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Volumn 1094, Issue , 2014, Pages 259-267

Hydroxymethylated DNA immunoprecipitation (hmeDIP)

Author keywords

5 Hydroxymethylcytosine; Antibody; DNA; Hydroxymethylation; Immunoprecipitation; Methylation; Sonication

Indexed keywords

5 HYDROXYMETHYLCYTOSINE; GENOMIC DNA;

EID: 84934437854     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-706-8_20     Document Type: Article
Times cited : (31)

References (18)
  • 1
    • 66149123748 scopus 로고    scopus 로고
    • The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
    • Kriaucionis S, Heintz N (2009) The nuclear DNA base 5- hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 324:929-930
    • (2009) Science , vol.324 , pp. 929-930
    • Kriaucionis, S.1    Heintz, N.2
  • 2
    • 66149146320 scopus 로고    scopus 로고
    • Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
    • Tahiliani M, Koh KP, Shen Y et al (2009) Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324:930-935
    • (2009) Science , vol.324 , pp. 930-935
    • Tahiliani, M.1    Koh, K.P.2    Shen, Y.3
  • 3
    • 78650826181 scopus 로고    scopus 로고
    • Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates
    • Globisch D, Munzel M, Muller M et al (2010) Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates. PLoS One 5:e15367
    • (2010) PLoS One , vol.5
    • Globisch, D.1    Munzel, M.2    Muller, M.3
  • 4
    • 79960249232 scopus 로고    scopus 로고
    • Genomic mapping of 5-hydroxymethylcytosine in the human brain
    • Jin SG, Wu X, Li AX et al (2011) Genomic mapping of 5- hydroxymethylcytosine in the human brain. Nucleic Acids Res 39: 5015-5024
    • (2011) Nucleic Acids Res , vol.39 , pp. 5015-5024
    • Jin, S.G.1    Wu, X.2    Li, A.X.3
  • 5
    • 84857891830 scopus 로고    scopus 로고
    • Tissue type is a major modifi er of the 5-hydroxymethylcytosine content of human genes
    • Nestor CE, Ottaviano R, Reddington J et al (2012) Tissue type is a major modifi er of the 5-hydroxymethylcytosine content of human genes. Genome Res 22:467-477
    • (2012) Genome Res , vol.22 , pp. 467-477
    • Nestor, C.E.1    Ottaviano, R.2    Reddington, J.3
  • 6
    • 78049401678 scopus 로고    scopus 로고
    • Sensitive enzymatic quantifi cation of 5-hydroxymethylcytosine in genomic DNA
    • Szwagierczak A, Bultmann S, Schmidt CS et al (2010) Sensitive enzymatic quantifi cation of 5-hydroxymethylcytosine in genomic DNA. Nucleic Acids Res 38:e181
    • (2010) Nucleic Acids Res , vol.38
    • Szwagierczak, A.1    Bultmann, S.2    Schmidt, C.S.3
  • 7
    • 77956189495 scopus 로고    scopus 로고
    • Role of Tet proteins in 5mC to 5hmC conversion. ES-cell self-renewal and inner cell mass specifi cation
    • Ito S, D'Alessio AC, Taranova OV et al (2010) Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specifi cation. Nature 466:1129-1133
    • (2010) Nature , vol.466 , pp. 1129-1133
    • Ito, S.1    D'Alessio, A.C.2    Taranova, O.V.3
  • 8
    • 79551587102 scopus 로고    scopus 로고
    • Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specifi cation in mouse embryonic stem cells
    • Koh KP, Yabuuchi A, Rao S et al (2011) Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specifi cation in mouse embryonic stem cells. Cell Stem Cell 8:200-213
    • (2011) Cell Stem Cell , vol.8 , pp. 200-213
    • Koh, K.P.1    Yabuuchi, A.2    Rao, S.3
  • 9
    • 77749277177 scopus 로고    scopus 로고
    • The behaviour of 5-hydroxymethylcytosine in bisulfi te sequencing
    • Huang Y, Pastor WA, Shen Y et al (2010) The behaviour of 5-hydroxymethylcytosine in bisulfi te sequencing. PLoS One 5:e8888
    • (2010) PLoS One , vol.5
    • Huang, Y.1    Pastor, W.A.2    Shen, Y.3
  • 10
    • 77954362183 scopus 로고    scopus 로고
    • Examination of the specificity of DNA methylation profi ling techniques towards 5-methylcytosine and 5-hydroxymethyl cytosine
    • Jin SG, Kadam S, Pfeifer GP (2010) Examination of the specificity of DNA methylation profi ling techniques towards 5-methylcytosine and 5-hydroxymethyl cytosine. Nucleic Acids Res 38:e125
    • (2010) Nucleic Acids Res , vol.38
    • Jin, S.G.1    Kadam, S.2    Pfeifer, G.P.3
  • 11
    • 77954061853 scopus 로고    scopus 로고
    • Enzymatic approaches and bisulfi te sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA
    • Nestor C, Ruzov A, Meehan R et al (2010) Enzymatic approaches and bisulfi te sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA. Biotechniques 48:317-319
    • (2010) Biotechniques , vol.48 , pp. 317-319
    • Nestor, C.1    Ruzov, A.2    Meehan, R.3
  • 12
    • 79956323623 scopus 로고    scopus 로고
    • Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
    • Ficz G, Branco MR, Seisenberger S et al (2011) Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation. Nature 473:398-402
    • (2011) Nature , vol.473 , pp. 398-402
    • Ficz, G.1    Branco, M.R.2    Seisenberger, S.3
  • 13
    • 79954457998 scopus 로고    scopus 로고
    • Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells
    • Wu H, D'Alessio AC, Ito S et al (2011) Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells. Genes Dev 25:679-684
    • (2011) Genes Dev , vol.25 , pp. 679-684
    • Wu, H.1    D'Alessio, A.C.2    Ito, S.3
  • 14
    • 79959209733 scopus 로고    scopus 로고
    • 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells
    • Stroud H, Feng S, Morey Kinney S et al (2011) 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells. Genome Biol 12:R54
    • (2011) Genome Biol , vol.12
    • Stroud, H.1    Feng, S.2    Morey Kinney, S.3
  • 16
    • 61449426211 scopus 로고    scopus 로고
    • Methylated DNA immunoprecipitation (MeDIP)
    • Mohn F, Weber M, Schubeler D et al (2009) Methylated DNA immunoprecipitation (MeDIP). Method Mol Biol 507:55-64
    • (2009) Method Mol Biol , vol.507 , pp. 55-64
    • Mohn, F.1    Weber, M.2    Schubeler, D.3
  • 17
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • DOI 10.1038/ng1598
    • Weber M, Davies JJ, Wittig D et al (2005) Chromosome-wide and promoter-specifi c analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat Genet 37:853-862 (Pubitemid 41077111)
    • (2005) Nature Genetics , vol.37 , Issue.8 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5    Lam, W.L.6    Schubeler, D.7
  • 18
    • 79960127277 scopus 로고    scopus 로고
    • Tissue-specifi c distribution and dynamic changes of 5- hydroxymethylcytosine in mammalian genomes
    • Kinney SM, Chin HG, Vaisvila R et al (2011) Tissue-specifi c distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes. J Biol Chem 286:24685-24693
    • (2011) J Biol Chem , vol.286 , pp. 24685-24693
    • Kinney, S.M.1    Chin, H.G.2    Vaisvila, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.