메뉴 건너뛰기




Volumn 182, Issue 1, 2015, Pages 1-8

Use of the Microbiome in the Practice of Epidemiology: A Primer on -Omic Technologies

Author keywords

bioinformatics; diversity; genomics; microbiome; microbiota

Indexed keywords

BIOINFORMATICS; COHORT ANALYSIS; EPIDEMIOLOGY; GENETIC ANALYSIS; GENOMICS; HYPOTHESIS TESTING; LITERATURE REVIEW; MICROBIAL COMMUNITY; PERFORMANCE ASSESSMENT; RELATIVE ABUNDANCE; SPECIES DIVERSITY;

EID: 84936766129     PISSN: 00029262     EISSN: 14766256     Source Type: Journal    
DOI: 10.1093/aje/kwv102     Document Type: Article
Times cited : (22)

References (77)
  • 1
    • 84937901925 scopus 로고    scopus 로고
    • The intestinal microbiome in early life: Health and disease
    • Arrieta M-C, Stiemsma LT, Amenyogbe N, et al. The intestinal microbiome in early life: health and disease. Front Immunol. 2014;5:427.
    • (2014) Front Immunol , vol.5 , pp. 427
    • Arrieta, M.-C.1    Stiemsma, L.T.2    Amenyogbe, N.3
  • 2
    • 80054921127 scopus 로고    scopus 로고
    • The relationship of the oral microbiotia to periodontal health and disease
    • Curtis MA, Zenobia C, Darveau RP. The relationship of the oral microbiotia to periodontal health and disease. Cell Host Microbe. 2011;10(4):302-306.
    • (2011) Cell Host Microbe , vol.10 , Issue.4 , pp. 302-306
    • Curtis, M.A.1    Zenobia, C.2    Darveau, R.P.3
  • 3
    • 85015074484 scopus 로고    scopus 로고
    • Perturbation of the human microbiome as a contributor to inflammatory bowel disease
    • Missaghi B, Barkema HW, Madsen KL, et al. Perturbation of the human microbiome as a contributor to inflammatory bowel disease. Pathogens. 2014;3(3):510-527.
    • (2014) Pathogens , vol.3 , Issue.3 , pp. 510-527
    • Missaghi, B.1    Barkema, H.W.2    Madsen, K.L.3
  • 4
    • 84921742288 scopus 로고    scopus 로고
    • Cancer and the gut microbiota: An unexpected link
    • 271ps1
    • Zitvogel L, Galluzzi L, Viaud S, et al. Cancer and the gut microbiota: an unexpected link. Sci Transl Med. 2015;7(271): 271ps1.
    • (2015) Sci Transl Med , vol.7 , pp. 271
    • Zitvogel, L.1    Galluzzi, L.2    Viaud, S.3
  • 5
    • 84920943976 scopus 로고    scopus 로고
    • The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota
    • Lagier JC, Hugon P, Khelaifia S, et al. The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota. ClinMicrobiol Rev. 2015;28(1):237-264.
    • (2015) ClinMicrobiol Rev , vol.28 , Issue.1 , pp. 237-264
    • Lagier, J.C.1    Hugon, P.2    Khelaifia, S.3
  • 6
    • 84923685057 scopus 로고    scopus 로고
    • Elevated levels of circulating DNA in cardiovascular disease patients: Metagenomic profiling of microbiome in the circulation
    • Dinakaran V, Rathinavel A, Pushpanathan M, et al. Elevated levels of circulating DNA in cardiovascular disease patients: metagenomic profiling of microbiome in the circulation. PLoS One. 2014;9(8):e105221.
    • (2014) PLoS One , vol.9 , Issue.8 , pp. e105221
    • Dinakaran, V.1    Rathinavel, A.2    Pushpanathan, M.3
  • 7
    • 84919336798 scopus 로고    scopus 로고
    • Exploring preterm birth as a polymicrobial disease: An overview of the uterine microbiome
    • Payne MS, Bayatibojakhi S. Exploring preterm birth as a polymicrobial disease: an overview of the uterine microbiome. Front Immunol. 2014;5:595.
    • (2014) Front Immunol , vol.5 , pp. 595
    • Payne, M.S.1    Bayatibojakhi, S.2
  • 9
    • 84876414806 scopus 로고    scopus 로고
    • The gut microbiota-masters of host development and physiology
    • Sommer F, Bäckhed F. The gut microbiota-masters of host development and physiology. Nat Rev Microbiol. 2013;11(4): 227-238.
    • (2013) Nat Rev Microbiol , vol.11 , Issue.4 , pp. 227-238
    • Sommer, F.1    Bäckhed, F.2
  • 10
    • 79952756960 scopus 로고    scopus 로고
    • Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
    • Dethlefsen L, Relman DA. Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc Natl Acad Sci U S A. 2011;108(suppl 1):4554-4561.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 4554-4561
    • Dethlefsen, L.1    Relman, D.A.2
  • 11
    • 84904967958 scopus 로고    scopus 로고
    • Effects of polysaccharopeptide from trametes versicolor and amoxicillin on the gut microbiome of healthy volunteers: A randomized clinical trial
    • Pallav K, Dowd SE, Villafuerte J, et al. Effects of polysaccharopeptide from Trametes versicolor and amoxicillin on the gut microbiome of healthy volunteers: a randomized clinical trial. Gut Microbes. 2014;5(4):458-467.
    • (2014) Gut Microbes , vol.5 , Issue.4 , pp. 458-467
    • Pallav, K.1    Dowd, S.E.2    Villafuerte, J.3
  • 12
    • 80051679965 scopus 로고    scopus 로고
    • Clostridium difficile infection: An overview of the disease and its pathogenesis, epidemiology and interventions
    • Viswanathan VK, Mallozzi MJ, Vedantam G. Clostridium difficile infection: an overview of the disease and its pathogenesis, epidemiology and interventions. Gut Microbes. 2010;1(4):234-242.
    • (2010) Gut Microbes , vol.1 , Issue.4 , pp. 234-242
    • Viswanathan, V.K.1    Mallozzi, M.J.2    Vedantam, G.3
  • 13
    • 84863719891 scopus 로고    scopus 로고
    • Long-term follow-up of colonoscopic fecal microbiota transplant for recurrent clostridium difficile infection
    • Brandt LJ, Aroniadis OC, Mellow M, et al. Long-term follow-up of colonoscopic fecal microbiota transplant for recurrent Clostridium difficile infection. Am J Gastroenterol. 2012;107(7):1079-1087.
    • (2012) Am J Gastroenterol , vol.107 , Issue.7 , pp. 1079-1087
    • Brandt, L.J.1    Aroniadis, O.C.2    Mellow, M.3
  • 14
    • 84875952542 scopus 로고    scopus 로고
    • Fecal microbiota transplantation for clostridium difficile infection: Systematic review and meta-Analysis
    • Kassam Z, Lee CH, Yuan Y, et al. Fecal microbiota transplantation for Clostridium difficile infection: systematic review and meta-Analysis. Am J Gastroenterol. 2013;108(4): 500-508.
    • (2013) Am J Gastroenterol , vol.108 , Issue.4 , pp. 500-508
    • Kassam, Z.1    Lee, C.H.2    Yuan, Y.3
  • 15
    • 84873019302 scopus 로고    scopus 로고
    • Duodenal infusion of donor feces for recurrent clostridium difficile
    • Van Nood E, Vrieze A, Nieuwdorp M, et al. Duodenal infusion of donor feces for recurrent Clostridium difficile. N Engl J Med. 2013;368(5):407-415.
    • (2013) N Engl J Med , vol.368 , Issue.5 , pp. 407-415
    • Van Nood, E.1    Vrieze, A.2    Nieuwdorp, M.3
  • 16
    • 84897127283 scopus 로고    scopus 로고
    • The virome in mammalian physiology and disease
    • Virgin HW. The virome in mammalian physiology and disease. Cell. 2014;157(1):142-150.
    • (2014) Cell , vol.157 , Issue.1 , pp. 142-150
    • Virgin, H.W.1
  • 17
    • 84889594211 scopus 로고    scopus 로고
    • Temporal response of the human virome to immunosuppression and antiviral therapy
    • De Vlaminck I, Khush KK, Strehl C, et al. Temporal response of the human virome to immunosuppression and antiviral therapy. Cell. 2013;155(5):1178-1187.
    • (2013) Cell , vol.155 , Issue.5 , pp. 1178-1187
    • De Vlaminck, I.1    Khush, K.K.2    Strehl, C.3
  • 18
    • 84883192222 scopus 로고    scopus 로고
    • Association between living environment and human oral viral ecology
    • Robles-Sikisaka R, Ly M, Boehm T, et al. Association between living environment and human oral viral ecology. ISME J. 2013;7(9):1710-1724.
    • (2013) ISME J , vol.7 , Issue.9 , pp. 1710-1724
    • Robles-Sikisaka, R.1    Ly, M.2    Boehm, T.3
  • 19
    • 84903975410 scopus 로고    scopus 로고
    • Altered oral viral ecology in association with periodontal disease
    • Ly M, Abeles SR, Boehm TK, et al. Altered oral viral ecology in association with periodontal disease. MBio. 2014;5(3): e01133-14.
    • (2014) MBio , vol.5 , Issue.3 , pp. e01133-e01214
    • Ly, M.1    Abeles, S.R.2    Boehm, T.K.3
  • 20
    • 84862169129 scopus 로고    scopus 로고
    • Sequence analysis of the human virome in febrile and afebrile children
    • Wylie KM, Mihindukulasuriya KA, Sodergren E, et al. Sequence analysis of the human virome in febrile and afebrile children. PLoS One. 2012;7(6):e27735.
    • (2012) PLoS One , vol.7 , Issue.6 , pp. e27735
    • Wylie, K.M.1    Mihindukulasuriya, K.A.2    Sodergren, E.3
  • 21
    • 70350545933 scopus 로고    scopus 로고
    • Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals
    • Willner D, Furlan M, Haynes M, et al. Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS One. 2009;4(10): e7370.
    • (2009) PLoS One , vol.4 , Issue.10 , pp. e7370
    • Willner, D.1    Furlan, M.2    Haynes, M.3
  • 22
  • 23
    • 84859885188 scopus 로고    scopus 로고
    • Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome
    • Pride DT, Salzman J, Haynes M, et al. Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. ISME J. 2012;6(5):915-926.
    • (2012) ISME J , vol.6 , Issue.5 , pp. 915-926
    • Pride, D.T.1    Salzman, J.2    Haynes, M.3
  • 24
    • 84880652104 scopus 로고    scopus 로고
    • Rapid evolution of the human gut virome
    • Minot S, Bryson A, Chehoud C, et al. Rapid evolution of the human gut virome. Proc Natl Acad Sci U S A. 2013;110(30): 12450-12455.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , Issue.30 , pp. 12450-12455
    • Minot, S.1    Bryson, A.2    Chehoud, C.3
  • 25
    • 84884986090 scopus 로고    scopus 로고
    • The human virome: New tools and concepts
    • Lecuit M, Eloit M. The human virome: new tools and concepts. Trends Microbiol. 2013;21(10):510-515.
    • (2013) Trends Microbiol , vol.21 , Issue.10 , pp. 510-515
    • Lecuit, M.1    Eloit, M.2
  • 26
    • 67649660551 scopus 로고    scopus 로고
    • Redefining chronic viral infection
    • Virgin HW, Wherry EJ, Ahmed R. Redefining chronic viral infection. Cell. 2009;138(1):30-50.
    • (2009) Cell , vol.138 , Issue.1 , pp. 30-50
    • Virgin, H.W.1    Wherry, E.J.2    Ahmed, R.3
  • 27
    • 84880335170 scopus 로고    scopus 로고
    • The human mycobiome in health and disease
    • Cui L, Morris A, Ghedin E. The human mycobiome in health and disease. Genome Med. 2013;5(7):63.
    • (2013) Genome Med , vol.5 , Issue.7 , pp. 63
    • Cui, L.1    Morris, A.2    Ghedin, E.3
  • 28
    • 84912557953 scopus 로고    scopus 로고
    • Archaea and the human gut: New beginning of an old story
    • Gaci N, Borrel G, Tottey W, et al. Archaea and the human gut: new beginning of an old story. World J Gastroenterol. 2014; 20(43):16062-16078.
    • (2014) World J Gastroenterol , vol.20 , Issue.43 , pp. 16062-16078
    • Gaci, N.1    Borrel, G.2    Tottey, W.3
  • 29
    • 84866146940 scopus 로고    scopus 로고
    • Diversity, stability and resilience of the human gut microbiota
    • Lozupone CA, Stombaugh JI, Gordon JI, et al. Diversity, stability and resilience of the human gut microbiota. Nature. 2012;489(7415):220-230.
    • (2012) Nature , vol.489 , Issue.7415 , pp. 220-230
    • Lozupone, C.A.1    Stombaugh, J.I.2    Gordon, J.I.3
  • 30
    • 84911928449 scopus 로고    scopus 로고
    • Dialogue between skin microbiota and immunity
    • Belkaid Y, Segre JA. Dialogue between skin microbiota and immunity. Science. 2014;346(6212):954-959.
    • (2014) Science , vol.346 , Issue.6212 , pp. 954-959
    • Belkaid, Y.1    Segre, J.A.2
  • 31
    • 84922925221 scopus 로고    scopus 로고
    • The vaginal microbiota: What have we learned after a decade of molecular characterization?
    • Van de Wijgert JHHM, Borgdorff H, Verhelst R, et al. The vaginal microbiota: what have we learned after a decade of molecular characterization? PLoS One. 2014;9(8):e105998.
    • (2014) PLoS One , vol.9 , Issue.8 , pp. e105998
    • Van De Wijgert, J.H.H.M.1    Borgdorff, H.2    Verhelst, R.3
  • 32
    • 84862286169 scopus 로고    scopus 로고
    • A framework for human microbiome research
    • Methé BA, Nelson KE, Pop M, et al. A framework for human microbiome research. Nature. 2012;486(7402):215-221.
    • (2012) Nature , vol.486 , Issue.7402 , pp. 215-221
    • Methé, B.A.1    Nelson, K.E.2    Pop, M.3
  • 33
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin J, Li R, Raes J, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010; 464(7285):59-65.
    • (2010) Nature , vol.464 , Issue.7285 , pp. 59-65
    • Qin, J.1    Li, R.2    Raes, J.3
  • 34
    • 78049502174 scopus 로고    scopus 로고
    • The bacterial microbiota in the oral mucosa of rural amerindians
    • Contreras M, Costello EK, Hidalgo G, et al. The bacterial microbiota in the oral mucosa of rural Amerindians. Microbiology. 2010;156(Pt 11):3282-3287.
    • (2010) Microbiology , vol.156 , pp. 3282-3287
    • Contreras, M.1    Costello, E.K.2    Hidalgo, G.3
  • 35
    • 84883478660 scopus 로고    scopus 로고
    • Gut microbiota from twins discordant for obesity modulate metabolism in mice
    • Ridaura VK, Faith JJ, Rey FE, et al. Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science. 2013;341(6150):1241214.
    • (2013) Science , vol.341 , Issue.6150 , pp. 1241214
    • Ridaura, V.K.1    Faith, J.J.2    Rey, F.E.3
  • 36
    • 58749112734 scopus 로고    scopus 로고
    • A core gut microbiome in obese and lean twins
    • Turnbaugh PJ, Hamady M, Yatsunenko T, et al. A core gut microbiome in obese and lean twins. Nature. 2009;457(7228): 480-484.
    • (2009) Nature , vol.457 , Issue.7228 , pp. 480-484
    • Turnbaugh, P.J.1    Hamady, M.2    Yatsunenko, T.3
  • 37
    • 84907563983 scopus 로고    scopus 로고
    • Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences
    • Cox LM, Yamanishi S, Sohn J, et al. Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences. Cell. 2014;158(4):705-721.
    • (2014) Cell , vol.158 , Issue.4 , pp. 705-721
    • Cox, L.M.1    Yamanishi, S.2    Sohn, J.3
  • 38
    • 84908681868 scopus 로고    scopus 로고
    • Oral, capsulized, frozen fecal microbiota transplantation for relapsing clostridium difficile infection
    • Youngster I, Russell GH, Pindar C, et al. Oral, capsulized, frozen fecal microbiota transplantation for relapsing Clostridium difficile infection. JAMA. 2014;312(17): 1772-1778.
    • (2014) JAMA , vol.312 , Issue.17 , pp. 1772-1778
    • Youngster, I.1    Russell, G.H.2    Pindar, C.3
  • 39
    • 84916229815 scopus 로고    scopus 로고
    • Fecal microbiota transplantation in inflammatory bowel disease: Beyond the excitement
    • Ianiro G, Bibbǒ S, Scaldaferri F, et al. Fecal microbiota transplantation in inflammatory bowel disease: beyond the excitement. Medicine (Baltimore). 2014;93(19):e97.
    • (2014) Medicine (Baltimore) , vol.93 , Issue.19 , pp. e97
    • Ianiro, G.1    Bibbǒ, S.2    Scaldaferri, F.3
  • 40
    • 0020891851 scopus 로고
    • Escherichia coli habitats, cell types, and molecular mechanisms of gene control
    • Savageau MA. Escherichia coli habitats, cell types, and molecular mechanisms of gene control. Am Nat. 1983;122(6): 732-744.
    • (1983) Am Nat , vol.122 , Issue.6 , pp. 732-744
    • Savageau, M.A.1
  • 41
    • 84871732071 scopus 로고    scopus 로고
    • Genomic variation landscape of the human gut microbiome
    • Schloissnig S, Arumugam M, Sunagawa S, et al. Genomic variation landscape of the human gut microbiome. Nature. 2013;493(7430):45-50.
    • (2013) Nature , vol.493 , Issue.7430 , pp. 45-50
    • Schloissnig, S.1    Arumugam, M.2    Sunagawa, S.3
  • 42
    • 84892828465 scopus 로고    scopus 로고
    • Diet rapidly and reproducibly alters the human gut microbiome
    • David LA, Maurice CF, Carmody RN, et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 2014; 505(7484):559-563.
    • (2014) Nature , vol.505 , Issue.7484 , pp. 559-563
    • David, L.A.1    Maurice, C.F.2    Carmody, R.N.3
  • 43
    • 78049494788 scopus 로고    scopus 로고
    • Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome
    • Jakobsson HE, Jernberg C, Andersson AF, et al. Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome. PLoS One. 2010;5(3): e9836.
    • (2010) PLoS One , vol.5 , Issue.3 , pp. e9836
    • Jakobsson, H.E.1    Jernberg, C.2    Andersson, A.F.3
  • 44
    • 79957967458 scopus 로고    scopus 로고
    • Natural genetic variation caused by small insertions and deletions in the human genome
    • Mills RE, Pittard WS, Mullaney JM, et al. Natural genetic variation caused by small insertions and deletions in the human genome. Genome Res. 2011;21(6):830-839.
    • (2011) Genome Res , vol.21 , Issue.6 , pp. 830-839
    • Mills, R.E.1    Pittard, W.S.2    Mullaney, J.M.3
  • 45
    • 59249089471 scopus 로고    scopus 로고
    • Organised genome dynamics in the escherichia coli species results in highly diverse adaptive paths
    • Touchon M, Hoede C, Tenaillon O, et al. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet. 2009;5(1):e1000344.
    • (2009) PLoS Genet , vol.5 , Issue.1 , pp. e1000344
    • Touchon, M.1    Hoede, C.2    Tenaillon, O.3
  • 46
    • 77955386857 scopus 로고    scopus 로고
    • Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
    • Dominguez-Bello MG, Costello EK, Contreras M, et al. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci U S A. 2010;107(26):11971-11975.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.26 , pp. 11971-11975
    • Dominguez-Bello, M.G.1    Costello, E.K.2    Contreras, M.3
  • 47
    • 84896884079 scopus 로고    scopus 로고
    • Secretory antibodies in breast milk promote long-term intestinal homeostasis by regulating the gut microbiota and host gene expression
    • Rogier EW, Frantz AL, Bruno MEC, et al. Secretory antibodies in breast milk promote long-term intestinal homeostasis by regulating the gut microbiota and host gene expression. Proc Natl Acad Sci U S A. 2014;111(8):3074-3079.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , Issue.8 , pp. 3074-3079
    • Rogier, E.W.1    Frantz, A.L.2    Bruno, M.E.C.3
  • 48
    • 84907190237 scopus 로고    scopus 로고
    • Longitudinal analysis of microbial interaction between humans and the indoor environment
    • Lax S, Smith DP, Hampton-Marcell J, et al. Longitudinal analysis of microbial interaction between humans and the indoor environment. Science. 2014;345(6200):1048-1052.
    • (2014) Science , vol.345 , Issue.6200 , pp. 1048-1052
    • Lax, S.1    Smith, D.P.2    Hampton-Marcell, J.3
  • 49
    • 84965187800 scopus 로고    scopus 로고
    • Temporal variability is a personalized feature of the human microbiome
    • Flores GE, Caporaso JG, Henley JB, et al. Temporal variability is a personalized feature of the human microbiome. Genome Biol. 2014;15(12):531.
    • (2014) Genome Biol , vol.15 , Issue.12 , pp. 531
    • Flores, G.E.1    Caporaso, J.G.2    Henley, J.B.3
  • 50
    • 84910096224 scopus 로고    scopus 로고
    • Human genetics shape the gut microbiome
    • Goodrich JK, Waters JL, Poole AC, et al. Human genetics shape the gut microbiome. Cell. 2014;159(4):789-799.
    • (2014) Cell , vol.159 , Issue.4 , pp. 789-799
    • Goodrich, J.K.1    Waters, J.L.2    Poole, A.C.3
  • 51
    • 77950904616 scopus 로고    scopus 로고
    • Forensic identification using skin bacterial communities
    • Fierer N, Lauber CL, Zhou N, et al. Forensic identification using skin bacterial communities. Proc Natl Acad Sci U S A. 2010;107(14):6477-6481.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.14 , pp. 6477-6481
    • Fierer, N.1    Lauber, C.L.2    Zhou, N.3
  • 52
    • 84900535804 scopus 로고    scopus 로고
    • Dynamics and associations of microbial community types across the human body
    • Ding T, Schloss PD. Dynamics and associations of microbial community types across the human body. Nature. 2014; 509(7500):357-360.
    • (2014) Nature , vol.509 , Issue.7500 , pp. 357-360
    • Ding, T.1    Schloss, P.D.2
  • 53
    • 77957979642 scopus 로고    scopus 로고
    • Comparative metagenomics and population dynamics of the gut microbiota in mother and infant
    • Vaishampayan PA, Kuehl JV, Froula JL, et al. Comparative metagenomics and population dynamics of the gut microbiota in mother and infant. Genome Biol Evol. 2010;2:53-66.
    • (2010) Genome Biol Evol , vol.2 , pp. 53-66
    • Vaishampayan, P.A.1    Kuehl, J.V.2    Froula, J.L.3
  • 54
    • 84961291157 scopus 로고    scopus 로고
    • Which is more important for classifying microbial communities: Who's there or what they can do?
    • Xu Z, Malmer D, Langille MGI, et al. Which is more important for classifying microbial communities: who's there or what they can do? ISME J. 2014;8(12):2357-2359.
    • (2014) ISME J , vol.8 , Issue.12 , pp. 2357-2359
    • Xu, Z.1    Malmer, D.2    Langille, M.G.I.3
  • 55
    • 84862192626 scopus 로고    scopus 로고
    • Evaluation of 16s rDNA-based community profiling for human microbiome research
    • Jumpstart Consortium Human Microbiome Project Data Generation Working Group
    • Jumpstart Consortium Human Microbiome Project Data Generation Working Group. Evaluation of 16S rDNA-based community profiling for human microbiome research. PLoS One. 2012;7(6):e39315.
    • (2012) PLoS One , vol.7 , Issue.6 , pp. e39315
  • 56
    • 84897128562 scopus 로고    scopus 로고
    • Kingdom-Agnostic metagenomics and the importance of complete characterization of enteric microbial communities
    • Norman JM, Handley SA, Virgin HW. Kingdom-Agnostic metagenomics and the importance of complete characterization of enteric microbial communities. Gastroenterology. 2014; 146(6):1459-1469.
    • (2014) Gastroenterology , vol.146 , Issue.6 , pp. 1459-1469
    • Norman, J.M.1    Handley, S.A.2    Virgin, H.W.3
  • 57
    • 84874776480 scopus 로고    scopus 로고
    • A roadmap to the human virome
    • Delwart E. A roadmap to the human virome. PLoS Pathog. 2013;9(2):e1003146.
    • (2013) PLoS Pathog , vol.9 , Issue.2 , pp. e1003146
    • Delwart, E.1
  • 58
    • 84910111340 scopus 로고    scopus 로고
    • Molecular bases and role of viruses in the human microbiome
    • Abeles SR, Pride DT. Molecular bases and role of viruses in the human microbiome. J Mol Biol. 2014;426(23):3892-3906.
    • (2014) J Mol Biol , vol.426 , Issue.23 , pp. 3892-3906
    • Abeles, S.R.1    Pride, D.T.2
  • 59
    • 84923101545 scopus 로고    scopus 로고
    • Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis
    • Willger SD, Grim SL, Dolben EL, et al. Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis. Microbiome. 2014;2:40.
    • (2014) Microbiome , vol.2 , pp. 40
    • Willger, S.D.1    Grim, S.L.2    Dolben, E.L.3
  • 60
  • 61
    • 84898808700 scopus 로고    scopus 로고
    • Meta'omic analytic techniques for studying the intestinal microbiome
    • e1
    • Morgan XC, Huttenhower C. Meta'omic analytic techniques for studying the intestinal microbiome. Gastroenterology. 2014;146(6):1437-1448.e1.
    • (2014) Gastroenterology , vol.146 , Issue.6 , pp. 1437-1448
    • Morgan, X.C.1    Huttenhower, C.2
  • 62
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 2009;75(23):7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , Issue.23 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3
  • 63
    • 73449128271 scopus 로고    scopus 로고
    • Fast unifrac facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and phylochip data
    • Hamady M, Lozupone C, Knight R. Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J. 2010;4(1):17-27.
    • (2010) ISME J , vol.4 , Issue.1 , pp. 17-27
    • Hamady, M.1    Lozupone, C.2    Knight, R.3
  • 64
    • 84884127512 scopus 로고    scopus 로고
    • Predictive functional profiling of microbial communities using 16s rRNA marker gene sequences
    • Langille MGI, Zaneveld J, Caporaso JG, et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol. 2013;31(9): 814-821.
    • (2013) Nat Biotechnol , vol.31 , Issue.9 , pp. 814-821
    • Langille, M.G.I.1    Zaneveld, J.2    Caporaso, J.G.3
  • 65
    • 84881548286 scopus 로고    scopus 로고
    • Computational meta'omics for microbial community studies
    • Segata N, Boernigen D, Tickle TL, et al. Computational meta'omics for microbial community studies. Mol Syst Biol. 2013;9:666.
    • (2013) Mol Syst Biol , vol.9 , pp. 666
    • Segata, N.1    Boernigen, D.2    Tickle, T.L.3
  • 66
    • 84904569753 scopus 로고    scopus 로고
    • Conducting a microbiome study
    • Goodrich JK, Di Rienzi SC, Poole AC, et al. Conducting a microbiome study. Cell. 2014;158(2):250-262.
    • (2014) Cell , vol.158 , Issue.2 , pp. 250-262
    • Goodrich, J.K.1    Di Rienzi, S.C.2    Poole, A.C.3
  • 67
    • 84920644670 scopus 로고    scopus 로고
    • Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
    • Salter SJ, Cox MJ, Turek EM, et al. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol. 2014;12:87.
    • (2014) BMC Biol , vol.12 , pp. 87
    • Salter, S.J.1    Cox, M.J.2    Turek, E.M.3
  • 68
    • 84928825527 scopus 로고    scopus 로고
    • The preterm placental microbiome varies in association with excess maternal gestational weight gain
    • Antony KM, Ma J, Mitchell KB, et al. The preterm placental microbiome varies in association with excess maternal gestational weight gain. Am J Obstet Gynecol. 2015;212(5): 653.e1-653.e16.
    • (2015) Am J Obstet Gynecol , vol.212 , Issue.5 , pp. 653e1-653e16
    • Antony, K.M.1    Ma, J.2    Mitchell, K.B.3
  • 69
    • 84905974289 scopus 로고    scopus 로고
    • The effects of intestinal tract bacterial diversity on mortality following allogeneic hematopoietic stem cell transplantation
    • Taur Y, Jenq RR, Perales M-A, et al. The effects of intestinal tract bacterial diversity on mortality following allogeneic hematopoietic stem cell transplantation. Blood. 2014;124(7): 1174-1182.
    • (2014) Blood , vol.124 , Issue.7 , pp. 1174-1182
    • Taur, Y.1    Jenq, R.R.2    Perales, M.-A.3
  • 70
    • 84916886220 scopus 로고    scopus 로고
    • Advancing the microbiome research community
    • Huttenhower C, Knight R, Brown CT, et al. Advancing the microbiome research community. Cell. 2014;159(2): 227-230.
    • (2014) Cell , vol.159 , Issue.2 , pp. 227-230
    • Huttenhower, C.1    Knight, R.2    Brown, C.T.3
  • 71
    • 84862173705 scopus 로고    scopus 로고
    • A core human microbiome as viewed through 16s rRNA sequence clusters
    • Huse SM, Ye Y, Zhou Y, et al. A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS One. 2012; 7(6):e34242.
    • (2012) PLoS One , vol.7 , Issue.6 , pp. e34242
    • Huse, S.M.1    Ye, Y.2    Zhou, Y.3
  • 72
    • 84907276513 scopus 로고    scopus 로고
    • Metagenomic analysis of double-stranded DNA viruses in healthy adults
    • Wylie KM, Mihindukulasuriya KA, Zhou Y, et al. Metagenomic analysis of double-stranded DNA viruses in healthy adults. BMC Biol. 2014;12:71.
    • (2014) BMC Biol , vol.12 , pp. 71
    • Wylie, K.M.1    Mihindukulasuriya, K.A.2    Zhou, Y.3
  • 73
    • 84862522999 scopus 로고    scopus 로고
    • Human skin microbiota: High diversity of DNA viruses identified on the human skin by high throughput sequencing
    • Foulongne V, Sauvage V, Hebert C, et al. Human skin microbiota: high diversity of DNA viruses identified on the human skin by high throughput sequencing. PLoS One. 2012; 7(6):e38499.
    • (2012) PLoS One , vol.7 , Issue.6 , pp. e38499
    • Foulongne, V.1    Sauvage, V.2    Hebert, C.3
  • 74
    • 57349131283 scopus 로고    scopus 로고
    • Micro-eukaryotic diversity of the human distal gut microbiota: Qualitative assessment using culture-dependent and-independent analysis of faeces
    • Scanlan PD, Marchesi JR. Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and-independent analysis of faeces. ISME J. 2008;2(12):1183-1193.
    • (2008) ISME J , vol.2 , Issue.12 , pp. 1183-1193
    • Scanlan, P.D.1    Marchesi, J.R.2
  • 75
    • 84879414990 scopus 로고    scopus 로고
    • Topographic diversity of fungal and bacterial communities in human skin
    • Findley K, Oh J, Yang J, et al. Topographic diversity of fungal and bacterial communities in human skin. Nature. 2013; 498(7454):367-370.
    • (2013) Nature , vol.498 , Issue.7454 , pp. 367-370
    • Findley, K.1    Oh, J.2    Yang, J.3
  • 76
    • 84874421892 scopus 로고    scopus 로고
    • Characterization of the oral fungal microbiota in smokers and non-smokers
    • Monteiro-da-Silva F, Sampaio-Maia B, Pereira M de L, et al. Characterization of the oral fungal microbiota in smokers and non-smokers. Eur J Oral Sci. 2013;121(2):132-135.
    • (2013) Eur J Oral Sci , vol.121 , Issue.2 , pp. 132-135
    • Monteiro-Da-Silva, F.1    Sampaio-Maia, B.2    De Pereira, M.L.3
  • 77
    • 84872765293 scopus 로고    scopus 로고
    • Characterization of the vaginal micro-And mycobiome in asymptomatic reproductive-Age estonian women
    • Drell T, Lillsaar T, Tummeleht L, et al. Characterization of the vaginal micro-And mycobiome in asymptomatic reproductive-Age Estonian women. PLoS One. 2013;8(1): e54379.
    • (2013) PLoS One , vol.8 , Issue.1 , pp. e54379
    • Drell, T.1    Lillsaar, T.2    Tummeleht, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.