-
1
-
-
70349969478
-
Mutational evolution in a lobular breast tumour profled at single nucleotide resolution
-
Shah, S.P., Morin, R.D., Khattra, J., Prentice, L., Pugh, T., Burleigh, A., Delaney, A., Gelmon, K., Guliany, R., Senz, J. et al. (2009) Mutational evolution in a lobular breast tumour profled at single nucleotide resolution. Nature, 461, 809-813.
-
(2009)
Nature
, vol.461
, pp. 809-813
-
-
Shah, S.P.1
Morin, R.D.2
Khattra, J.3
Prentice, L.4
Pugh, T.5
Burleigh, A.6
Delaney, A.7
Gelmon, K.8
Guliany, R.9
Senz, J.10
-
2
-
-
78049398107
-
Distant metastasis occurs late during the genetic evolution of pancreatic cancer
-
Yachida, S., Jones, S., Bozic, I., Antal, T., Leary, R., Fu, B., Kamiyama, M., Hruban, R.H., Eshleman, J.R., Nowak, M.A. et al. (2010) Distant metastasis occurs late during the genetic evolution of pancreatic cancer. Nature, 467, 1114-1117.
-
(2010)
Nature
, vol.467
, pp. 1114-1117
-
-
Yachida, S.1
Jones, S.2
Bozic, I.3
Antal, T.4
Leary, R.5
Fu, B.6
Kamiyama, M.7
Hruban, R.H.8
Eshleman, J.R.9
Nowak, M.A.10
-
3
-
-
84863393080
-
Intratumor heterogeneity and branched evolution revealed by multiregion sequencing
-
Gerlinger, M., Rowan, A.J., Horswell, S., Larkin, J., Endesfelder, D., Gronroos, E., Martinez, P., Matthews, N., Stewart, A., Tarpey, P. et al. (2012) Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. N. Engl J. Med., 366, 883-892.
-
(2012)
N. Engl J. Med.
, vol.366
, pp. 883-892
-
-
Gerlinger, M.1
Rowan, A.J.2
Horswell, S.3
Larkin, J.4
Endesfelder, D.5
Gronroos, E.6
Martinez, P.7
Matthews, N.8
Stewart, A.9
Tarpey, P.10
-
4
-
-
84907808265
-
Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing
-
Zhang, J., Fujimoto, J., Zhang, J., Wedge, D.C., Song, X., Zhang, J., Seth, S., Chow, C.-W., Cao, Y., Gumbs, C. et al. (2014) Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing. Science, 346, 256-259.
-
(2014)
Science
, vol.346
, pp. 256-259
-
-
Zhang, J.1
Fujimoto, J.2
Zhang, J.3
Wedge, D.C.4
Song, X.5
Zhang, J.6
Seth, S.7
Chow, C.-W.8
Cao, Y.9
Gumbs, C.10
-
5
-
-
84907855592
-
Spatial and temporal diversity in genomic instability processes defnes lung cancer evolution
-
de Bruin, E.C., McGranahan, N., Mitter, R., Salm, M., Wedge, D.C., Yates, L., Jamal-Hanjani, M., Shaf, S., Murugaesu, N., Rowan, A.J. et al. (2014) Spatial and temporal diversity in genomic instability processes defnes lung cancer evolution. Science, 346, 251-256.
-
(2014)
Science
, vol.346
, pp. 251-256
-
-
De Bruin, E.C.1
McGranahan, N.2
Mitter, R.3
Salm, M.4
Wedge, D.C.5
Yates, L.6
Jamal-Hanjani, M.7
Shaf, S.8
Murugaesu, N.9
Rowan, A.J.10
-
6
-
-
77951957381
-
SNVMix: Predicting single nucleotide variants from next-generation sequencing of tumors
-
Goya, R., Sun, M.G., Morin, R.D., Leung, G., Ha, G., Wiegand, K.C., Senz, J., Crisan, A., Marra, M.A., Hirst, M. et al. (2010) SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors. Bioinformatics, 26, 730-736.
-
(2010)
Bioinformatics
, vol.26
, pp. 730-736
-
-
Goya, R.1
Sun, M.G.2
Morin, R.D.3
Leung, G.4
Ha, G.5
Wiegand, K.C.6
Senz, J.7
Crisan, A.8
Marra, M.A.9
Hirst, M.10
-
7
-
-
84859249611
-
JointSNVMix: A probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data
-
Roth, A., Ding, J., Morin, R.D., Crisan, A., Ha, G., Giuliany, R., Bashashati, A., Hirst, M., Turashvili, G., Oloumi, A. et al. (2012) JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data. Bioinformatics, 28, 907-913.
-
(2012)
Bioinformatics
, vol.28
, pp. 907-913
-
-
Roth, A.1
Ding, J.2
Morin, R.D.3
Crisan, A.4
Ha, G.5
Giuliany, R.6
Bashashati, A.7
Hirst, M.8
Turashvili, G.9
Oloumi, A.10
-
8
-
-
84880056229
-
Genome evolution during progression to breast cancer
-
Newburger, D.E., Kashef-Haghighi, D., Weng, Z., Salari, R., Sweeney, R.T., Brunner, A.L., Zhu, S.X., Guo, X., Varma, S., Troxell, M.L. et al. (2013) Genome evolution during progression to breast cancer. Genome Res., 23, 1097-1108.
-
(2013)
Genome Res.
, vol.23
, pp. 1097-1108
-
-
Newburger, D.E.1
Kashef-Haghighi, D.2
Weng, Z.3
Salari, R.4
Sweeney, R.T.5
Brunner, A.L.6
Zhu, S.X.7
Guo, X.8
Varma, S.9
Troxell, M.L.10
-
9
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., Garimella, K., Altshuler, D., Gabriel, S., Daly, M. et al. (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res., 20, 1297-1303.
-
(2010)
Genome Res.
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
Garimella, K.7
Altshuler, D.8
Gabriel, S.9
Daly, M.10
-
10
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo, M.A., Banks, E., Poplin, R., Garimella, K.V., Maguire, J.R., Hartl, C., Philippakis, A.A., del Angel, G., Rivas, M.A., Hanna, M. et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet., 43, 491-498.
-
(2011)
Nat. Genet.
, vol.43
, pp. 491-498
-
-
Depristo, M.A.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
Hartl, C.6
Philippakis, A.A.7
Del Angel, G.8
Rivas, M.A.9
Hanna, M.10
-
11
-
-
66449114324
-
SNP detection for massively parallel whole-genome resequencing
-
Li, R., Li, Y., Fang, X., Yang, H., Wang, J., Kristiansen, K. and Wang, J. (2009) SNP detection for massively parallel whole-genome resequencing. Genome Res., 19, 1124-1132.
-
(2009)
Genome Res.
, vol.19
, pp. 1124-1132
-
-
Li, R.1
Li, Y.2
Fang, X.3
Yang, H.4
Wang, J.5
Kristiansen, K.6
Wang, J.7
-
12
-
-
0036852246
-
Neighboring-nucleotide effects on single nucleotide polymorphisms: A study of 2.6 million polymorphisms across the human genome
-
Zhao, Z. and Boerwinkle, E. (2002) Neighboring-nucleotide effects on single nucleotide polymorphisms: a study of 2.6 million polymorphisms across the human genome. Genome Res., 12, 1679-1686.
-
(2002)
Genome Res.
, vol.12
, pp. 1679-1686
-
-
Zhao, Z.1
Boerwinkle, E.2
-
13
-
-
84856565531
-
SomaticSniper: Identifcation of somatic point mutations in whole genome sequencing data
-
Larson, D.E., Harris, C.C., Chen, K., Koboldt, D.C., Abbott, T.E., Dooling, D.J., Ley, T.J., Mardis, E.R., Wilson, R.K. and Ding, L. (2012) SomaticSniper: identifcation of somatic point mutations in whole genome sequencing data. Bioinformatics, 28, 311-317.
-
(2012)
Bioinformatics
, vol.28
, pp. 311-317
-
-
Larson, D.E.1
Harris, C.C.2
Chen, K.3
Koboldt, D.C.4
Abbott, T.E.5
Dooling, D.J.6
Ley, T.J.7
Mardis, E.R.8
Wilson, R.K.9
Ding, L.10
-
14
-
-
84874025843
-
Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
-
Cibulskis, K., Lawrence, M.S., Carter, S.L., Sivachenko, A., Jaffe, D., Sougnez, C., Gabriel, S., Meyerson, M., Lander, E.S. and Getz, G. (2013) Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat. Biotechnol., 31, 213-219.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 213-219
-
-
Cibulskis, K.1
Lawrence, M.S.2
Carter, S.L.3
Sivachenko, A.4
Jaffe, D.5
Sougnez, C.6
Gabriel, S.7
Meyerson, M.8
Lander, E.S.9
Getz, G.10
-
15
-
-
84905576523
-
Integrating mapping-, assembly-and haplotype-based approaches for calling variants in clinical sequencing applications
-
Rimmer, A., Phan, H., Mathieson, I., Iqbal, Z., Twigg, S.R.F., Wilkie, A.O.M., McVean, G., Lunter, G. and WGS500 Consortium. (2014) Integrating mapping-, assembly-and haplotype-based approaches for calling variants in clinical sequencing applications. Nat. Genet., 46, 912-918.
-
(2014)
Nat. Genet.
, vol.46
, pp. 912-918
-
-
Rimmer, A.1
Phan, H.2
Mathieson, I.3
Iqbal, Z.4
Twigg, S.R.F.5
Wilkie, A.O.M.6
McVean, G.7
Lunter, G.8
|