-
1
-
-
77949773491
-
Photoreceptor degeneration: Genetic and mechanistic dissection of a complex trait
-
Wright AF, Chakarova CF, Abd El-Aziz MM, Bhattacharya SS (2010) Photoreceptor degeneration: Genetic and mechanistic dissection of a complex trait. Nat Rev Genet 11(4):273-284.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.4
, pp. 273-284
-
-
Wright, A.F.1
Chakarova, C.F.2
Abd El-Aziz, M.M.3
Bhattacharya, S.S.4
-
2
-
-
76749165706
-
Prediction of microRNAs affecting mRNA expression during retinal development
-
Arora A, et al. (2010) Prediction of microRNAs affecting mRNA expression during retinal development. BMC Dev Biol 10:1.
-
(2010)
BMC Dev Biol
, vol.10
, pp. 1
-
-
Arora, A.1
-
3
-
-
33847746661
-
Identification and characterization of microRNAs expressed in the mouse eye
-
Karali M, Peluso I, Marigo V, Banfi S (2007) Identification and characterization of microRNAs expressed in the mouse eye. Invest Ophthalmol Vis Sci 48(2):509-515.
-
(2007)
Invest Ophthalmol Vis Sci
, vol.48
, Issue.2
, pp. 509-515
-
-
Karali, M.1
Peluso, I.2
Marigo, V.3
Banfi, S.4
-
4
-
-
78650300755
-
miRNeye: A microRNA expression atlas of the mouse eye
-
Karali M, et al. (2010) miRNeye: A microRNA expression atlas of the mouse eye. BMC Genomics 11:715.
-
(2010)
BMC Genomics
, vol.11
, pp. 715
-
-
Karali, M.1
-
5
-
-
33750404987
-
MicroRNAs of the mammalian eye display distinct and overlapping tissue specificity
-
Ryan DG, Oliveira-Fernandes M, Lavker RM (2006) MicroRNAs of the mammalian eye display distinct and overlapping tissue specificity. Mol Vis 12:1175-1184.
-
(2006)
Mol Vis
, vol.12
, pp. 1175-1184
-
-
Ryan, D.G.1
Oliveira-Fernandes, M.2
Lavker, R.M.3
-
6
-
-
44949139634
-
Dicer inactivation leads to progressive functional and structural degeneration of the mouse retina
-
Damiani D, et al. (2008) Dicer inactivation leads to progressive functional and structural degeneration of the mouse retina. J Neurosci 28(19):4878-4887.
-
(2008)
J Neurosci
, vol.28
, Issue.19
, pp. 4878-4887
-
-
Damiani, D.1
-
7
-
-
84879509740
-
Conserved microRNA pathway regulates developmental timing of retinal neurogenesis
-
La Torre A, Georgi S, Reh TA (2013) Conserved microRNA pathway regulates developmental timing of retinal neurogenesis. Proc Natl Acad Sci USA 110(26):E2362-E2370.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.26
, pp. E2362-E2370
-
-
La Torre, A.1
Georgi, S.2
Reh, T.A.3
-
8
-
-
84887057344
-
Non-coding RNAs in the development of sensory organs and related diseases
-
Conte I, Banfi S, Bovolenta P (2013) Non-coding RNAs in the development of sensory organs and related diseases. Cell Mol Life Sci 70(21):4141-4155.
-
(2013)
Cell Mol Life Sci
, vol.70
, Issue.21
, pp. 4141-4155
-
-
Conte, I.1
Banfi, S.2
Bovolenta, P.3
-
9
-
-
84876421879
-
miR-204 targeting of Ankrd13A controls both mesenchymal neural crest and lens cell migration
-
Avellino R, et al. (2013) miR-204 targeting of Ankrd13A controls both mesenchymal neural crest and lens cell migration. PLoS ONE 8(4):e61099.
-
(2013)
PLoS ONE
, vol.8
, Issue.4
-
-
Avellino, R.1
-
10
-
-
77957284622
-
miR-204 is required for lens and retinal development via Meis2 targeting
-
Conte I, et al. (2010) miR-204 is required for lens and retinal development via Meis2 targeting. Proc Natl Acad Sci USA 107(35):15491-15496.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.35
, pp. 15491-15496
-
-
Conte, I.1
-
11
-
-
84875981176
-
Pax6 regulates gene expression in the vertebrate lens through miR-204
-
Shaham O, et al. (2013) Pax6 regulates gene expression in the vertebrate lens through miR-204. PLoS Genet 9(3):e1003357.
-
(2013)
PLoS Genet
, vol.9
, Issue.3
-
-
Shaham, O.1
-
12
-
-
38549150275
-
miRBase: Tools for microRNA genomics
-
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ (2008) miRBase: Tools for microRNA genomics. Nucleic Acids Res 36(Database issue):D154-D158.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.DATABASE ISSUE
, pp. D154-D158
-
-
Griffiths-Jones, S.1
Saini, H.K.2
Van Dongen, S.3
Enright, A.J.4
-
13
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31(13):3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
-
14
-
-
33744520104
-
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex
-
Han J, et al. (2006) Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. Cell 125(5):887-901.
-
(2006)
Cell
, vol.125
, Issue.5
, pp. 887-901
-
-
Han, J.1
-
15
-
-
84856078759
-
A novel mutation within the MIR96 gene causes non-syndromic inherited hearing loss in an Italian family by altering pre-miRNA processing
-
Soldà G, et al. (2012) A novel mutation within the MIR96 gene causes non-syndromic inherited hearing loss in an Italian family by altering pre-miRNA processing. Hum Mol Genet 21(3):577-585.
-
(2012)
Hum Mol Genet
, vol.21
, Issue.3
, pp. 577-585
-
-
Soldà, G.1
-
16
-
-
0029872876
-
ARPE-19, a human retinal pigment epithelial cell line with differentiated properties
-
Dunn KC, Aotaki-Keen AE, Putkey FR, Hjelmeland LM (1996) ARPE-19, a human retinal pigment epithelial cell line with differentiated properties. Exp Eye Res 62(2):155-169.
-
(1996)
Exp Eye Res
, vol.62
, Issue.2
, pp. 155-169
-
-
Dunn, K.C.1
Aotaki-Keen, A.E.2
Putkey, F.R.3
Hjelmeland, L.M.4
-
17
-
-
77955630249
-
MicroRNA expression in human retinal pigment epithelial (ARPE-19) cells: Increased expression of microRNA-9 by N-(4-hydroxyphenyl)retinamide
-
Kutty RK, et al. (2010) MicroRNA expression in human retinal pigment epithelial (ARPE-19) cells: Increased expression of microRNA-9 by N-(4-hydroxyphenyl)retinamide. Mol Vis 16:1475-1486.
-
(2010)
Mol Vis
, vol.16
, pp. 1475-1486
-
-
Kutty, R.K.1
-
18
-
-
84874333522
-
A novel microdeletion syndrome at 9q21.13 characterised by mental retardation, speech delay, epilepsy and characteristic facial features
-
Boudry-Labis E, et al. (2013) A novel microdeletion syndrome at 9q21.13 characterised by mental retardation, speech delay, epilepsy and characteristic facial features. Eur J Med Genet 56(3):163-170.
-
(2013)
Eur J Med Genet
, vol.56
, Issue.3
, pp. 163-170
-
-
Boudry-Labis, E.1
-
19
-
-
84866331549
-
Application of array comparative genomic hybridization in 102 patients with epilepsy and additional neurodevelopmental disorders
-
Bartnik M, et al. (2012) Application of array comparative genomic hybridization in 102 patients with epilepsy and additional neurodevelopmental disorders. Am J Med Genet B Neuropsychiatr Genet 159B(7):760-771.
-
(2012)
Am J Med Genet B Neuropsychiatr Genet
, vol.159 B
, Issue.7
, pp. 760-771
-
-
Bartnik, M.1
-
20
-
-
84890774313
-
Novel interstitial 2.6 Mb deletion on 9q21 associated with multiple congenital anomalies
-
Pua HH, et al. (2014) Novel interstitial 2.6 Mb deletion on 9q21 associated with multiple congenital anomalies. Am J Med Genet A 164A(1):237-242.
-
(2014)
Am J Med Genet A
, vol.164 A
, Issue.1
, pp. 237-242
-
-
Pua, H.H.1
-
21
-
-
84892513273
-
RORB gene and 9q21.13 microdeletion: Report on a patient with epilepsy and mild intellectual disability
-
Baglietto MG, et al. (2014) RORB gene and 9q21.13 microdeletion: Report on a patient with epilepsy and mild intellectual disability. Eur J Med Genet 57(1):44-46.
-
(2014)
Eur J Med Genet
, vol.57
, Issue.1
, pp. 44-46
-
-
Baglietto, M.G.1
-
22
-
-
0345343608
-
Nuclear localization of beta-catenin by interaction with transcription factor LEF-1
-
Huber O, et al. (1996) Nuclear localization of beta-catenin by interaction with transcription factor LEF-1. Mech Dev 59(1):3-10.
-
(1996)
Mech Dev
, vol.59
, Issue.1
, pp. 3-10
-
-
Huber, O.1
-
23
-
-
0034738962
-
SPAK, a STE20/SPS1-related kinase that activates the p38 pathway
-
Johnston AM, et al. (2000) SPAK, a STE20/SPS1-related kinase that activates the p38 pathway. Oncogene 19(37):4290-4297.
-
(2000)
Oncogene
, vol.19
, Issue.37
, pp. 4290-4297
-
-
Johnston, A.M.1
-
24
-
-
84904013446
-
The combination of transcriptomics and informatics identifies pathways targeted by miR-204 during neurogenesis and axon guidance
-
Conte I, et al. (2014) The combination of transcriptomics and informatics identifies pathways targeted by miR-204 during neurogenesis and axon guidance. Nucleic Acids Res 42(12):7793-7806.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.12
, pp. 7793-7806
-
-
Conte, I.1
-
25
-
-
77954650715
-
Proper differentiation of photoreceptors and amacrine cells depends on a regulatory loop between NeuroD and Six6
-
Conte I, et al. (2010) Proper differentiation of photoreceptors and amacrine cells depends on a regulatory loop between NeuroD and Six6. Development 137(14):2307-2317.
-
(2010)
Development
, vol.137
, Issue.14
, pp. 2307-2317
-
-
Conte, I.1
-
26
-
-
34548329963
-
MicroRNA (miRNA) transcriptome of mouse retina and identification of a sensory organ-specific miRNA cluster
-
Xu S, Witmer PD, Lumayag S, Kovacs B, Valle D (2007) MicroRNA (miRNA) transcriptome of mouse retina and identification of a sensory organ-specific miRNA cluster. J Biol Chem 282(34):25053-25066.
-
(2007)
J Biol Chem
, vol.282
, Issue.34
, pp. 25053-25066
-
-
Xu, S.1
Witmer, P.D.2
Lumayag, S.3
Kovacs, B.4
Valle, D.5
-
27
-
-
77952307133
-
MicroRNA-204/211 alters epithelial physiology
-
Wang FE, et al. (2010) MicroRNA-204/211 alters epithelial physiology. FASEB J 24(5):1552-1571.
-
(2010)
FASEB J
, vol.24
, Issue.5
, pp. 1552-1571
-
-
Wang, F.E.1
-
28
-
-
33748310866
-
Detection of mammalian microRNA expression by in situ hybridization with RNA oligonucleotides
-
Deo M, Yu J-Y, Chung K-H, Tippens M, Turner DL (2006) Detection of mammalian microRNA expression by in situ hybridization with RNA oligonucleotides. Dev Dyn 235(9):2538-2548.
-
(2006)
Dev Dyn
, vol.235
, Issue.9
, pp. 2538-2548
-
-
Deo, M.1
Yu, J.-Y.2
Chung, K.-H.3
Tippens, M.4
Turner, D.L.5
-
29
-
-
84867878612
-
Development of retinal pigment epithelium from human parthenogenetic embryonic stem cells and microRNA signature
-
Li W-B, et al. (2012) Development of retinal pigment epithelium from human parthenogenetic embryonic stem cells and microRNA signature. Invest Ophthalmol Vis Sci 53(9):5334-5343.
-
(2012)
Invest Ophthalmol Vis Sci
, vol.53
, Issue.9
, pp. 5334-5343
-
-
Li, W.-B.1
-
30
-
-
84862012954
-
Microphthalmia-associated transcription factor (MITF) promotes differentiation of human retinal pigment epithelium (RPE) by regulating microRNAs-204/211 expression
-
Adijanto J, et al. (2012) Microphthalmia-associated transcription factor (MITF) promotes differentiation of human retinal pigment epithelium (RPE) by regulating microRNAs-204/211 expression. J Biol Chem 287(24):20491-20503.
-
(2012)
J Biol Chem
, vol.287
, Issue.24
, pp. 20491-20503
-
-
Adijanto, J.1
-
31
-
-
84898828039
-
MiR-204/miR-211 downregulation contributes to candidemia-induced kidney injuries via derepression of Hmx1 expression
-
Li X-Y, Zhang K, Jiang Z-Y, Cai L-H (2014) MiR-204/miR-211 downregulation contributes to candidemia-induced kidney injuries via derepression of Hmx1 expression. Life Sci 102(2):139-144.
-
(2014)
Life Sci
, vol.102
, Issue.2
, pp. 139-144
-
-
Li, X.-Y.1
Zhang, K.2
Jiang, Z.-Y.3
Cai, L.-H.4
-
32
-
-
71849105587
-
Missense mutations in a retinal pigment epithelium protein, bestrophin-1, cause retinitis pigmentosa
-
Davidson AE, et al. (2009) Missense mutations in a retinal pigment epithelium protein, bestrophin-1, cause retinitis pigmentosa. Am J Hum Genet 85(5):581-592.
-
(2009)
Am J Hum Genet
, vol.85
, Issue.5
, pp. 581-592
-
-
Davidson, A.E.1
-
33
-
-
0034973574
-
Mutations in the gene encoding lecithin retinol acyltransferase are associated with early-onset severe retinal dystrophy
-
Thompson DA, et al. (2001) Mutations in the gene encoding lecithin retinol acyltransferase are associated with early-onset severe retinal dystrophy. Nat Genet 28(2):123-124.
-
(2001)
Nat Genet
, vol.28
, Issue.2
, pp. 123-124
-
-
Thompson, D.A.1
-
34
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120(1):15-20.
-
(2005)
Cell
, vol.120
, Issue.1
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
35
-
-
67349223927
-
Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss
-
Mencía A, et al. (2009) Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss. Nat Genet 41(5):609-613.
-
(2009)
Nat Genet
, vol.41
, Issue.5
, pp. 609-613
-
-
Mencía, A.1
-
36
-
-
80955145750
-
Mutation altering the miR-184 seed region causes familial keratoconus with cataract
-
Hughes AE, et al. (2011) Mutation altering the miR-184 seed region causes familial keratoconus with cataract. Am J Hum Genet 89(5):628-633.
-
(2011)
Am J Hum Genet
, vol.89
, Issue.5
, pp. 628-633
-
-
Hughes, A.E.1
-
37
-
-
84859241050
-
A single-base substitution in the seed region of miR-184 causes EDICT syndrome
-
Iliff BW, Riazuddin SA, Gottsch JD (2012) A single-base substitution in the seed region of miR-184 causes EDICT syndrome. Invest Ophthalmol Vis Sci 53(1):348-353.
-
(2012)
Invest Ophthalmol Vis Sci
, vol.53
, Issue.1
, pp. 348-353
-
-
Iliff, B.W.1
Riazuddin, S.A.2
Gottsch, J.D.3
-
38
-
-
84995280088
-
Mutational analysis of MIR184 in sporadic keratoconus and myopia
-
Lechner J, et al. (2013) Mutational analysis of MIR184 in sporadic keratoconus and myopia. Invest Ophthalmol Vis Sci 54(8):5266-5272.
-
(2013)
Invest Ophthalmol Vis Sci
, vol.54
, Issue.8
, pp. 5266-5272
-
-
Lechner, J.1
-
39
-
-
33746554263
-
Mutations in the novel mitochondrial protein REEP1 cause hereditary spastic paraplegia type 31
-
Züchner S, et al. (2006) Mutations in the novel mitochondrial protein REEP1 cause hereditary spastic paraplegia type 31. Am J Hum Genet 79(2):365-369.
-
(2006)
Am J Hum Genet
, vol.79
, Issue.2
, pp. 365-369
-
-
Züchner, S.1
-
40
-
-
77952505302
-
A mutation in the 3′-UTR of the HDAC6 gene abolishing the post-transcriptional regulation mediated by hsa-miR-433 is linked to a new form of dominant X-linked chondrodysplasia
-
Simon D, et al. (2010) A mutation in the 3′-UTR of the HDAC6 gene abolishing the post-transcriptional regulation mediated by hsa-miR-433 is linked to a new form of dominant X-linked chondrodysplasia. Hum Mol Genet 19(10):2015-2027.
-
(2010)
Hum Mol Genet
, vol.19
, Issue.10
, pp. 2015-2027
-
-
Simon, D.1
-
41
-
-
0037329247
-
Wnt2b controls retinal cell differentiation at the ciliary marginal zone
-
Kubo F, Takeichi M, Nakagawa S (2003) Wnt2b controls retinal cell differentiation at the ciliary marginal zone. Development 130(3):587-598.
-
(2003)
Development
, vol.130
, Issue.3
, pp. 587-598
-
-
Kubo, F.1
Takeichi, M.2
Nakagawa, S.3
-
42
-
-
33748808955
-
Wnt2b/beta-catenin-mediated canonical Wnt signaling determines the peripheral fates of the chick eye
-
Cho S-H, Cepko CL (2006) Wnt2b/beta-catenin-mediated canonical Wnt signaling determines the peripheral fates of the chick eye. Development 133(16):3167-3177.
-
(2006)
Development
, vol.133
, Issue.16
, pp. 3167-3177
-
-
Cho, S.-H.1
Cepko, C.L.2
-
43
-
-
84879883883
-
Foxg1 is required to limit the formation of ciliary margin tissue and Wnt/β-catenin signalling in the developing nasal retina of the mouse
-
Fotaki V, Smith R, Pratt T, Price DJ (2013) Foxg1 is required to limit the formation of ciliary margin tissue and Wnt/β-catenin signalling in the developing nasal retina of the mouse. Dev Biol 380(2):299-313.
-
(2013)
Dev Biol
, vol.380
, Issue.2
, pp. 299-313
-
-
Fotaki, V.1
Smith, R.2
Pratt, T.3
Price, D.J.4
-
44
-
-
69049085662
-
Beta-catenin controls differentiation of the retinal pigment epithelium in the mouse optic cup by regulating Mitf and Otx2 expression
-
Westenskow P, Piccolo S, Fuhrmann S (2009) Beta-catenin controls differentiation of the retinal pigment epithelium in the mouse optic cup by regulating Mitf and Otx2 expression. Development 136(15):2505-2510.
-
(2009)
Development
, vol.136
, Issue.15
, pp. 2505-2510
-
-
Westenskow, P.1
Piccolo, S.2
Fuhrmann, S.3
-
45
-
-
84873447141
-
Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration
-
Lumayag S, et al. (2013) Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration. Proc Natl Acad Sci USA 110(6):E507-E516.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.6
, pp. E507-E516
-
-
Lumayag, S.1
-
47
-
-
84908470973
-
Personalized diagnosis and management of congenital cataract by next-generation sequencing
-
Gillespie RL, et al. (2014) Personalized diagnosis and management of congenital cataract by next-generation sequencing. Ophthalmology 121(11):2124-, e1-e2.
-
(2014)
Ophthalmology
, vol.121
, Issue.11
-
-
Gillespie, R.L.1
-
48
-
-
68149165614
-
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
-
Kumar P, Henikoff S, Ng PC (2009) Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 4(7):1073-1081.
-
(2009)
Nat Protoc
, vol.4
, Issue.7
, pp. 1073-1081
-
-
Kumar, P.1
Henikoff, S.2
Ng, P.C.3
-
49
-
-
77951640946
-
A method and server for predicting damaging missense mutations
-
Adzhubei IA, et al. (2010) A method and server for predicting damaging missense mutations. Nat Methods 7(4):248-249.
-
(2010)
Nat Methods
, vol.7
, Issue.4
, pp. 248-249
-
-
Adzhubei, I.A.1
-
50
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, et al.; 1000 Genome Project Data Processing Subgroup (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics 25(16):2078-2079.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
-
51
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, et al. (2004) Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol 5(10):R80.
-
(2004)
Genome Biol
, vol.5
, Issue.10
, pp. R80
-
-
Gentleman, R.C.1
-
52
-
-
75249087100
-
edgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson MD, McCarthy DJ, Smyth GK (2010) edgeR: A Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26(1):139-140.
-
(2010)
Bioinformatics
, vol.26
, Issue.1
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
53
-
-
3042631471
-
Stages of normal development in the medaka Oryzias latipes
-
Iwamatsu T (2004) Stages of normal development in the medaka Oryzias latipes. Mech Dev 121(7-8):605-618.
-
(2004)
Mech Dev
, vol.121
, Issue.7-8
, pp. 605-618
-
-
Iwamatsu, T.1
-
54
-
-
82855167157
-
Sox2-mediated differential activation of Six3.2 contributes to forebrain patterning
-
Beccari L, Conte I, Cisneros E, Bovolenta P (2012) Sox2-mediated differential activation of Six3.2 contributes to forebrain patterning. Development 139(1):151-164.
-
(2012)
Development
, vol.139
, Issue.1
, pp. 151-164
-
-
Beccari, L.1
Conte, I.2
Cisneros, E.3
Bovolenta, P.4
-
55
-
-
1542722947
-
An inexpensive device for non-invasive electroretinography in small aquatic vertebrates
-
Makhankov YV, Rinner O, Neuhauss SCF (2004) An inexpensive device for non-invasive electroretinography in small aquatic vertebrates. J Neurosci Methods 135(1-2):205-210.
-
(2004)
J Neurosci Methods
, vol.135
, Issue.1-2
, pp. 205-210
-
-
Makhankov, Y.V.1
Rinner, O.2
Neuhauss, S.C.F.3
|