Erratum to: Identification of Site-Specific Stroke Biomarker Candidates by Laser Capture Microdissection and Labeled Reference Peptide (International Journal of Molecular Sciences, (2015), 16, (13427-13441), 10.3390/ijms160613427);Identification of site-specific stroke biomarker candidates by laser capture microdissection and labeled reference peptide

International Journal of Molecular Sciences

Volumn 16, Issue 6, 2015, Pages 13427-13441

  Lian, Tingting ^a   Qu, Daixin ^a   Zhao, Xu ^a   Yu, Lixia ^a   Gao, Bing ^a  

^a SOUTH CHINA UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

Biomarker; Blood brain barrier (BBB); Labeled reference peptide (LRP); Laser capture microdissection (LCM); Multiple reaction monitoring (MRM); Stroke

Indexed keywords

2', 3' CYCLIC NUCLEOTIDE 3' PHOSPHODIESTERASE; ALPHA INTERNEXIN; BETA TUBULIN; BIOLOGICAL MARKER; GLIAL FIBRILLARY ACIDIC PROTEIN; LABELED REFERENCE PEPTIDE; MALTOSE BINDING PROTEIN; MEMBRANE PROTEIN; MICROTUBULE ASSOCIATED PROTEIN 2; MYELIN BASIC PROTEIN; NEUROFILAMENT LIGHT POLYPEPTIDE; NEURON SPECIFIC ENOLASE; PEPTIDES AND PROTEINS; PROTEOLIPID PROTEIN; TAU PROTEIN; UBIQUITIN CARBOXYL TERMINAL HYDROLASE ISOZYME L1; UNCLASSIFIED DRUG; PEPTIDE FRAGMENT;

ADULT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; BLOOD BRAIN BARRIER; BRAIN CORTEX; BRAIN ISCHEMIA; BRAIN TISSUE; CEREBROVASCULAR ACCIDENT; LASER CAPTURE MICRODISSECTION; MALE; MASS SPECTROMETRY; MICROTUBULE; MIDDLE CEREBRAL ARTERY OCCLUSION; NEUROFILAMENT; NONHUMAN; OPTICAL COHERENCE TOMOGRAPHY; RAT; ANIMAL; BRAIN; CEREBRAL ARTERY DISEASE; COMPLICATION; MATRIX-ASSISTED LASER DESORPTION-IONIZATION MASS SPECTROMETRY; METABOLISM; PATHOLOGY; PROCEDURES; SPRAGUE DAWLEY RAT; STANDARD; STROKE; TISSUE DISTRIBUTION;

RATTUS;

ANIMALS; BIOMARKERS; BRAIN; INFARCTION, MIDDLE CEREBRAL ARTERY; LASER CAPTURE MICRODISSECTION; MALE; PEPTIDE FRAGMENTS; RATS; RATS, SPRAGUE-DAWLEY; REFERENCE STANDARDS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; STROKE; TISSUE DISTRIBUTION;

EID: 84935020125     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms18040881     Document Type: Erratum

References (29)

1. Jickling, G.C.; Sharp, F.R. Blood biomarkers of ischemic stroke. Neurotherapeutics 2011, 8, 349–360.
2. Fernandez-Lopez, D.; Faustino, J.; Daneman, R.; Zhou, L.; Lee, S.Y.; Derugin, N.; Wendland, M.F.; Vexler, Z.S. Blood-brain barrier permeability is increased after acute adult stroke but not neonatal stroke in the rat. J. Neurosci. 2012, 32, 9588–9600.
3. Cui, X.; Chopp, M.; Zacharek, A.; Karasinska, J.M.; Cui, Y.; Ning, R.; Zhang, Y.; Wang, Y.; Chen, J. Deficiency of brain ATP-binding cassette transporter A-1 exacerbates blood-brain barrier and white matter damage after stroke. Stroke 2015, 46, 827–834.
4. Saenger, A.K.; Christenson, R.H. Stroke biomarkers: Progress and challenges for diagnosis, prognosis, differentiation, and treatment. Clin. Chem. 2010, 56, 21–33.
5. Jensen, M.B.; Chacon, M.R.; Sattin, J.A.; Aleu, A.; Lyden, P.D. The promise and potential pitfalls of serum biomarkers for ischemic stroke and transient ischemic attack. Neurologist 2008, 14, 243–246.
6. Hill, M.D.; Jackowski, G.; Bayer, N.; Lawrence, M.; Jaeschke, R. Biochemical markers in acute ischemic stroke. Can. Med. Assoc. J. 2000, 162, 1139–1140.
7. Emmert-Buck, M.R.; Wulfkuhle, J.D.; Calvert, V.S.; van Meter, A.; Zhou, W.; Coukos, G.; Geho, D.H.; Petricoin, E.F., 3rd.; Liotta, L.A. Laser capture microdissection. Science 1996, 274, 998–1001.
8. Subramanian, M.; Holt, A.G.; Mueller, P.J. Physical activity correlates with glutamate receptor gene expression in spinally-projecting RVLM neurons: A laser capture microdissection study. Brain Res. 2014, 1585, 51–62.
9. Hebbar, S.; Schulz, W.D.; Sauer, U.; Schwudke, D. Laser capture microdissection coupled with on-column extraction LC–MS(n) enables lipidomics of fluorescently labeled Drosophila neurons. Anal. Chem. 2014, 86, 5345–5352.
10. Bagnato, C.; Thumar, J.; Mayya, V.; Hwang, S.I.; Zebroski, H.; Claffey, K.P.; Haudenschild, C.; Eng, J.K.; Lundgren, D.H.; Han, D.K. Proteomics analysis of human coronary atherosclerotic plaque: A feasibility study of direct tissue proteomics by liquid chromatography and tandem mass spectrometry. Mol. Cell. Proteomics 2007, 6, 1088–1102.
11. Guzel, C.; Ursem, N.T.; Dekker, L.J.; Derkx, P.; Joore, J.; van Dijk, E.; Ligtvoet, G.; Steegers, E.A.; Luider, T.M. Multiple reaction monitoring assay for pre-eclampsia related calcyclin peptides in formalin fixed paraffin embedded placenta. J. Proteome Res. 2011, 10, 3274–3282.
12. Zhang, H.; Liu, Q.; Zimmerman, L.J.; Ham, A.J.; Slebos, R.J.; Rahman, J.; Kikuchi, T.; Massion, P.P.; Carbone, D.P.; Billheimer, D.; et al. Methods for peptide and protein quantitation by liquid chromatography-multiple reaction monitoring mass spectrometry. Mol. Cell. Proteomics 2011, 10, M110 006593.
13. Longa, E.Z.; Weinstein, P.R.; Carlson, S.; Cummins, R. Reversible middle cerebral artery occlusion without craniectomy in rats. Stroke 1989, 20, 84–91.
14. Krueger, M.; Bechmann, I.; Immig, K.; Reichenbach, A.; Härtig, W.; Michalski, D. Blood-brain barrier breakdown involves four distinct stages of vascular damage in various models of experimental focal cerebral ischemia. J. Cereb. Blood Flow Metab. 2014, 35, 292–303.
15. Herrmann, M.; Vos, P.; Wunderlich, M.T.; de Bruijn, C.H.; Lamers, K.J. Release of glial tissue-specific proteins after acute stroke: A comparative analysis of serum concentrations of protein S-100B and glial fibrillary acidic protein. Stroke 2000, 31, 2670–2677.
16. Foerch, C.; Curdt, I.; Yan, B.; Dvorak, F.; Hermans, M.; Berkefeld, J.; Raabe, A.; Neumann-Haefelin, T.; Steinmetz, H.; Sitzer, M. Serum glial fibrillary acidic protein as a biomarker for intracerebral haemorrhage in patients with acute stroke. J. Neurol. Neurosurg. Psychiatry 2006, 77, 181–184.
17. Laser-Azogui, A.; Kornreich, M.; Malka-Gibor, E.; Beck, R. Neurofilament assembly and function during neuronal development. Curr. Opin. Cell Biol. 2015, 32C, 92–101.
18. Liu, Y.; Staal, J.A.; Canty, A.J.; Kirkcaldie, M.T.; King, A.E.; Bibari, O.; Mitew, S.T.; Dickson, T.C.; Vickers, J.C. Cytoskeletal changes during development and aging in the cortex of neurofilament light protein knockout mice. J. Comp. Neurol. 2013, 521, 1817–1827.
19. Delacourte, A.; Defossez, A. Alzheimer’s disease: Tau proteins, the promoting factors of microtubule assembly, are major components of paired helical filaments. J. Neurol. Sci. 1986, 76, 173–186.
20. Yushmanov, V.E.; Kharlamov, A.; Simplaceanu, E.; Williams, D.S.; Jones, S.C. Differences between arterial occlusive and cortical photothrombosis stroke models with magnetic resonance imaging and microtubule-associated protein-2 immunoreactivity. Magn. Reson. Imaging 2006, 24, 1087–1093.
21. Trotter, J.L.; Clark, H.B.; Collins, K.G.; Wegeschiede, C.L.; Scarpellini, J.D. Myelin proteolipid protein induces demyelinating disease in mice. J. Neurol. Sci. 1987, 79, 173–188.
22. Sheedlo, H.J.; Sprinkle, T.J. The distribution of 2′:3′-cyclic nucleotide 3′-phosphodiesterase (CNP) in the CNS of normal (+/+) and Shiverer (shi/shi) mice. J. Neurol. Sci. 1985, 67, 35–44.
23. Jauch, E.C.; Lindsell, C.; Broderick, J.; Fagan, S.C.; Tilley, B.C.; Levine, S.R.; NINDS rt-PA Stroke Study Group. Association of serial biochemical markers with acute ischemic stroke: The National Institute of Neurological Disorders and Stroke recombinant tissue plasminogen activator Stroke Study. Stroke 2006, 37, 2508–2513.
24. Osaka, H.; Wang, Y.L.; Takada, K.; Takizawa, S.; Setsuie, R.; Li, H.; Sato, Y.; Nishikawa, K.; Sun, Y.J.; Sakurai, M.; et al. Ubiquitin carboxy-terminal hydrolase L1 binds to and stabilizes monoubiquitin in neuron. Hum. Mol. Genet. 2003, 12, 1945–1958.
25. Erickson, H.S.; Albert, P.S.; Gillespie, J.W.; Rodriguez-Canales, J.; Marston Linehan, W.; Pinto, P.A.; Chuaqui, R.F.; Emmert-Buck, M.R. Quantitative RT-PCR gene expression analysis of laser microdissected tissue samples. Nat. Protoc. 2009, 4, 902–922.
26. Wang, H.; Qian, W.J.; Mottaz, H.M.; Clauss, T.R.; Anderson, D.J.; Moore, R.J.; Camp, D.G., 2nd.; Khan, A.H.; Sforza, D.M.; Pallavicini, M.; et al. Development and evaluation of a micro- and nano-scale proteomic sample preparation method. J. Proteome Res. 2005, 4, 2397–2403.
27. Sprung, R.W., Jr.; Brock, J.W.; Tanksley, J.P.; Li, M.; Washington, M.K.; Slebos, R.J.; Liebler, D.C. Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis. Mol. Cell. Proteomics 2009, 8, 1988–1998.
28. Lange, V.; Picotti, P.; Domon, B.; Aebersold, R. Selected reaction monitoring for quantitative proteomics: A tutorial. Mol. Syst. Biol. 2008, 4, 222.
29. MacLean, B.; Tomazela, D.M.; Shulman, N.; Chambers, M.; Finney, G.L.; Frewen, B.; Kern, R.; Tabb, D.L.; Liebler, D.C.; MacCoss, M.J. Skyline: An open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 2010, 26, 966–968.