로고    scopus 로고
    • Physiological and molecular analysis of acid loading mechanisms in squamous and columnar-lined esophagus
    • PMID: 18840137
    • Lao-Sirieix P, Corovic A, Jankowski J, Lowe A, Triadafilopoulos G, Fitzgerald RC. (2008) Physiological and molecular analysis of acid loading mechanisms in squamous and columnar-lined esophagus. Dis. Esophagus 21: 529-538. doi: 10.1111/j.1442-2050.2007.00807.x PMID: 18840137
    • (2008) Dis. Esophagus , vol.21 , pp. 529-538
    • Lao-Sirieix, P.1    Corovic, A.2    Jankowski, J.3    Lowe, A.4    Triadafilopoulos, G.5    Fitzgerald, R.C.6
  • 3
    • 78049354889 scopus 로고    scopus 로고
    • Helicobacter pylori and gastric cancer: Factors that modulate disease risk
    • PMID: 20930071
    • Wroblewski LE, Peek RM, Wilson KT (2010) Helicobacter pylori and gastric cancer: factors that modulate disease risk. Clin. Microbiol. Rev. 23: 713-739. doi: 10.1128/CMR.00011-10 PMID: 20930071
    • (2010) Clin. Microbiol. Rev. , vol.23 , pp. 713-739
    • Wroblewski, L.E.1    Peek, R.M.2    Wilson, K.T.3
  • 4
    • 17144440127 scopus 로고    scopus 로고
    • An inverse relation between cagA+ strains of Helicobacter pylori infection and risk of esophageal and gastric cardia adenocarcinoma
    • PMID: 9485003
    • Chow WH, Blaser MJ, Blot WJ, Gammon MD, Vaughan TL, Risch HA, et al. (1998) An inverse relation between cagA+ strains of Helicobacter pylori infection and risk of esophageal and gastric cardia adenocarcinoma. Cancer Res. 58: 588-590. PMID: 9485003
    • (1998) Cancer Res. , vol.58 , pp. 588-590
    • Chow, W.H.1    Blaser, M.J.2    Blot, W.J.3    Gammon, M.D.4    Vaughan, T.L.5    Risch, H.A.6
  • 5
    • 44149084978 scopus 로고    scopus 로고
    • Relationship between Helicobacter pylori infection and gastric atrophy and the stages of the oesophageal inflammation, metaplasia, adenocarcinoma sequence: Results from the FINBAR case-control study
    • PMID: 18025067
    • Anderson LA, Murphy SJ, Johnston BT, Watson RGP, Ferguson HR, Bamford KB, et al. (2008) Relationship between Helicobacter pylori infection and gastric atrophy and the stages of the oesophageal inflammation, metaplasia, adenocarcinoma sequence: results from the FINBAR case-control study. Gut 57: 734-739. doi: 10.1136/gut.2007.132662 PMID: 18025067
    • (2008) Gut , vol.57 , pp. 734-739
    • Anderson, L.A.1    Murphy, S.J.2    Johnston, B.T.3    Watson, R.G.P.4    Ferguson, H.R.5    Bamford, K.B.6
  • 6
    • 0344628832 scopus 로고    scopus 로고
    • Screening for Barrett's esophagus in colonoscopy patients with and without heartburn
    • PMID: 14724819
    • Rex DK, Cummings OW, Shaw M, Cumings MD, Wong RKH, Vasudeva RS, et al. (2003) Screening for Barrett's esophagus in colonoscopy patients with and without heartburn. Gastroenterology 125: 1670-1677. PMID: 14724819
    • (2003) Gastroenterology , vol.125 , pp. 1670-1677
    • Rex, D.K.1    Cummings, O.W.2    Shaw, M.3    Cumings, M.D.4    Wong, R.K.H.5    Vasudeva, R.S.6
  • 7
    • 44149114066 scopus 로고    scopus 로고
    • Helicobacter pylori infection and the risk of Barrett's oesophagus: A community-based study
    • PMID: 17895354
    • Corley DA, Kubo A, Levin TR, Block G, Habel L, Zhao W, et al. (2008) Helicobacter pylori infection and the risk of Barrett's oesophagus: a community-based study. Gut 57: 727-733. doi: 10.1136/gut.2007.132068 PMID: 17895354
    • (2008) Gut , vol.57 , pp. 727-733
    • Corley, D.A.1    Kubo, A.2    Levin, T.R.3    Block, G.4    Habel, L.5    Zhao, W.6
  • 8
    • 0027428123 scopus 로고
    • Epidemiology of, and risk factors for, Helicobacter pylori infection among 3194 asymptomatic subjects in 17 populations
    • PMID: 8282253
    • The EUROGAST Study Group. Epidemiology of, and risk factors for, Helicobacter pylori infection among 3194 asymptomatic subjects in 17 populations. (1993) Gut 34: 1672-1676. PMID: 8282253
    • (1993) Gut , vol.34 , pp. 1672-1676
  • 11
    • 50949131523 scopus 로고    scopus 로고
    • Comparative analysis of human gut microbiota by barcoded pyrosequencing
    • PMID: 18665274
    • Andersson AF, Lindberg M, Jakobsson H, Ba¨ckhed F, Nyrén P, Engstrand L. (2008) Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS ONE 3: e2836. doi: 10.1371/journal.pone.0002836 PMID: 18665274
    • (2008) PLoS ONE , vol.3
    • Andersson, A.F.1    Lindberg, M.2    Jakobsson, H.3    Ba¨ckhed, F.4    Nyrén, P.5    Engstrand, L.6
  • 13
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • PMID: 19892944
    • Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R. (2009) Bacterial community variation in human body habitats across space and time. Science 326: 1694-1697. doi: 10.1126/science.1177486 PMID: 19892944
    • (2009) Science , vol.326 , pp. 1694-1697
    • Costello, E.K.1    Lauber, C.L.2    Hamady, M.3    Fierer, N.4    Gordon, J.I.5    Knight, R.6
  • 15
    • 67650951420 scopus 로고    scopus 로고
    • Inflammation and intestinal metaplasia of the distal esophagus are associated with alterations in the microbiome
    • PMID: 19394334
    • Yang L, Lu X, Nossa CW, Francois F, Peek RM, Pei Z. (2009) Inflammation and intestinal metaplasia of the distal esophagus are associated with alterations in the microbiome. Gastroenterology 137: 588-597. doi: 10.1053/j.gastro.2009.04.046 PMID: 19394334
    • (2009) Gastroenterology , vol.137 , pp. 588-597
    • Yang, L.1    Lu, X.2    Nossa, C.W.3    Francois, F.4    Peek, R.M.5    Pei, Z.6
  • 16
    • 84906944887 scopus 로고    scopus 로고
    • Gastric microbiota is altered in oesophagitis and Barrett's oesophagus and further modified by proton pump inhibitors
    • Amir I, Konikoff FM, Oppenheim M, Gophna U, Half EE (2013) Gastric microbiota is altered in oesophagitis and Barrett's oesophagus and further modified by proton pump inhibitors. Environ. Microbiol. doi: 10.1111/1462-2920.12285
    • (2013) Environ. Microbiol.
    • Amir, I.1    Konikoff, F.M.2    Oppenheim, M.3    Gophna, U.4    Half, E.E.5
  • 17
    • 84871851757 scopus 로고    scopus 로고
    • The role of tobacco, alcohol, and obesity in neoplastic progression to esophageal adenocarcinoma: A prospective study of Barrett's esophagus
    • PMID: 23300966
    • Hardikar S, Onstad L, Blount PL, Odze RD, Reid BJ, Vaughan TL. (2013) The role of tobacco, alcohol, and obesity in neoplastic progression to esophageal adenocarcinoma: a prospective study of Barrett's esophagus. PLoS ONE 8: e52192. doi: 10.1371/journal.pone.0052192 PMID: 23300966
    • (2013) PLoS ONE , vol.8
    • Hardikar, S.1    Onstad, L.2    Blount, P.L.3    Odze, R.D.4    Reid, B.J.5    Vaughan, T.L.6
  • 18
    • 84885751662 scopus 로고    scopus 로고
    • Central adiposity is associated with increased risk of esophageal inflammation, metaplasia, and adenocarcinoma: A systematic review and meta-analysis
    • PMID: 23707461
    • Singh S, Sharma AN, Murad MH, Buttar NS, El-Serag HB, Katzka DA, et al. (2013) Central adiposity is associated with increased risk of esophageal inflammation, metaplasia, and adenocarcinoma: a systematic review and meta-analysis. Clin. Gastroenterol. Hepatol. 11: 1399-1412.e7. doi: 10.1016/j.cgh.2013.05.009 PMID: 23707461
    • (2013) Clin. Gastroenterol. Hepatol. , vol.11
    • Singh, S.1    Sharma, A.N.2    Murad, M.H.3    Buttar, N.S.4    El-Serag, H.B.5    Katzka, D.A.6
  • 19
    • 84874345657 scopus 로고    scopus 로고
    • Hiatal hernia and the risk of Barrett's esophagus
    • PMID: 22694245
    • Andrici J, Tio M, Cox MR, Eslick GD (2013) Hiatal hernia and the risk of Barrett's esophagus. J. Gastroenterol. Hepatol. 28: 415-431. doi: 10.1111/j.1440-1746.2012.07199.x PMID: 22694245
    • (2013) J. Gastroenterol. Hepatol. , vol.28 , pp. 415-431
    • Andrici, J.1    Tio, M.2    Cox, M.R.3    Eslick, G.D.4
  • 20
    • 84885867786 scopus 로고    scopus 로고
    • Association between length of Barrett's esophagus and risk of high-grade dysplasia or adenocarcinoma in patients without dysplasia
    • PMID: 23707463
    • Anaparthy R, Gaddam S, Kanakadandi V, Alsop BR, Gupta N, Higbee AD et al. (2013) Association between length of Barrett's esophagus and risk of high-grade dysplasia or adenocarcinoma in patients without dysplasia. Clin. Gastroenterol. Hepatol. 11: 1430-1436. doi: 10.1016/j.cgh.2013.05.007 PMID: 23707463
    • (2013) Clin. Gastroenterol. Hepatol. , vol.11 , pp. 1430-1436
    • Anaparthy, R.1    Gaddam, S.2    Kanakadandi, V.3    Alsop, B.R.4    Gupta, N.5    Higbee, A.D.6
  • 21
    • 0026518795 scopus 로고
    • Flow-cytometric and histological progression to malignancy in Barrett's esophagus: Prospective endoscopic surveillance of a cohort
    • PMID: 1551528
    • Reid BJ, Blount PL, Rubin CE, Levine DS, Haggitt RC, Rabinovitch PS (1992) Flow-cytometric and histological progression to malignancy in Barrett's esophagus: prospective endoscopic surveillance of a cohort. Gastroenterology 102: 1212-1219. PMID: 1551528
    • (1992) Gastroenterology , vol.102 , pp. 1212-1219
    • Reid, B.J.1    Blount, P.L.2    Rubin, C.E.3    Levine, D.S.4    Haggitt, R.C.5    Rabinovitch, P.S.6
  • 22
    • 0036370334 scopus 로고    scopus 로고
    • Helicobacter pylori and gastrointestinal tract adenocarcinomas
    • PMID: 11902583
    • Peek RM, Blaser MJ (2002) Helicobacter pylori and gastrointestinal tract adenocarcinomas. Nat. Rev. Cancer 2: 28-37. doi: 10.1038/nrc703 PMID: 11902583
    • (2002) Nat. Rev. Cancer , vol.2 , pp. 28-37
    • Peek, R.M.1    Blaser, M.J.2
  • 23
    • 0037169076 scopus 로고    scopus 로고
    • SHP-2 tyrosine phosphatase as an intracellular target of Helicobacter pylori CagA protein
    • PMID: 11743164
    • Higashi H, Tsutsumi R, Muto S, Sugiyama T, Azuma T, Asaka M, et al. (2002) SHP-2 tyrosine phosphatase as an intracellular target of Helicobacter pylori CagA protein. Science 295: 683-686. doi: 10.1126/science.1067147 PMID: 11743164
    • (2002) Science , vol.295 , pp. 683-686
    • Higashi, H.1    Tsutsumi, R.2    Muto, S.3    Sugiyama, T.4    Azuma, T.5    Asaka, M.6
  • 24
    • 84874981081 scopus 로고    scopus 로고
    • Characterization of bacterial biota in the distal esophagus of Japanese patients with reflux esophagitis and Barrett's esophagus
    • PMID: 23496929
    • Liu N, Ando T, Ishiguro K, Maeda O, Watanabe O, Funasaka K, et al. (2013) Characterization of bacterial biota in the distal esophagus of Japanese patients with reflux esophagitis and Barrett's esophagus. BMC Infect. Dis. 13: 130. doi: 10.1186/1471-2334-13-130 PMID: 23496929
    • (2013) BMC Infect. Dis. , vol.13 , pp. 130
    • Liu, N.1    Ando, T.2    Ishiguro, K.3    Maeda, O.4    Watanabe, O.5    Funasaka, K.6
  • 25
    • 84874099238 scopus 로고    scopus 로고
    • SHP2 is overexpressed and inhibits pSTAT1-mediated APM component expression, T-cell attracting chemokine secretion, and CTL recognition in head and neck cancer cells
    • PMID: 23363816
    • Leibowitz MS, Srivastava RM, Andrade Filho PA, Egloff AM, Wang L, Seethala RR, et al. (2013) SHP2 is overexpressed and inhibits pSTAT1-mediated APM component expression, T-cell attracting chemokine secretion, and CTL recognition in head and neck cancer cells. Clin. Cancer Res. 19: 798-808. doi: 10.1158/1078-0432.CCR-12-1517 PMID: 23363816
    • (2013) Clin. Cancer Res. , vol.19 , pp. 798-808
    • Leibowitz, M.S.1    Srivastava, R.M.2    Andrade Filho, P.A.3    Egloff, A.M.4    Wang, L.5    Seethala, R.R.6
  • 26
    • 84862162269 scopus 로고    scopus 로고
    • Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples
    • PMID: 22698087
    • Segata N, Haake SK, Mannon P, Lemon KP, Waldron L, Gevers D, et al. (2012) Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples. Genome Biol. 13: R42. doi: 10.1186/gb-2012-13-6-r42 PMID: 22698087
    • (2012) Genome Biol. , vol.13 , pp. R42
    • Segata, N.1    Haake, S.K.2    Mannon, P.3    Lemon, K.P.4    Waldron, L.5    Gevers, D.6
  • 27
    • 84883478660 scopus 로고    scopus 로고
    • Gut microbiota from twins discordant for obesity modulate metabolism in mice
    • PMID: 24009397
    • Ridaura VK, Faith JJ, Rey FE, Cheng J, Duncan AE, Kau AL, et al. (2013) Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science 341: 1241214. doi: 10.1126/science.1241214 PMID: 24009397
    • (2013) Science , vol.341
    • Ridaura, V.K.1    Faith, J.J.2    Rey, F.E.3    Cheng, J.4    Duncan, A.E.5    Kau, A.L.6
  • 28
    • 38449088143 scopus 로고    scopus 로고
    • Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
    • PMID: 17916580
    • Kurokawa K, Itoh T, Kuwahara T, Oshima K, Toh H, Toyoda A, et al. (2007) Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res. 14: 169-181. doi: 10.1093/dnares/dsm018 PMID: 17916580
    • (2007) DNA Res. , vol.14 , pp. 169-181
    • Kurokawa, K.1    Itoh, T.2    Kuwahara, T.3    Oshima, K.4    Toh, H.5    Toyoda, A.6
  • 29
    • 57749205957 scopus 로고    scopus 로고
    • Intra-individual diversity and similarity of salivary and faecal microbiota
    • PMID: 19018030
    • Maukonen J, Ma¨ttö J, Suihko M-L, Saarela M (2008) Intra-individual diversity and similarity of salivary and faecal microbiota. J. Med. Microbiol. 57: 1560-1568. doi: 10.1099/jmm.0.47352-0 PMID: 19018030
    • (2008) J. Med. Microbiol. , vol.57 , pp. 1560-1568
    • Maukonen, J.1    Ma¨ttö, J.2    Suihko, M.-L.3    Saarela, M.4
  • 31
    • 80053618114 scopus 로고    scopus 로고
    • Linking long-term dietary patterns with gut microbial enterotypes
    • PMID: 21885731
    • Wu GD, Chen J, Hoffmann C, Bittinger K, Chen Y-Y, Keilbaugh SA, et al. (2011) Linking long-term dietary patterns with gut microbial enterotypes. Science 334: 105-108. doi: 10.1126/science.1208344 PMID: 21885731
    • (2011) Science , vol.334 , pp. 105-108
    • Wu, G.D.1    Chen, J.2    Hoffmann, C.3    Bittinger, K.4    Chen, Y.-Y.5    Keilbaugh, S.A.6
  • 32
    • 84862173705 scopus 로고    scopus 로고
    • A core human microbiome as viewed through 16S rRNA sequence clusters
    • PMID: 22719824
    • Huse SM, Ye Y, Zhou Y, Fodor AA (2012) A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS ONE 7: e34242. doi: 10.1371/journal.pone.0034242 PMID: 22719824
    • (2012) PLoS ONE , vol.7
    • Huse, S.M.1    Ye, Y.2    Zhou, Y.3    Fodor, A.A.4
  • 33
    • 84880471652 scopus 로고    scopus 로고
    • Long-term temporal analysis of the human fecal microbiota revealed a stable core of dominant bacterial species
    • PMID: 23874976
    • Martínez I, Muller CE, Walter J (2013) Long-term temporal analysis of the human fecal microbiota revealed a stable core of dominant bacterial species. PLoS ONE 8: e69621. doi: 10.1371/journal.pone.0069621 PMID: 23874976
    • (2013) PLoS ONE , vol.8
    • Martínez, I.1    Muller, C.E.2    Walter, J.3
  • 35
    • 84877091328 scopus 로고    scopus 로고
    • Analyses of the stability and core taxonomic memberships of the human microbiome
    • PMID: 23671663
    • Li K, Bihan M, Methé BA (2013) Analyses of the stability and core taxonomic memberships of the human microbiome. PLoS ONE 8: e63139. doi: 10.1371/journal.pone.0063139 PMID: 23671663
    • (2013) PLoS ONE , vol.8
    • Li, K.1    Bihan, M.2    Methé, B.A.3
  • 36
    • 84864722033 scopus 로고    scopus 로고
    • Gut microbiota composition correlates with diet and health in the elderly
    • PMID: 22797518
    • Claesson MJ, Jeffery IB, Conde S, Power SE, O'Connor EM, Cusack S, et al. (2012) Gut microbiota composition correlates with diet and health in the elderly. Nature 488: 178-184. doi: 10.1038/nature11319 PMID: 22797518
    • (2012) Nature , vol.488 , pp. 178-184
    • Claesson, M.J.1    Jeffery, I.B.2    Conde, S.3    Power, S.E.4    O'Connor, E.M.5    Cusack, S.6
  • 38
    • 79952757721 scopus 로고    scopus 로고
    • Composition, variability, and temporal stability of the intestinal microbiota of the elderly
    • PMID: 20571116
    • Claesson MJ, Cusack S, O'Sullivan O, Greene-Diniz R, de Weerd H, Flannery E et al. (2011) Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc. Natl. Acad. Sci. U. S.A. 108 Suppl 1: 4586-4591. doi: 10.1073/pnas.1000097107 PMID: 20571116
    • (2011) Proc. Natl. Acad. Sci. U. S.A. , vol.108 , pp. 4586-4591
    • Claesson, M.J.1    Cusack, S.2    O'Sullivan, O.3    Greene-Diniz, R.4    De Weerd, H.5    Flannery, E.6
  • 39
    • 84899925360 scopus 로고    scopus 로고
    • Exercise prevents weight gain and alters the gut microbiota in a mouse model of high fat diet-induced obesity
    • PMID: 24670791
    • Evans CC, LePard KJ, Kwak JW, Stancukas MC, Laskowski S, Dougherty J, et al. (2014) Exercise prevents weight gain and alters the gut microbiota in a mouse model of high fat diet-induced obesity. PLoS ONE 9: e92193. doi: 10.1371/journal.pone.0092193 PMID: 24670791
    • (2014) PLoS ONE , vol.9
    • Evans, C.C.1    LePard, K.J.2    Kwak, J.W.3    Stancukas, M.C.4    Laskowski, S.5    Dougherty, J.6
  • 41
    • 77950669604 scopus 로고    scopus 로고
    • The effect of diet on the human gut microbiome: A metagenomic analysis in humanized gnotobiotic mice
    • PMID: 20368178
    • Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI. (2009) The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med 1: 6ra14. doi: 10.1126/scitranslmed.3000322 PMID: 20368178
    • (2009) Sci Transl Med , vol.1
    • Turnbaugh, P.J.1    Ridaura, V.K.2    Faith, J.J.3    Rey, F.E.4    Knight, R.5    Gordon, J.I.6
  • 42
    • 33846542071 scopus 로고    scopus 로고
    • Mechanisms underlying the resistance to diet-induced obesity in germ-free mice
    • PMID: 17210919
    • Ba¨ckhed F, Manchester JK, Semenkovich CF, Gordon JI (2007) Mechanisms underlying the resistance to diet-induced obesity in germ-free mice. Proc. Natl. Acad. Sci. U.S.A. 104: 979-984. doi: 10.1073/pnas.0605374104 PMID: 17210919
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 979-984
    • Ba¨ckhed, F.1    Manchester, J.K.2    Semenkovich, C.F.3    Gordon, J.I.4
  • 43
    • 0033915683 scopus 로고    scopus 로고
    • Predictors of progression to cancer in Barrett's esophagus: Baseline histology and flow cytometry identify low- and high-risk patient subsets
    • PMID: 10925966
    • Reid BJ, Levine DS, Longton G, Blount PL, Rabinovitch PS (2000) Predictors of progression to cancer in Barrett's esophagus: baseline histology and flow cytometry identify low- and high-risk patient subsets. Am. J. Gastroenterol. 95: 1669-1676. doi: 10.1111/j.1572-0241.2000.02196.x PMID: 10925966
    • (2000) Am. J. Gastroenterol. , vol.95 , pp. 1669-1676
    • Reid, B.J.1    Levine, D.S.2    Longton, G.3    Blount, P.L.4    Rabinovitch, P.S.5
  • 44
    • 0035180041 scopus 로고    scopus 로고
    • Predictors of progression in Barrett's esophagus III: Baseline flow cytometric variables
    • PMID: 11721752
    • Rabinovitch PS, Longton G, Blount PL, Levine DS, Reid BJ (2001) Predictors of progression in Barrett's esophagus III: baseline flow cytometric variables. Am. J. Gastroenterol. 96: 3071-3083. doi: 10.1111/j.1572-0241.2001.05261.x PMID: 11721752
    • (2001) Am. J. Gastroenterol. , vol.96 , pp. 3071-3083
    • Rabinovitch, P.S.1    Longton, G.2    Blount, P.L.3    Levine, D.S.4    Reid, B.J.5
  • 45
    • 0034064819 scopus 로고    scopus 로고
    • Safety of a systematic endoscopic biopsy protocol in patients with Barrett's esophagus
    • PMID: 10811320
    • Levine DS, Blount PL, Rudolph RE, Reid BJ (2000) Safety of a systematic endoscopic biopsy protocol in patients with Barrett's esophagus. Am. J. Gastroenterol. 95: 1152-1157. doi: 10.1111/j.1572-0241.2000.02002.x PMID: 10811320
    • (2000) Am. J. Gastroenterol. , vol.95 , pp. 1152-1157
    • Levine, D.S.1    Blount, P.L.2    Rudolph, R.E.3    Reid, B.J.4
  • 46
    • 77956578390 scopus 로고    scopus 로고
    • Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome
    • PMID: 20806429
    • Nossa CW, Oberdorf WE, Yang L, Aas JA, Paster BJ, Desantis TZ, et al. (2010) Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome. World J. Gastroenterol. 16: 4135-4144. PMID: 20806429
    • (2010) World J. Gastroenterol. , vol.16 , pp. 4135-4144
    • Nossa, C.W.1    Oberdorf, W.E.2    Yang, L.3    Aas, J.A.4    Paster, B.J.5    Desantis, T.Z.6
  • 48
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • PMID: 18264105
    • Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R (2008) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat. Methods 5: 235-237. doi: 10.1038/nmeth.1184 PMID: 18264105
    • (2008) Nat. Methods , vol.5 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.J.4    Knight, R.5
  • 49
    • 77958610660 scopus 로고    scopus 로고
    • pplacer: Linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
    • PMID: 21034504
    • Matsen FA, Kodner RB, Armbrust EV (2010) pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC Bioinformatics 11: 538. doi: 10.1186/1471-2105-11-538 PMID: 21034504
    • (2010) BMC Bioinformatics , vol.11 , pp. 538
    • Matsen, F.A.1    Kodner, R.B.2    Armbrust, E.V.3
  • 50
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • PMID: 17586664
    • Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73: 5261-5267. doi: 10.1128/AEM.00062-07 PMID: 17586664
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 51
    • 84861183270 scopus 로고    scopus 로고
    • The phylogenetic Kantorovich-Rubinstein metric for environmental sequence samples
    • PMID: 22844205
    • Evans SN, Matsen FA (2012) The phylogenetic Kantorovich-Rubinstein metric for environmental sequence samples. J R Stat Soc Series B Stat Methodol 74: 569-592. doi: 10.1111/j.1467-9868.2011.01018.x PMID: 22844205
    • (2012) J R Stat Soc Series B Stat Methodol , vol.74 , pp. 569-592
    • Evans, S.N.1    Matsen, F.A.2
  • 52
    • 84874882695 scopus 로고    scopus 로고
    • Edge principal components and squash clustering: Using the special structure of phylogenetic placement data for sample comparison
    • PMID: 23505415
    • Matsen FA, Evans SN (2013) Edge principal components and squash clustering: using the special structure of phylogenetic placement data for sample comparison. PLoS ONE 8: e56859. doi: 10.1371/journal.pone.0056859 PMID: 23505415
    • (2013) PLoS ONE , vol.8
    • Matsen, F.A.1    Evans, S.N.2
  • 53
    • 0029477712 scopus 로고
    • New "biodiversity" measures reveal a decrease in taxonomic distinctness with increasing stress
    • Warwick RM, Clarke KR (1995) New "biodiversity" measures reveal a decrease in taxonomic distinctness with increasing stress. Marine Ecology Progress Series 129: 301-305.
    • (1995) Marine Ecology Progress Series , vol.129 , pp. 301-305
    • Warwick, R.M.1    Clarke, K.R.2
  • 54
    • 84870722770 scopus 로고    scopus 로고
    • Bioinformatics for the Human Microbiome Project
    • PMID: 23209389
    • Gevers D, Pop M, Schloss PD, Huttenhower C (2012) Bioinformatics for the Human Microbiome Project. PLoS Comput. Biol. 8: e1002779. doi: 10.1371/journal.pcbi.1002779 PMID: 23209389
    • (2012) PLoS Comput. Biol. , vol.8
    • Gevers, D.1    Pop, M.2    Schloss, P.D.3    Huttenhower, C.4
  • 55
    • 0038377499 scopus 로고    scopus 로고
    • Streptococcal diversity in oral biofilms with respect to salivary function
    • PMID: 12798151
    • Rudney JD, Pan Y, Chen R (2003) Streptococcal diversity in oral biofilms with respect to salivary function. Arch. Oral Biol. 48: 475-493. PMID: 12798151
    • (2003) Arch. Oral Biol. , vol.48 , pp. 475-493
    • Rudney, J.D.1    Pan, Y.2    Chen, R.3
  • 56
    • 84863304598 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing. Vienna, Austria. Available
    • R Core Team (2014) R: A language and environment for statistical computing. R Foundation for Statistical Computing. Vienna, Austria. Available: http://www.R-project.org/
    • (2014) R: A Language and Environment for Statistical Computing
  • 57
    • 0003143622 scopus 로고
    • Diversity and dissimilarity coefficients: A unified approach
    • Rao CR (1982) Diversity and dissimilarity coefficients: A unified approach. Theoretical Population Biology 21: 24-43.
    • (1982) Theoretical Population Biology , vol.21 , pp. 24-43
    • Rao, C.R.1


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