메뉴 건너뛰기




Volumn 26, Issue , 2014, Pages 103-112

Rapid replacement of human respiratory syncytial virus A with the ON1 genotype having 72 nucleotide duplication in G gene

Author keywords

Attachment G gene; Diversity; Duplication; Evolution; Human respiratory syncytial virus (HRSV)

Indexed keywords

AMINO ACID SUBSTITUTION; ARTICLE; CONTROLLED STUDY; G GENE; GENE DUPLICATION; GENE EXPRESSION; GENE IDENTIFICATION; GENE INSERTION; GENE LOCATION; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; MOLECULAR EVOLUTION; MUTATIONAL ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; RESPIRATORY SYNCYTIAL PNEUMOVIRUS A GENOTYPE ON1; SOUTH KOREA; VIRUS GENE; VIRUS STRAIN; AMINO ACID SEQUENCE; CHEMISTRY; CHILD; CLASSIFICATION; FEMALE; GENETIC SELECTION; GENETICS; GENOTYPE; HISTORY; HUMAN; HUMAN RESPIRATORY SYNCYTIAL VIRUS; IMMUNOLOGY; INFANT; ISOLATION AND PURIFICATION; MALE; MOLECULAR GENETICS; MUTATION; PRESCHOOL CHILD; PREVALENCE; RESPIRATORY SYNCYTIAL VIRUS INFECTIONS; SEASON; SEQUENCE ALIGNMENT; VIROLOGY;

EID: 84901791050     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2014.05.007     Document Type: Article
Times cited : (56)

References (53)
  • 1
    • 77956827156 scopus 로고    scopus 로고
    • Intrapatient variation of the respiratory syncytial virus attachment protein gene
    • Agoti C.N., Mbisa J.L., Bett A., Medley G.F., Nokes D.J., Cane P.A. Intrapatient variation of the respiratory syncytial virus attachment protein gene. J. Virol. 2010, 84(19):10425-10428.
    • (2010) J. Virol. , vol.84 , Issue.19 , pp. 10425-10428
    • Agoti, C.N.1    Mbisa, J.L.2    Bett, A.3    Medley, G.F.4    Nokes, D.J.5    Cane, P.A.6
  • 2
    • 84901765596 scopus 로고    scopus 로고
    • Molecular characterization of human respiratory syncytial virus, 2010-2011: identification of genotype ON1 and a new subgroup B genotype in Thailand
    • Epub ahead of print
    • Auksornkitti V., Kamprasert N., Thongkomplew S., Suwannakarn K., Theamboonlers A., Samransamruajkij R., Poovorawan Y. Molecular characterization of human respiratory syncytial virus, 2010-2011: identification of genotype ON1 and a new subgroup B genotype in Thailand. Arch. Virol. 2013, Epub ahead of print.
    • (2013) Arch. Virol.
    • Auksornkitti, V.1    Kamprasert, N.2    Thongkomplew, S.3    Suwannakarn, K.4    Theamboonlers, A.5    Samransamruajkij, R.6    Poovorawan, Y.7
  • 4
    • 84908162478 scopus 로고    scopus 로고
    • Molecular epidemiology of human respiratory syncytial virus over three consecutive seasons in Latvia
    • Balmaks R., Ribakova I., Gardovska D., Kazaks A. Molecular epidemiology of human respiratory syncytial virus over three consecutive seasons in Latvia. J. Med. Virol. 2013, 10.1002/jmv.23855.
    • (2013) J. Med. Virol.
    • Balmaks, R.1    Ribakova, I.2    Gardovska, D.3    Kazaks, A.4
  • 7
    • 79956033123 scopus 로고    scopus 로고
    • Current progress on development of respiratory syncytial virus vaccine
    • Chang J. Current progress on development of respiratory syncytial virus vaccine. BMB Rep. 2011, 44(4):232-237.
    • (2011) BMB Rep. , vol.44 , Issue.4 , pp. 232-237
    • Chang, J.1
  • 8
    • 84874091610 scopus 로고    scopus 로고
    • Respiratory viruses in neonates hospitalized with acute lower respiratory tract infections
    • Cho H.J., Shim S.Y., Son D.W., Sun Y.H., Tchah H., Jeon I.S. Respiratory viruses in neonates hospitalized with acute lower respiratory tract infections. Pediatr. Int. 2013, 55:49-53.
    • (2013) Pediatr. Int. , vol.55 , pp. 49-53
    • Cho, H.J.1    Shim, S.Y.2    Son, D.W.3    Sun, Y.H.4    Tchah, H.5    Jeon, I.S.6
  • 9
    • 0034048163 scopus 로고    scopus 로고
    • Genetic diversity and molecular epidemiology of the G protein of subgroup A and B of respiratory syncytial viruses isolated over 9 consecutive epidemics in Korea
    • Choi E.H., Lee H.J. Genetic diversity and molecular epidemiology of the G protein of subgroup A and B of respiratory syncytial viruses isolated over 9 consecutive epidemics in Korea. J. Infect. Dis. 2000, 181(5):1547-1556.
    • (2000) J. Infect. Dis. , vol.181 , Issue.5 , pp. 1547-1556
    • Choi, E.H.1    Lee, H.J.2
  • 10
    • 39749139538 scopus 로고    scopus 로고
    • Viral and host factors in human respiratory syncytial virus pathogenesis
    • Collins P.L., Graham B.S. Viral and host factors in human respiratory syncytial virus pathogenesis. J. Virol. 2008, 82(5):2040-2055.
    • (2008) J. Virol. , vol.82 , Issue.5 , pp. 2040-2055
    • Collins, P.L.1    Graham, B.S.2
  • 11
    • 84884267366 scopus 로고    scopus 로고
    • Genetic variation in attachment glycoprotein genes of human respiratory syncytial virus subgroups A and B in children in recent five consecutive years
    • Cui G., Zhu R., Qian Y., Deng J., Zhao L., Sun Y., Wang F. Genetic variation in attachment glycoprotein genes of human respiratory syncytial virus subgroups A and B in children in recent five consecutive years. PLoS One 2013, 8(9):e75020.
    • (2013) PLoS One , vol.8 , Issue.9
    • Cui, G.1    Zhu, R.2    Qian, Y.3    Deng, J.4    Zhao, L.5    Sun, Y.6    Wang, F.7
  • 12
    • 48249138975 scopus 로고    scopus 로고
    • Genetic variability in the G protein gene of human respiratory syncytial virus isolated from the Campinas metropolitan region
    • da Silva L.H., Spilki F.R., Riccetto A.G., de Almeida R.S., Baracat E.C., Arns C.W. Genetic variability in the G protein gene of human respiratory syncytial virus isolated from the Campinas metropolitan region. Braz. J. Med. Virol. 2008, 80(9):1653-1660.
    • (2008) Braz. J. Med. Virol. , vol.80 , Issue.9 , pp. 1653-1660
    • da Silva, L.H.1    Spilki, F.R.2    Riccetto, A.G.3    de Almeida, R.S.4    Baracat, E.C.5    Arns, C.W.6
  • 14
    • 47649130438 scopus 로고    scopus 로고
    • Predicting linear B-cell epitopes using string kernels
    • El-Manzalawy Y., Dobbs D., Honavar V. Predicting linear B-cell epitopes using string kernels. J. Mol. Recognit. 2008, 21(4):243-255.
    • (2008) J. Mol. Recognit. , vol.21 , Issue.4 , pp. 243-255
    • El-Manzalawy, Y.1    Dobbs, D.2    Honavar, V.3
  • 15
    • 84859024155 scopus 로고    scopus 로고
    • Genetic variability of human respiratory syncytial virus A strains circulating in Ontario: a novel genotype with a 72 nucleotide G gene duplication
    • Eshaghi A., Duvvuri V.R., Lai R., Nadarajah J.T., Li A., Patel S.N., Low D.E., Gubbay J.B. Genetic variability of human respiratory syncytial virus A strains circulating in Ontario: a novel genotype with a 72 nucleotide G gene duplication. PLoS One 2012, 7(3):e32807.
    • (2012) PLoS One , vol.7 , Issue.3
    • Eshaghi, A.1    Duvvuri, V.R.2    Lai, R.3    Nadarajah, J.T.4    Li, A.5    Patel, S.N.6    Low, D.E.7    Gubbay, J.B.8
  • 16
    • 78650566298 scopus 로고    scopus 로고
    • Biological challenges and technological opportunities for respiratory syncytial virus vaccine development
    • Graham B.S. Biological challenges and technological opportunities for respiratory syncytial virus vaccine development. Immunol. Rev. 2011, 239(1):149-166.
    • (2011) Immunol. Rev. , vol.239 , Issue.1 , pp. 149-166
    • Graham, B.S.1
  • 18
    • 77949601825 scopus 로고    scopus 로고
    • CD-HIT Suite: a web server for clustering and comparing biological sequences
    • Huang Y., Niu B., Gao Y., Fu L., Li W. CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinformatics 2010, 26(5):680-682.
    • (2010) Bioinformatics , vol.26 , Issue.5 , pp. 680-682
    • Huang, Y.1    Niu, B.2    Gao, Y.3    Fu, L.4    Li, W.5
  • 19
    • 0023392666 scopus 로고
    • The G glycoprotein of human respiratory syncytial viruses of subgroups A and B: extensive sequence divergence between antigenically related proteins
    • Johnson P.R., Spriggs M.K., Olmsted R.A., Collins P.L. The G glycoprotein of human respiratory syncytial viruses of subgroups A and B: extensive sequence divergence between antigenically related proteins. Proc. Natl. Acad. Sci. U.S.A. 1987, 84:5625-5629.
    • (1987) Proc. Natl. Acad. Sci. U.S.A. , vol.84 , pp. 5625-5629
    • Johnson, P.R.1    Spriggs, M.K.2    Olmsted, R.A.3    Collins, P.L.4
  • 20
    • 84887704638 scopus 로고    scopus 로고
    • Advances in and the potential of vaccines for respiratory syncytial virus
    • Jorquera P.A., Oakley K.E., Tripp R.A. Advances in and the potential of vaccines for respiratory syncytial virus. Expert Rev. Respir. Med. 2013, 7(4):411-427.
    • (2013) Expert Rev. Respir. Med. , vol.7 , Issue.4 , pp. 411-427
    • Jorquera, P.A.1    Oakley, K.E.2    Tripp, R.A.3
  • 21
    • 84873322800 scopus 로고    scopus 로고
    • Displacement of predominant respiratory syncytial virus genotypes in Malaysia between 1989 and 2011
    • Khor C.S., Sam I.C., Hooi P.S., Chan Y.F. Displacement of predominant respiratory syncytial virus genotypes in Malaysia between 1989 and 2011. Infect. Genet. Evol. 2013, 14:357-360.
    • (2013) Infect. Genet. Evol. , vol.14 , pp. 357-360
    • Khor, C.S.1    Sam, I.C.2    Hooi, P.S.3    Chan, Y.F.4
  • 23
    • 33751104704 scopus 로고    scopus 로고
    • Improved method for predicting linear B-cell epitopes
    • Larsen J.E.P., Lund O., Nielsen M. Improved method for predicting linear B-cell epitopes. Immunome Res. 2006, 2:2.
    • (2006) Immunome Res. , vol.2 , pp. 2
    • Larsen, J.E.P.1    Lund, O.2    Nielsen, M.3
  • 24
    • 84870699334 scopus 로고    scopus 로고
    • Complete genome sequence of human respiratory syncytial virus genotype A with a 72-nucleotide duplication in the attachment protein G gene
    • Lee W.J., Kim Y.J., Kim D.W., Lee H.S., Lee H.Y., Kim K. Complete genome sequence of human respiratory syncytial virus genotype A with a 72-nucleotide duplication in the attachment protein G gene. J. Virol. 2012, 86(24):13810-13811.
    • (2012) J. Virol. , vol.86 , Issue.24 , pp. 13810-13811
    • Lee, W.J.1    Kim, Y.J.2    Kim, D.W.3    Lee, H.S.4    Lee, H.Y.5    Kim, K.6
  • 25
    • 0030731670 scopus 로고    scopus 로고
    • Antigenic structure, evolution and immunobiology of human respiratory syncytial virus attachment (G) protein
    • Melero J.A., Garcia-Barreno B., Martinez I., Pringle C.R., Cane P.A. Antigenic structure, evolution and immunobiology of human respiratory syncytial virus attachment (G) protein. J. Gen. Virol. 1997, 78:2411-2418.
    • (1997) J. Gen. Virol. , vol.78 , pp. 2411-2418
    • Melero, J.A.1    Garcia-Barreno, B.2    Martinez, I.3    Pringle, C.R.4    Cane, P.A.5
  • 26
    • 84930484987 scopus 로고    scopus 로고
    • Severe lower respiratory tract infection in early infancy and pneumonia hospitalizations among children
    • Munywoki P.K., Ohuma E.O., Ngama M., Bauni E., Scott J.A., Nokes D.J. Severe lower respiratory tract infection in early infancy and pneumonia hospitalizations among children. Kenya Emerg. Infect. Dis. 2013, 19(2):223-239.
    • (2013) Kenya Emerg. Infect. Dis. , vol.19 , Issue.2 , pp. 223-239
    • Munywoki, P.K.1    Ohuma, E.O.2    Ngama, M.3    Bauni, E.4    Scott, J.A.5    Nokes, D.J.6
  • 27
    • 84864015632 scopus 로고    scopus 로고
    • Antibody response to the central unglycosylated region of the respiratory syncytial virus attachment protein in mice
    • Murata Y., Catherman S.C. Antibody response to the central unglycosylated region of the respiratory syncytial virus attachment protein in mice. Vaccine 2012, 30(36):5382-5388.
    • (2012) Vaccine , vol.30 , Issue.36 , pp. 5382-5388
    • Murata, Y.1    Catherman, S.C.2
  • 29
    • 33645957106 scopus 로고    scopus 로고
    • Genetic diversity among respiratory syncytial viruses that have caused repeated infections in children from rural India
    • Parveen S., Broor S., Kapoor S.K., Fowler K., Sullender W.M. Genetic diversity among respiratory syncytial viruses that have caused repeated infections in children from rural India. J. Med. Virol. 2006, 78:659-665.
    • (2006) J. Med. Virol. , vol.78 , pp. 659-665
    • Parveen, S.1    Broor, S.2    Kapoor, S.K.3    Fowler, K.4    Sullender, W.M.5
  • 30
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 32
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice P., Longden I., Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet. 2000, 16(6):276-277.
    • (2000) Trends Genet. , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 34
    • 84873719906 scopus 로고    scopus 로고
    • Respiratory syncytial virus: current progress in vaccine development
    • Rudraraju R., Jones B.G., Sealy R., Surman S.L., Hurwitz J.L. Respiratory syncytial virus: current progress in vaccine development. Viruses 2013, 5(2):577-594.
    • (2013) Viruses , vol.5 , Issue.2 , pp. 577-594
    • Rudraraju, R.1    Jones, B.G.2    Sealy, R.3    Surman, S.L.4    Hurwitz, J.L.5
  • 35
    • 84883019295 scopus 로고    scopus 로고
    • Kinetics of the neutralizing antibody response to respiratory syncytial virus infections in a birth cohort
    • Sande C.J., Mutunga M.N., Okiro E.A., Medley G.F., Cane P.A., Nokes D.J. Kinetics of the neutralizing antibody response to respiratory syncytial virus infections in a birth cohort. J. Med. Virol. 2013, 85:2020-2025.
    • (2013) J. Med. Virol. , vol.85 , pp. 2020-2025
    • Sande, C.J.1    Mutunga, M.N.2    Okiro, E.A.3    Medley, G.F.4    Cane, P.A.5    Nokes, D.J.6
  • 38
    • 84877146650 scopus 로고    scopus 로고
    • Improved method for linear B-cell epitope prediction using antigen's primary sequence
    • Singh H., Ansari H.R., Raghava G.P.S. Improved method for linear B-cell epitope prediction using antigen's primary sequence. PLoS One 2013, 8(5):e62216.
    • (2013) PLoS One , vol.8 , Issue.5
    • Singh, H.1    Ansari, H.R.2    Raghava, G.P.S.3
  • 39
    • 0033985296 scopus 로고    scopus 로고
    • Respiratory syncytial virus genetic and antigenic diversity
    • Sullender W.M. Respiratory syncytial virus genetic and antigenic diversity. Clin. Microbiol. Rev. 2000, 13(1):1-15.
    • (2000) Clin. Microbiol. Rev. , vol.13 , Issue.1 , pp. 1-15
    • Sullender, W.M.1
  • 40
    • 0025946770 scopus 로고
    • Genetic diversity of the attachment protein of subgroup B respiratory syncytial viruses
    • Sullender W.M., Mufson M.A., Anderson L.J., Wertz G.W. Genetic diversity of the attachment protein of subgroup B respiratory syncytial viruses. J. Virol. 1991, 65(10):5425-5434.
    • (1991) J. Virol. , vol.65 , Issue.10 , pp. 5425-5434
    • Sullender, W.M.1    Mufson, M.A.2    Anderson, L.J.3    Wertz, G.W.4
  • 42
    • 84880256565 scopus 로고    scopus 로고
    • The comparative genomics of human respiratory syncytial virus subgroups A and B: genetic variability and molecular evolutionary dynamics
    • Tan L., Coenjaerts F.E., Houspie L., Viveen M.C., van Bleek G.M., Wiertz E.J., Martin D.P., Lemey P. The comparative genomics of human respiratory syncytial virus subgroups A and B: genetic variability and molecular evolutionary dynamics. J. Virol. 2013, 87(14):8213-8226.
    • (2013) J. Virol. , vol.87 , Issue.14 , pp. 8213-8226
    • Tan, L.1    Coenjaerts, F.E.2    Houspie, L.3    Viveen, M.C.4    van Bleek, G.M.5    Wiertz, E.J.6    Martin, D.P.7    Lemey, P.8
  • 43
    • 77954530543 scopus 로고    scopus 로고
    • Ten years of global evolution of the human respiratory syncytial virus BA genotype with a 60-nucleotide duplication in the G protein gene
    • Trento A., Casas I., Calderon A., Garcia-Garcia M.L., Calvo C., Perez-Brena P., Melero J.A. Ten years of global evolution of the human respiratory syncytial virus BA genotype with a 60-nucleotide duplication in the G protein gene. J. Virol. 2010, 84(15):7500-7512.
    • (2010) J. Virol. , vol.84 , Issue.15 , pp. 7500-7512
    • Trento, A.1    Casas, I.2    Calderon, A.3    Garcia-Garcia, M.L.4    Calvo, C.5    Perez-Brena, P.6    Melero, J.A.7
  • 44
    • 30344436375 scopus 로고    scopus 로고
    • Natural history of human respiratory syncytial virus inferred from phylogenetic analysis of the attachment (G) glycoprotein with a 60-nucleotide duplication
    • Trento A., Viegas M., Galiano M., Videla C., Carballal G., Mistchenko A.S., Melero J.A. Natural history of human respiratory syncytial virus inferred from phylogenetic analysis of the attachment (G) glycoprotein with a 60-nucleotide duplication. J. Virol. 2006, 80(2):975-984.
    • (2006) J. Virol. , vol.80 , Issue.2 , pp. 975-984
    • Trento, A.1    Viegas, M.2    Galiano, M.3    Videla, C.4    Carballal, G.5    Mistchenko, A.S.6    Melero, J.A.7
  • 46
    • 80052282838 scopus 로고    scopus 로고
    • Replacement of previously circulating respiratory syncytial virus subtype B strains with the BA genotype in South Africa
    • van Niekert S., Venter M. Replacement of previously circulating respiratory syncytial virus subtype B strains with the BA genotype in South Africa. J. Virol. 2011, 85(17):8789-8797.
    • (2011) J. Virol. , vol.85 , Issue.17 , pp. 8789-8797
    • van Niekert, S.1    Venter, M.2
  • 47
    • 79951562634 scopus 로고    scopus 로고
    • Palivizumab for immunoprophylaxis of respiratory syncytial virus (RSV) bronchiolitis in high-risk infants and young children: a systematic review and additional economic modelling of subgroup analyses
    • Wang D., Bayliss S., Meads C. Palivizumab for immunoprophylaxis of respiratory syncytial virus (RSV) bronchiolitis in high-risk infants and young children: a systematic review and additional economic modelling of subgroup analyses. Health Technol. Assess. 2011, 15(5):1-124.
    • (2011) Health Technol. Assess. , vol.15 , Issue.5 , pp. 1-124
    • Wang, D.1    Bayliss, S.2    Meads, C.3
  • 48
    • 80053513645 scopus 로고    scopus 로고
    • Prediction of B-cell linear epitopes with a combination of support vector machine classification and amino acid propensity identification
    • Wang H.W., Lin Y.C., Pai T.W., Chang H.T. Prediction of B-cell linear epitopes with a combination of support vector machine classification and amino acid propensity identification. J. Biomed. Biotechnol. 2011, 432830.
    • (2011) J. Biomed. Biotechnol. , pp. 432830
    • Wang, H.W.1    Lin, Y.C.2    Pai, T.W.3    Chang, H.T.4
  • 49
    • 84901758609 scopus 로고    scopus 로고
    • World Health Organization (WHO). Initiative for Vaccine Research (IVR). Respiratory syncytial virus and parainfluenza virus. Disease burden. Geneva: The Organization.
    • World Health Organization (WHO). 2009. Initiative for Vaccine Research (IVR). Respiratory syncytial virus and parainfluenza virus. Disease burden. Geneva: The Organization.
    • (2009)
  • 50
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007, 24:1586-1591.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 52
    • 77950510235 scopus 로고    scopus 로고
    • Genetic variability of respiratory syncytial viruses (RSV) prevalent in southwestern China from 2006 to 2009: Emergence of subgroup B and A RSV as dominant strains
    • Zhang Z.Y., Du L.N., Chen X., Zhao Y., Liu E.M., Yang X.Q., Zhao X.D. Genetic variability of respiratory syncytial viruses (RSV) prevalent in southwestern China from 2006 to 2009: Emergence of subgroup B and A RSV as dominant strains. J. Clin. Virol. 2010, 48(4):1201-1207.
    • (2010) J. Clin. Virol. , vol.48 , Issue.4 , pp. 1201-1207
    • Zhang, Z.Y.1    Du, L.N.2    Chen, X.3    Zhao, Y.4    Liu, E.M.5    Yang, X.Q.6    Zhao, X.D.7
  • 53
    • 84864462812 scopus 로고    scopus 로고
    • EvolView, an online tool for visualizing, annotating and managing phylogenetic trees
    • Web Server issue
    • Zhang H., Gao S., Lercher M.J., Hu S., Chen W.H. EvolView, an online tool for visualizing, annotating and managing phylogenetic trees. Nucleic Acids Res. 2012, 40:W569-572. Web Server issue.
    • (2012) Nucleic Acids Res. , vol.40
    • Zhang, H.1    Gao, S.2    Lercher, M.J.3    Hu, S.4    Chen, W.H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.