Molecular characterization of human respiratory syncytial virus, 2010-2011: Identification of genotype ON1 and a new subgroup B genotype in Thailand

Archives of Virology

Volumn 159, Issue 3, 2014, Pages 499-507

  Auksornkitti, Vichtavat ^a   Kamprasert, Nichaphat ^a   Thongkomplew, Siwanat ^a   Suwannakarn, Kamol ^a   Theamboonlers, Apiradee ^a   Samransamruajkij, Rujipat ^a   Poovorawan, Yong ^a  

^a CHULALONGKORN UNIVERSITY   (Thailand)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ADOLESCENT; ARTICLE; CHILD; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; FEMALE; GENETICS; GENOTYPE; HUMAN; INFANT; ISOLATION AND PURIFICATION; MALE; MOLECULAR EPIDEMIOLOGY; MOLECULAR GENETICS; NEWBORN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRESCHOOL CHILD; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; RESPIRATORY SYNCYTIAL VIRUS INFECTION; RETROSPECTIVE STUDY; THAILAND; VIROLOGY;

ADOLESCENT; CHILD; CHILD, PRESCHOOL; CLUSTER ANALYSIS; FEMALE; GENOTYPE; HUMANS; INFANT; INFANT, NEWBORN; MALE; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGENY; RESPIRATORY SYNCYTIAL VIRUS INFECTIONS; RESPIRATORY SYNCYTIAL VIRUS, HUMAN; RETROSPECTIVE STUDIES; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; THAILAND;

EID: 84896845121     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-013-1773-9     Document Type: Article

References (40)

1. Karron RA (2008) Respiratory syncytial virus and parainfluenza virus vaccines. In: Plotkin SA, Orenstein WA, Offit PA (eds) vaccines, 5th edn. Saunders-Elsevier, Philadelphia, pp 1283-1293.
2. Collins PL, Chanock RM, Murphy BR (2001) Respiratory syncytial virus. In: Knip DM, Hoeley P M (ed) Fields virology. Lippincott Williams and Wilkins, Philadelphia, pp 1443-1484.
3. Hall CB, Weinberg GA, Iwane MK, Blumkin AK, Edwards KM, Staat MA, Auinger P, Griffin MR, Poehiling KA, Erdman D, Grijalva CG, Zhu Y, Szilagyi P (2009) The burden of respiratory syncytial virus infection in young children. N Engl J Med 360(6): 588-598.
4. Groothuis JR, Hoopes JM, Jessie VG (2011) Prevention of serious respiratory syncytial virus-related illness. I: disease pathogenesis and early attempts at prevention. Adv Ther 28(2): 91-109.
5. Hurwitz JL (2011) Respiratory syncytial virus vaccine development. Expert Rev Vaccines 10(10): 1415-1433.
6. Levine S, Klaiber-Franco R, Paradiso PR (1987) Demonstration that glycoprotein G is the attachment protein of respiratory syncytial virus. J Gen Virol 68(9): 2521-2524.
7. Walsh EE, Hruska J (1983) Monoclonal antibodies to respiratory syncytial virus proteins: identification of the fusion protein. J Virol 47(1): 171-177.
8. Mufson MA, Orvell C, Rafner B, Norrby E (1985) Two distinct subtypes of human respiratory syncytial virus. J GenVirol 66(10): 2111-2124.
9. Anderson LJ, Hierholzer JC, Tsou C, Hendry RM, Fernie BF, Stone Y, McIntosh K (1985) Antigenic characterization of respiratory syncytial virus strains with monoclonal antibodies. J Infect Dis 151(4): 626-633.
10. Cane PA (2001) Molecular epidemiology of respiratory syncytial virus. Rev Med Virol 11(2): 103-116.
11. Cristina J, López JA, Albo C, García-Barreno B, García J, Melero JA, Portela A (1990) Analysis of genetic variability in human respiratory syncytial virus by the RNase A mismatch cleavage method: subtype divergence and heterogeneity. Virology 174(1): 126-134.
12. Peret TC, Hall CB, Schnabel KC, Golub JA, Anderson LJ (1998) Circulation patterns of genetically distinct group A and B strains of human respiratory syncytial virus in a community. J Gen Virol 79(9): 2221-2229.
13. Peret TC, Hall CB, Hammond GW, Piedra PA, Storch GA, Sullender WM, Tsou C, Anderson LJ (2000) Circulation patterns of group A and B human respiratory syncytial virus genotypes in 5 communities in North America. J Infect Dis 181(6): 1891-1896.
14. Venter M, Madhi SA, Tiemessen CT, Schoub BD (2001) Genetic diversity and molecular epidemiology of respiratory syncytial virus over four consecutive seasons in South Africa: identification of new subgroup A and B genotypes. J Gen Virol 82(9): 2117-2124.
15. Shobugawa Y, Saito R, Sano Y, Zaraket H, Suzuki Y, Kumaki A, Dapat I, Oguma T, Yamaguchi M, Suzuki H (2009) Emerging genotypes of human respiratory syncytial virus subgroup A among patients in Japan. J Clin Microbiol 47(8): 2475-2482.
16. Eshaghi A, Duwuri VR, Lai R, Nadarajah JT, Li A, Patel SN, Low DE, Gubbay JB (2012) Genetic variability of human respiratory syncytial virus A strains circulating in Ontario: a novel genotype with a 72 nucleotide G gene duplication. PLoS One 7(3): e32807.
17. Arnott A, Vong S, Mardy S, Chu S, Naughtin M, Sovann L, Buecher C, Beauté J, Rith S, Borand L, Asgari N, Frutos R, Guillard B, Touch S, Deubel V, Buchy P (2011) A study of the genetic variability of human respiratory syncytial virus (HRSV) in Cambodia reveals the existence of a new HRSV group B genotype. J Clin Microbiol 49(10): 3504-3513.
18. Blanc A, Delfraro A, Frabasile S, Arbiza J (2005) Genotypes of respiratory syncytial virus group B identified in Uruguay. Arch Virol 150(3): 603-609.
19. Trento A, Galiano M, Videla C, Carballal G, García-Barreno B, Merlero JA, Palomo C (2003) Major changes in the G protein of human respiratory syncytial virus isolates introduced by a duplication of 60 nucleotides. J Gen Virol 84(11): 3115-3120.
20. Trento A, Viegas M, Galiano M, Videla C, Carballal G, Mistchenko AS, Melero JA (2006) Natural history of human respiratory syncytial virus inferred from phylogenetic analysis of the attachment (G) glycoprotein with a 60-nucleotide duplication. J Virol 80(2): 975-984.
21. Dapat IC, Shobugawa Y, Sano Y, Saito R, Sasaki A, Suzuki Y, Kumaki A, Zaraket H, Dapat C, Oguma T, Yamaguchi M, Suzuki H (2010) New genotypes within respiratory syncytial virus group B genotype BA in Niigata. Japan. J Clin Microbiol 48(9): 3423-3427.
22. Wertz GW, Collins PL, Huang Y, Gruber C, Levine S, Ball LA (1985) Nucleotide sequence of the G protein gene of human respiratory syncytial virus reveals an unusual type of viral membrane protein. Proc Natl Acad Sci USA 82(12): 4075-4079.
23. Johnson PR, Spriggs MK, Olmsted RA, Collins PL (1987) The G glycoprotein of human respiratory syncytial viruses of subgroups A and B: Extensive sequence divergence between antigenically related proteins. Proc Natl Acad Sci USA 84(16): 5625-5629.
24. Cane PA, Matthew DA, Pringle CR (1991) Identification of variable domains of the attachment (G) protein of subgroup A respiratory syncytial viruses. J Gen virol 72(9): 2091-2096.
25. Sullender WM, Mufson MA, Anderson LJ, Wertz GW (1991) Genetic diversity of the attachment protein of subgroup B respiratory syncytial viruses. J Virol 65(10): 5425-5434.
26. Cane PA, Pringle CR (1995) Evolution of subgroup A respiratory syncytial virus: evidence for progressive accumulation of amino acid changes in the attachment protein. J Virol 69(5): 2918-2925.
27. Melero JA, Garcia-Barreno B, Martinez I, Pringle CR, Cane PA (1997) Antigenic structure, evolution and immunobiology of human respiratory syncytial virus attachment (G) protein. J Gen Virol 78(10): 2411-2418.
28. McCullers JA, Saito T (2003) Iverson AR (2004) Multiple genotypes of influenza B virus circulated between 1979 and. J Virol 78(23): 12817-12828.
29. Yamashita M, Krystal M, Fitch WM, Palese P (1988) Influenza B virus evolution: co-circulating lineages and comparison of evolutionary pattern with those of influenza A and C viruses. Virology 163(1): 112-122.
30. Siritantikorn S, Puthavathana P, Suwanjutha S, Chantarojanasiri T, Sunakorn P, Ratanadilok Na Phuket T, Nawanopparatsakul S, Teeyapaiboonsilpa P, Taveepvoradej S, Pengmesri J, Pongpate S (2002) Acute viral lower respiratory infections in children in a rural community in Thailand. J Med Assoc Thai 85(4): 1167-1175.
31. Suwanjutha S, Sunakorn P, Chantarojanasiri T, Siritantikorn S, Nawanoparatkul S, Rattanadilok Na Bhuket T, Teeyapaiboonsilpa P, Preutthipan A, Sareebutr W, Puthavathana P (2002) Respiratory syncytial virus-associated lower respiratory tract infection in under-5-year-old children in a rural community of central Thailand, a population-based study. J Med Assoc Thai 85(4): 1111-1119.
32. Fry AM, Chittaganpitch M, Baggett HC, Peret TC, Dare RK, Sawatwong P, Thamthitiwat S, Areerat P, Sanasuttipun W, Fischer J, Maloney SA, Erdman DD, Olsen SJ (2010) The burden of hospitalized lower respiratory tract infection due to respiratory syncytial virus in rural Thailand. PLoS One 5(11): e15098.
33. Samransamruajkit R, Lekhanont P, Sritippayawan S, Prapphal N, Deelodejanawong J, Bhattarakosol P, Poovorawan Y (2003) The occurrence and clinical presentations of RSV subtype in acute bronchiolitis and viral pneumonia among hospitalized infants and young children. 11th Asian congress of Pediatrics.
34. Boonyasuppayakorn S, Kowitdamrong E, Bhattarakosol P (2010) Molecular and demographic analysis of respiratory syncytial virus infection in patients admitted to King Chulalongkorn Memorial Hospital, Thailand, 2007. Influenza Other Respi Viruses 4(5): 313-323.
35. Deng J, Zhu R, Quian Y, Zhoa L, Wang F (2006) Sequence analysis of G glycoprotein of human respiratory syncytial virus subtype B strains isolated from children with acute respiratory infections in Beijing, China in years 2000-2004. Chin J Microbiol Immunol 26: 1-5. http://europepmc. org/abstract/CBA/606348/reload=0;jsessionid=gYT0lP4lo67Q4yvlXxw4. 16. Accessed 16 February 2013 (Abstract).
36. Olsen SJ, Thamthitiwat S, Chantra S, Chittaganpitch M, Fry AM, Simmerman JM, Baggett HC, Peret TC, Erdman D, Benson R, Talkington D, Thacker L, Tondella ML, Winchell J, Fields B, Nicholson WL, Maloney S, Peruski LF, Ungchusak K, Sawanpanyalert P, Dowell SF (2010) Incidence of respiratory pathogens in persons hospitalized with pneumonia in two provinces in Thailand. Epidemiol Infect 138(12): 1811-1822.
37. Yoshida LM, Suzuki M, Yamamoto T, Nguyen HA, Nguyen CD, Nguyen AT, Oishi K, Vu TD, Le TH, Le MQ, Yanai H, Kilgore PE, Dang DA, Ariyoshi K (2010) Viral pathogens associated with acute respiratory infections in central Vietnamese children. Pediatr Infect Dis 29(1): 75-77.
38. Climatological Center (2011) Annual weather summary of Thailand in 2011. Meteorological Development Bureau, Thai Meteorological Department. http://www. tmd. go. th/programs%5Cuploads%5CyearlySummary%5CAnnual2011_up. pdf. Accessed 16 February 20.
39. Valley-Omar Z, Muloiwa R, Hu NC, Eley B, Hsiao NY (2013) Novel respiratory syncytial virus subtype ON1 among children, Cape Town. S Afr Emerg Infect Dis. doi: 10. 3201/eid1904. 121465.
40. Lee WJ, Kim YJ, Kim DW, Lee HS, Lee HY, Kim K (2012) Complete genome sequence of human respiratory syncytial virus genotype A with a 72-nucleotide duplication in the attachment protein G gene. J Virol 86(24): 13810-13811.