Label-free quantitative proteomics of embryogenic and non-embryogenic callus during sugarcane somatic embryogenesis

PLoS ONE

Volumn 10, Issue 6, 2015, Pages

  Heringer, Angelo Schuabb ^a   Barroso, Tatiana ^a   Macedo, Amanda Ferreira ^b   Santa Catarina, Claudete ^a   Souza, Gustavo Henrique Martins Ferreira ^c   Floh, Eny Iochevet Segal ^b   De Souza Filho, Gonçalo Apolinário ^a   Silveira, Vanildo ^a  

^a UNIVERSIDADE ESTADUAL DO NORTE FLUMINENSE DARCY RIBEIRO   (Brazil)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

^c WATERS CORPORATION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATED CARBON; CALLOSE SYNTHASE 1; CATALASE; DESICCATION RELATED PROTEIN; NITRIC OXIDE SYNTHASE; OXIDOREDUCTASE; SECRETED PROTEIN; UNCLASSIFIED DRUG; VEGETABLE PROTEIN; PLANT PROTEIN; PROTEOME;

ARTICLE; CALLUS (PLANT); CALLUS CULTURE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; CULTURE MEDIUM; EMBRYO; EMBRYOGENIC CALLUS; NON EMBRYOGENIC CALLUS; NONHUMAN; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEIN PROCESSING; PROTEOMICS; SOMATIC EMBRYOGENESIS; SUGARCANE; COMPARATIVE STUDY; EMBRYOLOGY; GROWTH, DEVELOPMENT AND AGING; MATRIX-ASSISTED LASER DESORPTION-IONIZATION MASS SPECTROMETRY; METABOLISM; PLANT SEED; PROCEDURES;

PLANT PROTEINS; PLANT SOMATIC EMBRYOGENESIS TECHNIQUES; PROTEOME; PROTEOMICS; SACCHARUM; SEEDS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 84934959344     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0127803     Document Type: Article

References (103)

1. Arruda P. Perspective of the sugarcane industry in Brazil. Tropical Plant Biology. 2011; 4(1):3-8.
2. FAO. FAOSTAT - Crop production: Food and Agriculture Organization of the United Nations - Statistics Division (FAOSTAT); 2014 [cited 2014 12-03-2014]. Available: http://faostat3.fao.org/browse/Q/∗/E.
3. USDA. Sugar: world production supply and distribution: United States Department of Agriculture (USDA); 2012 [20/05/2013]. Available: http://www.fas.usda.gov/psdonline/circulars/sugar.pdf.
4. Ragauskas AJ, Williams CK, Davison BH, Britovsek G, Cairney J, Eckert CA, et al. The path forward for biofuels and biomaterials. Science. 2006; 311(5760):484-9. PMID: 16439654
5. Waclawovsky AJ, Sato PM, Lembke CG, Moore PH, Souza GM. Sugarcane for bioenergy production: an assessment of yield and regulation of sucrose content. Plant Biotechnol J. 2010; 8(3):263-76. doi: 10.1111/j.1467-7652.2009.00491.x PMID: 20388126
6. Snyman SJ, Meyer GM, Koch AC, Banasiak M, Watt MP. Applications of in vitro culture systems for commercial sugarcane production and improvement. In Vitro Cellular & Developmental Biology-Plant. 2011; 47(2):234-49.
7. Butterfield M, D'Hont A, Berding N, editors. The sugarcane genome: a synthesis of current understanding, and lessons for breeding and biotechnology. Proceedings of African Sugarcane Technology Association; 2001.
8. Butterfield M, Thomas D, editors. Sucrose, yield and disease resistance characteristics of sugarcane varieties under test in the SASEX selection programme. Proceedings of African Sugarcane Technology Association; 1996.
9. Lakshmanan P, Geijskes RJ, Aitken KS, Grof CLP, Bonnett GD, Smith GR. Sugarcane biotechnology: the challenges and opportunities. In Vitro Cellular & Developmental Biology-Plant. 2005; 41(4):345-63.
10. Arruda P. Genetically modified sugarcane for bioenergy generation. Curr Opin Biotechnol. 2012; 23(3):315-22. doi: 10.1016/j.copbio.2011.10.012 PMID: 22093808
11. Tautorus TE, Fowke LC, Dunstan DI. Somatic embryogenesis in conifers. Canadian Journal of Botany-Revue Canadienne De Botanique. 1991; 69(9):1873-99.
12. Verdeil J-L, Alemanno L, Niemenak N, Tranbarger TJ. Pluripotent versus totipotent plant stem cells: dependence versus autonomy? Trends Plant Sci. 2007; 12(6):245-52. PMID: 17499544
13. Silveira V, Vita AM, Macedo AF, Dias MFR, Floh EIS, Santa-Catarina C. Morphological and polyamine content changes in embryogenic and non-embryogenic callus of sugarcane. Plant Cell Tiss Org Cult. 2013; 114(3):351-64.
14. Guerra M, Torres A, Teixeira J, Torres A, Caldas L, Buso J. Embriogênese somática e sementes sintéticas. Cultura de tecidos e transformação genética de plantas. 1999.
15. Steinmacher DA, Clement CR, Guerra MP. Somatic embryogenesis from immature peach palm inflorescence explants: towards development of an efficient protocol. Plant Cell Tiss Org Cult. 2007; 89(1):15-22.
16. Mordhorst AP, Toonen MAJ, deVries SC. Plant embryogenesis. Crit Rev Plant Sci. 1997; 16(6):535-76.
17. Mahdavi-Darvari F, Noor NM, Ismanizan I. Epigenetic regulation and gene markers as signals of early somatic embryogenesis. Plant Cell Tiss Org Cult. 2014:1-16.
18. Marsoni M, Bracale M, Espen L, Prinsi B, Negri AS, Vannini C. Proteomic analysis of somatic embryogenesis in Vitis vinifera. Plant Cell Rep. 2008; 27(2):347-56. PMID: 17874111
19. Agrawal GK, Pedreschi R, Barkla BJ, Bindschedler LV, Cramer R, Sarkar A, et al. Translational plant proteomics: a perspective. Journal of Proteomics. 2012; 75(15):4588-601. doi: 10.1016/j.jprot.2012.03.055 PMID: 22516432
20. Chen EI, Hewel J, Felding-Habermann B, Yates JR. Large scale protein profiling by combination of protein fractionation and multidimensional protein identification technology (MudPIT). Molecular & Cellular Proteomics. 2006; 5(1):53-6.
21. Washburn MP, Wolters D, Yates JR. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol. 2001; 19(3):242-7. PMID: 11231557
22. Wu C, Siems WF, Klasmeier J, Hill HH. Separation of isomeric peptides using electrospray ionization/high-resolution ion mobility spectrometry. Anal Chem. 2000; 72(2):391-5. PMID: 10658335
23. Ruotolo BT, Giles K, Campuzano I, Sandercock AM, Bateman RH, Robinson CV. Evidence for macromolecular protein rings in the absence of bulk water. Science. 2005; 310(5754):1658-61. PMID: 16293722
24. Lalli PM, Corilo YE, Fasciotti M, Riccio MF, Sa GF, Daroda RJ, et al. Baseline resolution of isomers by traveling wave ion mobility mass spectrometry: investigating the effects of polarizable drift gases and ionic charge distribution. J Mass Spectrom. 2013; 48(9):989-97. doi: 10.1002/jms.3245 PMID: 24078238
25. Silva JC, Denny R, Dorschel CA, Gorenstein M, Kass IJ, Li G-Z, et al. Quantitative proteomic analysis by accurate mass retention time pairs. Anal Chem. 2005; 77(7):2187-200. PMID: 15801753
26. Geromanos SJ, Vissers JP, Silva JC, Dorschel CA, Li GZ, Gorenstein MV, et al. The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS. Proteomics. 2009; 9(6):1683-95. doi: 10.1002/pmic.200800562 PMID: 19294628
27. Chakraborty AB, Berger SJ, Gebler JC. Use of an integrated MS-multiplexed MS/MS data acquisition strategy for high-coverage peptide mapping studies. Rapid communications in mass spectrometry. 2007; 21(5):730-44. PMID: 17279597
28. Murashige T, Skoog F. A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plant. 1962; 15(3):473-97.
29. Balbuena TS, Silveira V, Junqueira M, Dias LLC, Santa-Catarina C, Shevchenko A, et al. Changes in the 2-DE protein profile during zygotic embryogenesis in the Brazilian Pine (Araucaria angustifolia). Journal of Proteomics. 2009; 72(3):337-52. PMID: 19367732
30. Luge T, Kube M, Freiwald A, Meierhofer D, Seemüller E, Sauer S. Transcriptomics assisted proteomic analysis of Nicotiana occidentalis infected by Candidatus Phytoplasma mali strain AT. Proteomics. 2014; 14(16):1882-9. doi: 10.1002/pmic.201300551 PMID: 24920314
31. Murad AM, Souza GH, Garcia JS, Rech EL. Detection and expression analysis of recombinant proteins in plant-derived complex mixtures using nanoUPLC-MSE. Journal of separation science. 2011; 34(19):2618-30. doi: 10.1002/jssc.201100238 PMID: 21898799
32. Yu Y-Q, Gilar M, Lee PJ, Bouvier ES, Gebler JC. Enzyme-friendly, mass spectrometry-compatible surfactant for in-solution enzymatic digestion of proteins. Anal Chem. 2003; 75(21):6023-8. PMID: 14588046
33. Giles K, Williams JP, Campuzano I. Enhancements in travelling wave ion mobility resolution. Rapid Communications in Mass Spectrometry. 2011; 25(11):1559-66. doi: 10.1002/rcm.5013 PMID: 21594930
34. Silva JC, Gorenstein MV, Li G-Z, Vissers JP, Geromanos SJ. Absolute quantification of proteins by LCMSE a virtue of parallel MS acquisition. Molecular & Cellular Proteomics. 2006; 5(1):144-56.
35. Li GZ, Vissers JP, Silva JC, Golick D, Gorenstein MV, Geromanos SJ. Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures. Proteomics. 2009; 9(6):1696-719. doi: 10.1002/pmic.200800564 PMID: 19294629
36. Thomas TD. The role of activated charcoal in plant tissue culture. Biotechnol Adv. 2008; 26(6):618-31. doi: 10.1016/j.biotechadv.2008.08.003 PMID: 18786626
37. Ming R, Liu S-C, Lin Y-R, Da Silva J, Wilson W, Braga D, et al. Detailed alignment of Saccharum and Sorghum chromosomes: comparative organization of closely related diploid and polyploid genomes. Genetics. 1998; 150(4):1663-82. PMID: 9832541
38. Fehér A. Somatic embryogenesis-stress-induced remodeling of plant cell fate. Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms. 2014.
39. Vale EdM, Heringer AS, Barroso T, Ferreira ATdS, da Costa MN, Perales JEA, et al. Comparative proteomic analysis of somatic embryos maturation in Carica papaya L. Proteome Science. 2014; 12(1):37.
40. Ikeda-Iwai M, Umehara M, Satoh S, Kamada H. Stress-induced somatic embryogenesis in vegetative tissues of Arabidopsis thaliana. The Plant Journal. 2003; 34(1):107-14. PMID: 12662313
41. Baba AI, Nogueira F, Pinheiro CB, Brasil JN, Jereissati ES, Jucá TL, et al. Proteome analysis of secondary somatic embryogenesis in cassava (Manihot esculenta). Plant Sci. 2008; 175(5):717-23.
42. Zhang J, Ma H, Chen S, Ji M, Perl A, Kovacs L, et al. Stress response proteins' differential expression in embryogenic and non-embryogenic callus of Vitis vinifera L. cv. Cabernet Sauvignon - a proteomic approach. Plant Sci. 2009; 177(2):103-13.
43. He W, Parker R. Functions of Lsm proteins in mRNA degradation and splicing. Curr Opin Cell Biol. 2000; 12(3):346-50. PMID: 10801455
44. Rose A, Meier I. Scaffolds, levers, rods and springs: diverse cellular functions of long coiled-coil proteins. Cellular and Molecular Life Sciences CMLS. 2004; 61(16):1996-2009. PMID: 15316650
45. Peterman TK, Ohol YM, McReynolds LJ, Luna EJ. Patellin1, a novel Sec14-like protein, localizes to the cell plate and binds phosphoinositides. Plant Physiol. 2004; 136(2):3080-94. PMID: 15466235
46. Smulders MJM, Klerk GJ. Epigenetics in plant tissue culture. Plant Growth Regulation. 2011; 63(2):137-46.
47. Qi Y, Yamauchi Y, Ling J, Kawano N, Li D, Tanaka K. The submergence-induced gene OsCTP in rice (Oryza sativa L.) is similar to Escherichia coli cation transport protein ChaC. Plant Sci. 2005; 168(1):15-22.
48. Gillaspy GE. Signaling and the polyphosphoinositide phosphatases from plants. Lipid signaling in plants: Springer; 2010. p. 117-30.
49. Shikanai T, Müller-Moulé P, Munekage Y, Niyogi KK, Pilon M. PAA1, a P-type ATPase of Arabidopsis, functions in copper transport in chloroplasts. The Plant Cell Online. 2003; 15(6):1333-46. PMID: 12782727
50. Sugiharto B, Ermawati N, Mori H, Aoki K, Yonekura-Sakakibara K, Yamaya T, et al. Identification and characterization of a gene encoding drought-inducible protein localizing in the bundle sheath cell of sugarcane. Plant and cell physiology. 2002; 43(3):350-4. PMID: 11917090
51. Zhang J, John UP, Wang Y, Li X, Gunawardana D, Polotnianka RM, et al. Targeted mining of drought stress-responsive genes from EST resources in Cleistogenes songorica. J Plant Physiol. 2011; 168(15):1844-51. doi: 10.1016/j.jplph.2011.04.005 PMID: 21684035
52. Moon H-K, Lee H, Paek K-Y, Park S-Y. Osmotic stress and strong 2, 4-D shock stimulate somatic-to-embryogenic transition in Kalopanax septemlobus (Thunb.) Koidz. Acta Physiologiae Plantarum. 2015; 37(1):1-9.
53. Tsuwamoto R, Fukuoka H, Takahata Y. Identification and characterization of genes expressed in early embryogenesis from microspores of Brassica napus. Planta. 2007; 225(3):641-52. PMID: 16977456
54. Malik MR, Wang F, Dirpaul JM, Zhou N, Polowick PL, Ferrie AM, et al. Transcript profiling and identification of molecular markers for early microspore embryogenesis in Brassica napus. Plant Physiol. 2007; 144(1):134-54. PMID: 17384168
55. Hattori J, Boutilier K, Campagne ML, Miki B. A conserved BURP domain defines a novel group of plant proteins with unusual primary structures. Molecular and General Genetics MGG. 1998; 259(4):424-8. PMID: 9790599
56. Martinelli L, Scienza A, Villa P, Deponti P, Gianazza E. Enzyme markers for somatic embryogenesis in Vitis. J Plant Physiol. 1993; 141(4):476-81.
57. Kessell R, Carr A. The effect of dissolved oxygen concentration on growth and differentiation of carrot (Daucus carota) tissue. J Exp Bot. 1972; 23(4):996-1007.
58. Heringer AS, Steinmacher DA, Fraga HP, Vieira LN, Montagna T, Quinga LA, et al. Improved high-efficiency protocol for somatic embryogenesis in Peach Palm (Bactris gasipaes Kunth) using RITA temporary immersion system. Scientia Horticulturae. 2014; 179:284-92.
59. Linder P, Owttrim GW. Plant RNA helicases: linking aberrant and silencing RNA. Trends Plant Sci. 2009; 14(6):344-52. doi: 10.1016/j.tplants.2009.03.007 PMID: 19446493
60. Kobayashi K, Otegui MS, Krishnakumar S, Mindrinos M, Zambryski P. INCREASED SIZE EXCLUSION LIMIT2 encodes a putative DEVH box RNA helicase involved in plasmodesmata function during Arabidopsis embryogenesis. The Plant Cell Online. 2007; 19(6):1885-97. PMID: 17601829
61. Guo F-Q, Okamoto M, Crawford NM. Identification of a plant nitric oxide synthase gene involved in hormonal signaling. Science. 2003; 302(5642):100-3. PMID: 14526079
62. Otvos K, Pasternak TP, Miskolczi P, Domoki M, Dorjgotov D, Szucs A, et al. Nitric oxide is required for, and promotes auxin-mediated activation of, cell division and embryogenic cell formation but does not influence cell cycle progression in alfalfa cell cultures. Plant J. 2005; 43(6):849-60. PMID: 16146524
63. Silveira V, Santa-Catarina C, Tun NN, Scherer GFE, Handro W, Guerra MP, et al. Polyamine effects on the endogenous polyamine contents, nitric oxide release, growth and differentiation of embryogenic suspension cultures of Araucaria angustifolia (Bert.) O. Ktze. Plant Sci. 2006; 171(1):91-8. PMID: 16771985
64. Jacobs AK, Lipka V, Burton RA, Panstruga R, Strizhov N, Schulze-Lefert P, et al. An Arabidopsis callose synthase, GSL5, is required for wound and papillary callose formation. The Plant Cell Online. 2003; 15(11):2503-13. PMID: 14555698
65. Hong Z, Delauney AJ, Verma DPS. A cell plate-specific callose synthase and its interaction with phragmoplastin. The Plant Cell Online. 2001; 13(4):755-68. PMID: 11283334
66. Martzivanou M, Hampp R. Hyper-gravity effects on the Arabidopsis transcriptome. Physiol Plant. 2003; 118(2):221-31. PMID: 14552351
67. Zhou S, Wei S, Boone B, Levy S. Microarray analysis of genes affected by salt stress in tomato. African Journal of Environmental Science and Technology. 2007; 1(2):014-26.
68. Dubois T, Guedira M, Dubois J, Vasseur J. Direct somatic embryogenesis in roots of Cichorium: is callose an early marker? Ann Bot. 1990; 65(5):539-45.
69. Wise MJ. LEAping to conclusions: a computational reanalysis of late embryogenesis abundant proteins and their possible roles. BMC Bioinformatics. 2003; 4(1):52.
70. Bartels D, Hanke C, Schneider K, Michel D, Salamini F. A desiccation-related Elip-like gene from the resurrection plant Craterostigma plantagineum is regulated by light and ABA. The EMBO journal. 1992; 11(8):2771. PMID: 1386305
71. Alamillo J, Roncarati R, Heino P, Velasco R, Nelson D, Elster R, et al. Molecular analysis of desiccation tolerance in barley embryos and in the resurrection plant Craterostigma plantagineum. Agronomie. 1994; 14(3):161-7.
72. Kotake T, Hojo S, Yamaguchi D, Aohara T, Konishi T, Tsumuraya Y. Properties and physiological functions of UDP-sugar pyrophosphorylase in Arabidopsis. Biosci, Biotechnol, Biochem. 2007; 71(3):761-71. PMID: 17341835
73. Litterer LA, Plaisance KL, Schnurr JA, Storey KK, Jung HJG, Gronwald JW, et al. Biosynthesis of UDP-glucuronic acid in developing soybean embryos: possible role of UDP-sugar pyrophosphorylase. Physiol Plant. 2006; 128(2):200-11.
74. Smeekens S, Ma J, Hanson J, Rolland F. Sugar signals and molecular networks controlling plant growth. Current opinion in plant biology. 2010; 13(3):273-8. doi: 10.1016/j.pbi.2009.12.003 PMID: 20093067
75. Kubeš M, Drážná N, Konrádová H, Lipavská H. Robust carbohydrate dynamics based on sucrose resynthesis in developing Norway spruce somatic embryos at variable sugar supply. In Vitro Cellular & Developmental Biology-Plant. 2014; 50(1):45-57.
76. Basset GJ, Quinlivan EP, Gregory JF, Hanson AD. Folate synthesis and metabolism in plants and prospects for biofortification. Crop Sci. 2005; 45(2):449-53.
77. Ravanel S, Cherest H, Jabrin S, Grunwald D, Surdin-Kerjan Y, Douce R, et al. Tetrahydrofolate biosynthesis in plants: molecular and functional characterization of dihydrofolate synthetase and three isoforms of folylpolyglutamate synthetase in Arabidopsis thaliana. Proceedings of the National Academy of Sciences. 2001; 98(26):15360-5. PMID: 11752472
78. Lu C-C, Currah L, Peffley EB. Somatic embryogenesis and plant regeneration in diploid Allium fistulosum x A. cepa F1 hybrid onions. Plant Cell Rep. 1989; 7(8):696-700. doi: 10.1007/BF00272064 PMID: 24240465
79. Herrmann KM. The shikimate pathway: early steps in the biosynthesis of aromatic compounds. The Plant Cell. 1995; 7(7):907. PMID: 12242393
80. Tzin V, Malitsky S, Zvi MMB, Bedair M, Sumner L, Aharoni A, et al. Expression of a bacterial feedback-insensitive 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase of the shikimate pathway in Arabidopsis elucidates potential metabolic bottlenecks between primary and secondary metabolism. New Phytol. 2012; 194(2):430-9. doi: 10.1111/j.1469-8137.2012.04052.x PMID: 22296303
81. Rose AB, Casselman AL, Last RL. A phosphoribosylanthranilate transferase gene is defective in blue fluorescent Arabidopsis thaliana tryptophan mutants. Plant Physiol. 1992; 100(2):582-92. PMID: 16653032
82. Cohen JD, Slovin JP, Hendrickson AM. Two genetically discrete pathways convert tryptophan to auxin: more redundancy in auxin biosynthesis. Trends Plant Sci. 2003; 8(5):197-9. PMID: 12758033
83. Jimenez VM. Involvement of plant hormones and plant growth regulators on in vitro somatic embryogenesis. Plant Growth Regulation. 2005; 47(2-3):91-110.
84. Ravilious GE, Jez JM. Nucleotide binding site communication in Arabidopsis thaliana adenosine 5′-phosphosulfate kinase. J Biol Chem. 2012; 287(36):30385-94. doi: 10.1074/jbc.M112.387001 PMID: 22810229
85. Klein M, Papenbrock J. The multi-protein family of Arabidopsis sulphotransferases and their relatives in other plant species. J Exp Bot. 2004; 55(404):1809-20. PMID: 15234990
86. Müssig C. Brassinosteroid-Promoted Growth. Plant Biol. 2005; 7(2):110-7. PMID: 15822006
87. Santiago J, Henzler C, Hothorn M. Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases. Science. 2013; 341(6148):889-92. doi: 10.1126/science.1242468 PMID: 23929946
88. Mhamdi A, Queval G, Chaouch S, Vanderauwera S, Van Breusegem F, Noctor G. Catalase function in plants: a focus on Arabidopsis mutants as stress-mimic models. J Exp Bot. 2010; 61(15):4197-220. doi: 10.1093/jxb/erq282 PMID: 20876333
89. Heyneke E, Luschin-Ebengreuth N, Krajcer I, Wolkinger V, Müller M, Zechmann B. Dynamic compartment specific changes in glutathione and ascorbate levels in Arabidopsis plants exposed to different light intensities. BMC Plant Biol. 2013; 13(1):104.
90. Matsumura T, Tabayashi N, Kamagata Y, Souma C, Saruyama H. Wheat catalase expressed in transgenic rice can improve tolerance against low temperature stress. Physiol Plant. 2002; 116(3):317-27.
91. Ahsan N, Lee S-H, Lee D-G, Lee H, Lee SW, Bahk JD, et al. Physiological and protein profiles alternation of germinating rice seedlings exposed to acute cadmium toxicity. C R Biol. 2007; 330(10):735-46. PMID: 17905393
92. Shimizu T, Jikumaru Y, Okada A, Okada K, Koga J, Umemura K, et al. Effects of a bile acid elicitor, cholic acid, on the biosynthesis of diterpenoid phytoalexins in suspension-cultured rice cells. Phytochemistry. 2008; 69(4):973-81. PMID: 18045629
93. Poon S, Heath RL, Clarke AE. A chimeric arabinogalactan protein promotes somatic embryogenesis in cotton cell culture. Plant Physiol. 2012; 160(2):684-95. doi: 10.1104/pp.112.203075 PMID: 22858635
94. de Carvalho Silva R, Carmo LST, Luis ZG, Silva LP, Scherwinski-Pereira JE, Mehta A. Proteomic identification of differentially expressed proteins during the acquisition of somatic embryogenesis in oil palm (Elaeis guineensis Jacq.). Journal of Proteomics. 2014; 104:112-27. doi: 10.1016/j.jprot.2014.03.013 PMID: 24675181
95. Steinmacher DA, Saare-Surminski K, Lieberei R. Arabinogalactan proteins and the extracellular matrix surface network during peach palm somatic embryogenesis. Physiol Plant. 2012; 146(3):336-49. doi: 10.1111/j.1399-3054.2012.01642.x PMID: 22574975
96. Dowler S, Deak M, Kular G, Downes C. Identification of pleckstrin-homology-domain-containing proteins with novel phosphoinositide-binding specificities. Biochem J. 2000; 351:19-31. PMID: 11001876
97. Prouse MB, Campbell MM. The interaction between MYB proteins and their target DNA binding sites. Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms. 2012; 1819(1):67-77. doi: 10.1016/j.bbagrm.2011.10.010 PMID: 22067744
98. Dubos C, Stracke R, Grotewold E, Weisshaar B, Martin C, Lepiniec L. MYB transcription factors in Arabidopsis. Trends Plant Sci. 2010; 15(10):573-81. doi: 10.1016/j.tplants.2010.06.005 PMID: 20674465
99. Vierstra RD. Protein degradation in plants. Annu Rev Plant Biol. 1993; 44(1):385-410.
100. Petrak J, Ivanek R, Toman O, Cmejla R, Cmejlova J, Vyoral D, et al. Deja vu in proteomics. A hit parade of repeatedly identified differentially expressed proteins. Proteomics. 2008; 8(9):1744-9. doi: 10.1002/pmic.200700919 PMID: 18442176
101. Patnaik D, Khurana P. Germins and germin like proteins: an overview. Indian J Exp Biol. 2001; 39(3):191-200. PMID: 11495276
102. Luan S. The CBL-CIPK network in plant calcium signaling. Trends Plant Sci. 2009; 14(1):37-42. doi: 10.1016/j.tplants.2008.10.005 PMID: 19054707
103. Batistič O, Kudla J. Plant calcineurin B-like proteins and their interacting protein kinases. Biochimica et Biophysica Acta (BBA)-Molecular Cell Research. 2009; 1793(6):985-92. doi: 10.1016/j.bbamcr.2008.10.006 PMID: 19022300