Phosphoproteomic analysis of lymphocyte signaling

Advances in Experimental Medicine and Biology

Volumn 584, Issue , 2006, Pages 277-288

  Cao, Lulu ^a   Yu, Kebing ^a   Salomon, Arthur R ^a  

^a BROWN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84934435757     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/0-387-34132-3_19     Document Type: Conference Paper

References (27)

1. S. P. Gygi, Y. Rochon, B. R. Franza, and R. Aebersold, Correlation between protein and mRNA abundance in yeast, Mol Cell Biol 19(3), 1720-1730 (1999).
2. M. P. Washburn, D. Wolters, and J. R. Yates, 3rd, Large-scale analysis of the yeast proteome by multidimensional protein identification technology, Nat Biotechnol 19(3), 242-247 (2001).
3. S. A. Beausoleil, M. Jedrychowski, D. Schwartz, J. E. Elias, J. Villen, J. Li, M. A. Cohn, L. C. Cantley, and S. P. Gygi, Large-scale characterization of HeLa cell nuclear phosphoproteins, Proc Natl Acad Sci USA 101(33), 12130-12135 (2004).
4. M. Mann, and O. N. Jensen, Proteomic analysis of post-translational modifications, Nat Biotechnol 21(3), 255-261 (2003).
5. J. E. Syka, J. J. Coon, M. J. Schroeder, J. Shabanowitz, and D. F. Hunt, Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry, Proc Natl Acad Sci U S A 101(26), 9528-9533 (2004).
6. L. M. Brill, A. R. Salomon, S. B. Ficarro, M. Mukherji, M. Stettler-Gill, and E. C. Peters, Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry, Anal Chem 76(10), 2763-2772 (2004).
7. S. B. Ficarro, A. R. Salomon, L. M. Brill, D. E. Mason, M. Stettler-Gill, A. Brock, and E. C. Peters, Automated immobilized metal affinity chromatography/nanoliquid chromatography/electrospray ionization mass spectrometry platform for profiling protein phosphorylation sites, Rapid Commun Mass Spectrom 19(1), 57-71 (2005).
8. M. J. MacCoss, C. C. Wu, and J. R. Yates, 3rd, Probability-based validation of protein identifications using a modified SEQUEST algorithm, Anal Chem 74(21), 5593-5599 (2002).
9. Y. Oda, T. Nagasu, and B. Chait, Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome, Nature Biotechnology 19, 379-382 (2001).
10. M. C. Posewitz, and P. Tempst, Immobilized gallium(III) affinity chromatography of phosphopeptides, Anal Chem 71(14), 2883-2892 (1999).
11. S. B. Ficarro, M. L. McCleland, P. T. Stukenberg, D. J. Burke, M. M. Ross, J. Shabanowitz, D. F. Hunt, and F. M. White, Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae, Nat Biotechnol 20(3), 301-305 (2002).
12. D. C. Neville, C. R. Rozanas, E. M. Price, D. B. Gruis, A. S. Verkman, and R. R. Townsend, Evidence for phosphorylation of serine 753 in CFTR using a novel metal-ion affinity resin and matrix-assisted laser desorption mass spectrometry, Protein Sci 6(11), 2436-2445 (1997).
13. A. Stensballe, S. Andersen, and O. N. Jensen, Characterization of phosphoproteins from electrophoretic gels by nanoscale Fe(III) affinity chromatography with off-line mass spectrometry analysis, Proteomics 1(2), 207-222 (2001).
14. A. R. Salomon, S. B. Ficarro, L. M. Brill, A. Brinker, Q. T. Phung, C. Ericson, K. Sauer, A. Brock, D. M. Horn, P. G. Schultz, and E. C. Peters, Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry, Proc Natl Acad Sci U S A 100(2), 443-448 (2003).
15. Y. Zhang, A. Wolf-Yadlin, P. L. Ross, D. J. Pappin, J. Rush, D. A. Lauffenburger, and F. M. White, Time-resolved Mass Spectrometry of Tyrosine Phosphorylation Sites in the Epidermal Growth Factor Receptor Signaling Network Reveals Dynamic Modules, Mol Cell Proteomics 4(9), 1240-1250 (2005).
16. S. Peri, J. D. Navarro, R. Amanchy, T. Z. Kristiansen, C. K. Jonnalagadda, V. Surendranath, V. Niranjan, B. Muthusamy, T. K. Gandhi, M. Gronborg, N. Ibarrola, N. Deshpande, K. Shanker, H. N. Shivashankar, B. P. Rashmi, M. A. Ramya, Z. Zhao, K. N. Chandrika, N. Padma, H. C. Harsha, A. J. Yatish, M. P. Kavitha, M. Menezes, D. R. Choudhury, S. Suresh, N. Ghosh, R. Saravana, S. Chandran, S. Krishna, M. Joy, S. K. Anand, V. Madavan, A. Joseph, G. W. Wong, W. P. Schiemann, S. N. Constantinescu, L. Huang, R. Khosravi-Far, H. Steen, M. Tewari, S. Ghaffari, G. C. Blobe, C. V. Dang, J. G. Garcia, J. Pevsner, O. N. Jensen, P. Roepstorff, K. S. Deshpande, A. M. Chinnaiyan, A. Hamosh, A. Chakravarti, and A. Pandey, Development of human protein reference database as an initial platform for approaching systems biology in humans, Genome Res 13(10), 2363-2371 (2003).
17. H. Steen, B. Kuster, M. Fernandez, A. Pandey, and M. Mann, Tyrosine phosphorylation mapping of the epidermal growth factor receptor signaling pathway, J Biol Chem 277(2), 1031-1039 (2002).
18. I. de Aos, M. H. Metzger, M. Exley, C. E. Dahl, S. Misra, D. Zheng, L. Varticovski, C. Terhorst, and J. Sancho, Tyrosine phosphorylation of the CD3-epsilon subunit of the T cell antigen receptor mediates enhanced association with phosphatidylinositol 3-kinase in Jurkat T cells, J Biol Chem 272(40), 25310-25318 (1997).
19. E. N. Kersh, A. S. Shaw, and P. M. Allen, Fidelity of T cell activation through multistep T cell receptor zeta phosphorylation, Science 281(5376), 572-575 (1998).
20. J. M. Vila, I. Gimferrer, O. Padilla, M. Arman, L. Places, M. Simarro, J. Vives, and F. Lozano, Residues Y429 and Y463 of the human CD5 are targeted by protein tyrosine kinases, Eur J Immunol 31(4), 1191-1198 (2001).
21. D. D. Schlaepfer, C. R. Hauck, and D. J. Sieg, Signaling through focal adhesion kinase, Prog Biophys Mol Biol 71(3-4), 435-478 (1999).
22. J. D. Watts, M. Affolter, D. L. Krebs, R. L. Wange, L. E. Samelson, and R. Aebersold, Identification by electrospray ionization mass spectrometry of the sites of tyrosine phosphorylation induced in activated Jurkat T cells on the protein tyrosine kinase ZAP-70, J Biol Chem 269(47), 29520-29529 (1994).
23. V. Di Bartolo, D. Mege, V. Germain, M. Pelosi, E. Dufour, F. Michel, G. Magistrelli, A. Isacchi, and O. Acuto, Tyrosine 319, a newly identified phosphorylation site of ZAP-70, plays a critical role in T cell antigen receptor signaling, J Biol Chem 274(10), 6285-6294 (1999).
24. A. C. Chan, M. Dalton, R. Johnson, G. H. Kong, T. Wang, R. Thoma, and T. Kurosaki, Activation of ZAP-70 kinase activity by phosphorylation of tyrosine 493 is required for lymphocyte antigen receptor function, Embo J 14(11), 2499-2508 (1995).
25. H. Kanda, T. Mimura, K. Hamasaki, K. Yamamoto, Y. Yazaki, H. Hirai, and Y. Nojima, Fyn and Lck tyrosine kinases regulate tyrosine phosphorylation of p105CasL, a member of the p130Cas docking protein family, in T-cell receptor-mediated signalling, Immunology 97(1), 56-61 (1999).
26. J. E. Hutchcroft, J. M. Slavik, H. Lin, T. Watanabe, and B. E. Bierer, Uncoupling activation-dependent HS1 phosphorylation from nuclear factor of activated T cells transcriptional activation in Jurkat T cells: differential signaling through CD3 and the costimulatory receptors CD2 and CD28, J Immunol 161(9), 4506-4512 (1998).
27. M. Ruzzene, A. M. Brunati, O. Marin, A. Donella-Deana, and L. A. Pinna, SH2 domains mediate the sequential phosphorylation of HS1 protein by p72syk and Srcrelated protein tyrosine kinases, Biochemistry 35(16), 5327-5332 (1996).