Characteristics and their clinical relevance of respiratory syncytial virus types and genotypes circulating in Northern Italy in five consecutive winter seasons

PLoS ONE

Volumn 10, Issue 6, 2015, Pages

  Esposito, Susanna ^a   Piralla, Antonio ^b   Zampiero, Alberto ^a   Bianchini, Sonia ^a   Di Pietro, Giada ^a   Scala, Alessia ^a   Pinzani, Raffaella ^a   Fossali, Emilio ^c   Baldanti, Fausto ^b,d   Principi, Nicola ^a  

^a UNIVERSITY OF MILAN   (Italy)

^b FONDAZIONE IRCCS POLICLINICO SAN MATTEO   (Italy)

^c FONDAZIONE IRCCS CA GRANDA OSPEDALE MAGGIORE POLICLINICO   (Italy)

^d UNIVERSITY OF PAVIA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOASSAY; CHILD; CONTROLLED STUDY; DISEASE SEVERITY; FEMALE; GENOTYPE; HOSPITALIZATION; HUMAN; HUMAN RESPIRATORY SYNCYTIAL VIRUS; HUMAN RESPIRATORY SYNCYTIAL VIRUS A; HUMAN RESPIRATORY SYNCYTIAL VIRUS B; ITALY; LOWER RESPIRATORY TRACT INFECTION; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; REAL TIME POLYMERASE CHAIN REACTION; RESPIRATORY VIRUS PANEL FAST ASSAY; VIRUS STRAIN; WINTER; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENETICS; HOST PATHOGEN INTERACTION; INFANT; MOLECULAR GENETICS; NEWBORN; PHYSIOLOGY; PRESCHOOL CHILD; PREVALENCE; RESPIRATORY SYNCYTIAL VIRUS INFECTIONS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEASON; SPECIES DIFFERENCE; VIROLOGY;

RESPIRATORY SYNCYTIAL VIRUS; RICE STRIPE VIRUS;

COMPLEMENTARY DNA; VIRUS RNA;

CHILD, PRESCHOOL; DNA, COMPLEMENTARY; FEMALE; GENOTYPE; HOST-PATHOGEN INTERACTIONS; HUMANS; INFANT; INFANT, NEWBORN; ITALY; MALE; MOLECULAR SEQUENCE DATA; PHYLOGENY; PREVALENCE; RESPIRATORY SYNCYTIAL VIRUS INFECTIONS; RESPIRATORY SYNCYTIAL VIRUS, HUMAN; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SEASONS; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 84934987365     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0129369     Document Type: Article

References (48)

1. Borchers AT, Chang C, Gershwin ME, Gershwin LJ (2013) Respiratory syncytial virus - a comprehensive review. Clin Rev Allergy Immunol 45: 331-379. doi: 10.1007/s12016-013-8368-9 PMID: 23575961
2. Peret TC, Hall CB, Schnabel KC, Golub JA, Anderson LJ (1998) Circulation patterns of genetically distinct group A and B strains of human respiratory syncytial virus in a community. J Gen Virol 79: 2221-2229. PMID: 9747732
3. Peret TC, Hall CB, Hammond GW, Piedra PA, Storch GA, Sullender WM, et al. (2000) Circulation patterns of group A and B human respiratory syncytial virus genotypes in 5 communities in North America. J Infect Dis 181: 1891-1896. PMID: 10837167
4. Venter M, Madhi SA, Tiemessen CT, Schoub BD (2001) Genetic diversity and molecular epidemiology of respiratory syncytial virus over four consecutive seasons in South Africa: identification of new subgroup A and B genotypes. J Gen Virol 82: 2117-2124. PMID: 11514720
5. Shobugawa Y, Saito R, Sano Y, Zaraket H, Suzuki Y, Kumaki A, et al. (2009) Emerging genotypes of human respiratory syncytial virus subgroup A among patients in Japan. J Clin Microbiol 47: 2475-2482. doi: 10.1128/JCM.00115-09 PMID: 19553576
6. Eshaghi A, Duvvuri VR, Lai R, Nadarajah JT, Li A, Patel SN, et al. (2012) Genetic variability of human respiratory syncytial virus A strains circulating in Ontario: a novel genotype with a 72 nucleotide G gene duplication. PLoS One 2012; 7: e32807. doi: 10.1371/journal.pone.0032807 PMID: 22470426
7. Arnott A, Vong S, Mardy S, Chu S, Naughtin M, Sovann L, et al. (2011) A study of the genetic variability of human respiratory syncytial virus (HRSV) in Cambodia reveals the existence of a new HRSV group B genotype. J Clin Microbiol 49: 3504-3513. doi: 10.1128/JCM.01131-11 PMID: 21865418
8. Blanc A, Delfraro A, Frabasile S, Arbiza J (2005) Genotypes of respiratory syncytial virus group B identified in Uruguay. Arch Virol 150: 603-609. PMID: 15480858
9. Trento A, Viegas M, Galiano M, Videla C, Carballal G, Mistchenko AS, et al. (2006) Natural history of human respiratory syncytial virus inferred from phylogenetic analysis of the attachment (G) glycoprotein with a 60-nucleotide duplication. J Virol 80: 975-984. PMID: 16378999
10. Dapat IC, Shobugawa Y, Sano Y, Saito R, Sasaki A, Suzuki Y, et al. (2010) New genotypes within respiratory syncytial virus group B genotype BA in Niigata, Japan. J Clin Microbiol 48: 3423-3427. doi: 10.1128/JCM.00646-10 PMID: 20610675
11. Baek YH, Choi EH, Song MS, Pascua PNQ, Kwon HI, Park SJ, et al. (2012) Prevalence and genetic characterization of respiratory syncytial virus (RSV) in hospitalized children in Korea. Arch Virol 157: 1039-1050. doi: 10.1007/s00705-012-1267-1 PMID: 22402914
12. Khor CS, Sam IC, Hooi PS, Chan YF (2013) Displacement of predominant respiratory syncytial virus genotypes in Malaysia between 1989 and 2011. Infect Genet Evol 14: 357-360. doi: 10.1016/j.meegid.2012.12.017 PMID: 23305888
13. Auksornkitti V, Kamprasert N, Thongkomplew S, Suwannakarn K, Theamboonlers A, Samransamruajkij R, et al. (2014) Molecular characterization of human respiratory syncytial virus, 2010-2011: identification of genotype ON1 and a new subgroup B genotype in Thailand. Arch Virol 159: 499-507. doi: 10.1007/s00705-013-1773-9 PMID: 24068580
14. Rebuffo-Scheer C, Bose M, He J, Khaja S, Ulatowski M, Beck ET, et al. (2011) Whole genome sequencing and evolutionary analysis of human respiratory syncytial virus A and B from Milwaukee, WI 1998-2010. PLoS One 6: e25468. doi: 10.1371/journal.pone.0025468 PMID: 21998661
15. Katzov-Eckert H, Botosso VF, Neto EA, Zanotto PM (2012) Phylodynamics and dispersal of HRSV entails its permanence in the general population in between yearly outbreaks in children. PLoS One 2012; 7: e41953. doi: 10.1371/journal.pone.0041953 PMID: 23077477
16. Pierangeli A, Trotta D, Scagnolari C, Ferreri ML, Nicolai A, Midullla F, et al. (2014) Rapid spread of the novel respiratory syncytial virus A ON1 genotype, central Italy, 2011 to 2013. Euro Surveill 19 pii: 20843. PMID: 25011065
17. Tabatabai J, Prifert C, Pfeil J, Grulich-Henn J, Schnitzler P (2014) Novel respiratory syncytial virus (RSV) genotype ON1 predominates in Germany during winter season 2012-13. PLoS One 9: e109191. doi: 10.1371/journal.pone.0109191 PMID: 25290155
18. Agoti CN, Otieno JR, Gitahi CW, Cane PA, Nokes DJ (2014) Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya. Emerg Infect Dis 20: 950-959. doi: 10.3201/eid2006.131438 PMID: 24856417
19. Balmaks R, Ribakova I, Gardovska D, Kazaks A (2014) Molecular epidemiology of human respiratory syncytial virus over three consecutive seasons in Latvia. J Med Virol 86: 1971-1982. doi: 10.1002/jmv.23855 PMID: 24301088
20. Choudhary ML, Anand SP, Wadhwa BS, Chadha MS (2013) Genetic variability of human respiratory syncytial virus in Pune, Western India. Infect Genet Evol 20: 369-377. doi: 10.1016/j.meegid.2013.09.025 PMID: 24113083
21. Hirano E, Kobayashi M, Tsukagoshi H, Yoshida LM, Kuroda M, Noda M, et al. (2014) Molecular evolution of human respiratory syncytial virus attachment glycoprotein (G) gene of new genotype ON1 and ancestor NA1. Infect Genet Evol 28: 183-191. doi: 10.1016/j.meegid.2014.09.030 PMID: 25283803
22. Hall CB, Simo{combining double acute accent}es EA, Anderson LJ (2013) Clinical and epidemiologic features of respiratory syncytial virus. Curr Top Microbiol Immunol 372: 39-57. doi: 10.1007/978-3-642-38919-1-2 PMID: 24362683
23. Choi EH, Lee HJ, Chanock SJ (2013) Human genetics and respiratory syncytial virus disease: current findings and future approaches. Curr Top Microbiol Immunol 372: 121-137. doi: 10.1007/978-3-642-38919-1-6 PMID: 24362687
24. Esposito S, Molteni CG, Daleno C, Valzano A, Fossali E, Da Dalt L, et al. (2011) Clinical and socioeconomic impact of different types and subtypes of seasonal influenza viruses in children during influenza seasons 2007/2008 and 2008/2009. BMC Infect Dis 11: 271. doi: 10.1186/1471-2334-11-271 PMID: 21992699
25. Van Elden LJR, van Loon AM, Beek A van der Hendriksen KAW, Hoepelman AIM, van Kraaij MG, et al. (2003) Applicability of a real-time quantitative PCR assay for diagnosis of respiratory syncytial virus infection in immunocompromised adults. J Clin Microbiol 41: 4378-4381. PMID: 12958272
26. Sullender WM, Sun L, Anderson LJ (1993) Analysis of respiratory syncytial virus genetic variability with amplified cDNAs. J Clin Microbiol 31: 1224-1231. PMID: 8099086
27. Parveen S, Sullender WM, Fowler K, Lefkowitz EJ, Kapoor SK, Broor S (2006) Genetic variability in the G protein gene of group A and B respiratory syncytial viruses from India. J Clin Microbiol 44: 3055-3064. PMID: 16954227
28. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739. doi: 10.1093/molbev/msr121 PMID: 21546353
29. Delport W, Poon AF, Frost SD, Kosakovsky Pond SL (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26: 2455-2457. doi: 10.1093/bioinformatics/btq429 PMID: 20671151
30. Kosakovsky Pond SL, Frost SD (2005) Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22: 1208-1222. PMID: 15703242
31. Prifert C, Streng A, Krempl CD, Liese J, Weissbrich B (2013) Novel respiratory syncytial virus a genotype, Germany, 2011-2012. Emerg Infect Dis 19: 1029-1030. doi: 10.3201/eid1906.121582 PMID: 23735287
32. Tsukagoshi H, Yokoi H, Kobayashi M, Kushibuchi I, Okamoto-Nakagawa R, Yoshida A, et al. (2013) Genetic analysis of attachment glycoprotein (G) gene in new genotype ON1 of human respiratory syncytial virus detected in Japan. Microbiol Immunol 57: 655-659. doi: 10.1111/1348-0421.12075 PMID: 23750702
33. Ren L, Xia Q, Xiao Q, Zhou L, Zang N, Long X, et al. (2014) The genetic variability of glycoproteins among respiratory syncytial virus subtype A in China between 2009 and 2013. Infect Genet Evol 27: 339-347. doi: 10.1016/j.meegid.2014.07.030 PMID: 25109878
34. Kim YJ, Kim DW, Lee WJ, Yun MR, Lee HY, Lee HS, et al. (2014) Rapid replacement of human respiratory syncytial virus A with the ON1 genotype having 72 nucleotide duplication in G gene. Infect Genet Evol 26: 103-112. doi: 10.1016/j.meegid.2014.05.007 PMID: 24820343
35. Botosso VF, Zanotto PM, Ueda M, Arruda E, Gilio AE, Vieira SE, et al. (2009) Positive selection results in frequent reversible amino acid replacements in the G protein gene of human respiratory syncytial virus. PLoS Pathog 5: e1000254. doi: 10.1371/journal.ppat.1000254 PMID: 19119418
36. Tapia LI, Shaw CA, Aideyan LO, Jewell AM, Dawson BC, Haq TR, et al. (2014) Gene sequence variability of the three surface proteins of human respiratory syncytial virus (HRSV) in Texas PLoS One 9: e90786. doi: 10.1371/journal.pone.0090786 PMID: 24625544
37. Rueda P, Delgado T, Portela A, Melero JA, Garcia-Barreno B (1991) Premature stop codons in the G glycoprotein of human respiratory syncytial viruses resistant to neutralization by monoclonal antibodies. J Virol 65: 3374-3378. PMID: 2033675
38. Cui G, Zhu R, Qian Y, Deng J, Zhao L, Sun Y, et al. (2013) Genetic variation in attachment glycoprotein genes of human respiratory syncytial virus subgroups A and B in children in recent five consecutive years. PLoS One 8: e75020. doi: 10.1371/journal.pone.0075020 PMID: 24069376
39. Fodha I, Vabret A, Ghedira L, Seboui H, Chouchane S, Dewar J, et al. (2007) Respiratory syncytial virus infections in hospitalized infants: association between viral load, virus subgroup, and disease severity. J Med Virol 79: 1951-1958. PMID: 17935185
40. Paulus SC, Hirschfeld AF, Victor RE, Brunstein J, Thomas E, Turvey SE (2007) Common human Toll-like receptor 4 polymorphisms - role in susceptibility to respiratory syncytial virus infection and functional immunological relevance.Clin Immunol 123: 252-257. PMID: 17449325
41. Kaplan NM, Dove W, Abd-Eldayem SA, Abu-Zeid AF, Shamoon HE, Hart CA (2008) Molecular epidemiology and disease severity of respiratory syncytial virus in relation to other potential pathogens in children hospitalized with acute respiratory infection in Jordan. J Med Virol 80: 168-174. PMID: 18041044
42. McConnochie KM, Hall CB, Walsh EE, Roghmann KJ (1990) Variation in severity of respiratory syncytial virus infections with subtype. J Pediatr 117: 52-62 PMID: 2115082
43. Walsh EE, McConnochie KM, Long CE, Hall CB (1997) Severity of respiratory syncytial virus infection is related to virus strain. J Infect Dis 175: 814-820. PMID: 9086135
44. Gilca R, De Serres G, Tremblay M, Vachon ML, Leblanc E, Bergeron MG, et al. (2006) Distribution and clinical impact of human respiratory syncytial virus genotypes in hospitalized children over 2 winter seasons. J Infect Dis 193: 54-58. PMID: 16323132
45. Imaz MS, Sequeira MD, Videla C, Veronessi I, Cociglio R, Zerbini E, et al. (2000) Clinical and epidemiologic characteristics of respiratory syncytial virus subgroups A and B infections in Santa Fe, Argentina. J Med Virol 61: 76-80. PMID: 10745236
46. Hornsleth A, Klug B, Nir M, Johansen J, Hansen KS, Christensen LS, et al. (1998) Severity of respiratory syncytial virus disease related to type and genotype of virus and to cytokine values in nasopharyngeal secretions. Pediatr Infect Dis J 17: 1114-1121. PMID: 9877358
47. Wu W, Macdonald A, Hiscox JA, Barr JN (2012) Different NF-kappaB activation characteristics of human respiratory syncytial virus subgroups A and B. Microb Pathog 52: 184-191. doi: 10.1016/j.micpath.2011.12.006 PMID: 22212641
48. Panayiotou C, Richter J, Koliou M, Kalogirou N, Georgiou E, Christodoulou C. (2014) Epidemiology of respiratory syncytial virus in children in Cyprus during three consecutive winter seasons (2010-2013): age distribution, seasonality and association between prevalent genotypes and disease severity. Epidemiol Infect 142: 2406-2411. doi: 10.1017/S0950268814000028 PMID: 24476750