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Volumn 192, Issue , 2015, Pages 293-301

Generation of silver stained TE-AFLP markers in tea (Camellia sinensis) and their assessment in filling gaps with construction of a genetic linkage map

Author keywords

Linkage groups; Marker assisted selection; Pseudo testcross; Tea

Indexed keywords

CLONE; GENETIC MARKER; GENOME; IDENTIFICATION KEY; NUCLEIC ACID; PLANT BREEDING; POLYMORPHISM; SHRUB; SILVER; TEA;

EID: 84933566563     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2015.06.033     Document Type: Article
Times cited : (3)

References (60)
  • 1
    • 0031597552 scopus 로고    scopus 로고
    • Molecular genetic analysis of black poplar (Populus nigra L.) along Dutch rivers
    • Arens P., Coops H., Jansen J., Vosman B. Molecular genetic analysis of black poplar (Populus nigra L.) along Dutch rivers. Mol. Eco. 1998, 7:11-18.
    • (1998) Mol. Eco. , vol.7 , pp. 11-18
    • Arens, P.1    Coops, H.2    Jansen, J.3    Vosman, B.4
  • 4
    • 0032443694 scopus 로고    scopus 로고
    • Amplified fragment length polymorphism (AFLP): a review of the procedure and its applications
    • Blears M.J., de Grandis S.A., Lee H., Trevors J.T. Amplified fragment length polymorphism (AFLP): a review of the procedure and its applications. J. Ind. Microbiol. Biotechnol. 1998, 21:99-114.
    • (1998) J. Ind. Microbiol. Biotechnol. , vol.21 , pp. 99-114
    • Blears, M.J.1    de Grandis, S.A.2    Lee, H.3    Trevors, J.T.4
  • 5
    • 0346140714 scopus 로고
    • Molecular genetics of growth and development in Populus. II. Segregation distortion due to genetic load
    • Bradshaw H.D., Stettler R.F. Molecular genetics of growth and development in Populus. II. Segregation distortion due to genetic load. Theor. Appl. Genet. 1994, 139:963-973.
    • (1994) Theor. Appl. Genet. , vol.139 , pp. 963-973
    • Bradshaw, H.D.1    Stettler, R.F.2
  • 6
    • 0032883574 scopus 로고    scopus 로고
    • AFLP markers in a molecular linkage map of maize: codominant scoring and linkage group distribution
    • Castiglioni P., Ajmone-Marsan P., van Wijk R., Motto M. AFLP markers in a molecular linkage map of maize: codominant scoring and linkage group distribution. Theor. Appl. Genet. 1999, 99:425-431.
    • (1999) Theor. Appl. Genet. , vol.99 , pp. 425-431
    • Castiglioni, P.1    Ajmone-Marsan, P.2    van Wijk, R.3    Motto, M.4
  • 7
    • 0031928373 scopus 로고    scopus 로고
    • An AFLP-based procedure for the efficient mapping of mutations and DNA probes in barley
    • Castiglioni P., Pozzi C., Heun M., Terzi V., Muller K.J., Rohde W., Salamini F. An AFLP-based procedure for the efficient mapping of mutations and DNA probes in barley. Genetics 1998, 149:2039-2056.
    • (1998) Genetics , vol.149 , pp. 2039-2056
    • Castiglioni, P.1    Pozzi, C.2    Heun, M.3    Terzi, V.4    Muller, K.J.5    Rohde, W.6    Salamini, F.7
  • 8
    • 0025872337 scopus 로고
    • A maximum likelihood method for estimating genome length using genetic linkage data
    • Chakravarti A., Lasher L.K., Reefer J.E. A maximum likelihood method for estimating genome length using genetic linkage data. Genetics 1991, 128:175-182.
    • (1991) Genetics , vol.128 , pp. 175-182
    • Chakravarti, A.1    Lasher, L.K.2    Reefer, J.E.3
  • 9
    • 0031045410 scopus 로고    scopus 로고
    • Silver staining and recovery of AFLP amplification products on large denaturing polyacrylamide gels
    • Chalhoub B.A., Thibault S., Laucou V., Rameau C., Hofte H., Cousin R. Silver staining and recovery of AFLP amplification products on large denaturing polyacrylamide gels. Biotechniques 1997, 22:216-220.
    • (1997) Biotechniques , vol.22 , pp. 216-220
    • Chalhoub, B.A.1    Thibault, S.2    Laucou, V.3    Rameau, C.4    Hofte, H.5    Cousin, R.6
  • 10
    • 10344221610 scopus 로고    scopus 로고
    • Generation and analysis of expressed sequence tags from the tender shoots cDNA library of tea plant (Camellia sinensis)
    • Chen L., Zhao L.P., Gao Q.K. Generation and analysis of expressed sequence tags from the tender shoots cDNA library of tea plant (Camellia sinensis). Plant Sci. 2005, 168:359-363.
    • (2005) Plant Sci. , vol.168 , pp. 359-363
    • Chen, L.1    Zhao, L.P.2    Gao, Q.K.3
  • 11
    • 0029849369 scopus 로고    scopus 로고
    • Modified crush-and-soak method for recovering oligodeoxynucleotides from polyacrylamide gel
    • Chen Z., Ruffner D.E. Modified crush-and-soak method for recovering oligodeoxynucleotides from polyacrylamide gel. Biotechniques 1996, 21:820-822.
    • (1996) Biotechniques , vol.21 , pp. 820-822
    • Chen, Z.1    Ruffner, D.E.2
  • 12
    • 0035694732 scopus 로고    scopus 로고
    • A genetic map on the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions
    • Fishman L., Kelly A.J., Morgan E., Willis J.H. A genetic map on the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions. Genetics 2001, 159:1701-1716.
    • (2001) Genetics , vol.159 , pp. 1701-1716
    • Fishman, L.1    Kelly, A.J.2    Morgan, E.3    Willis, J.H.4
  • 13
    • 0034523317 scopus 로고    scopus 로고
    • Mapping candidate genes in Eucalyptus with emphasis on lignification genes
    • Gion J.M., Rech P., Grima Pettenati J., Verhaegen D., Plomion C. Mapping candidate genes in Eucalyptus with emphasis on lignification genes. Mol. Breed. 2000, 6:441-449.
    • (2000) Mol. Breed. , vol.6 , pp. 441-449
    • Gion, J.M.1    Rech, P.2    Grima Pettenati, J.3    Verhaegen, D.4    Plomion, C.5
  • 14
    • 0028136089 scopus 로고
    • Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-test cross: mapping strategy and RAPD markers
    • Grattapaglia D., Sederoff R. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-test cross: mapping strategy and RAPD markers. Genetics 1994, 137:1121-1137.
    • (1994) Genetics , vol.137 , pp. 1121-1137
    • Grattapaglia, D.1    Sederoff, R.2
  • 15
    • 0034496173 scopus 로고    scopus 로고
    • Construction of a genetic linkage map for Camellia sinensis (tea)
    • Hackett C.A., Wachira F.N., Paul S., Powell W., Waugh R. Construction of a genetic linkage map for Camellia sinensis (tea). Heredity 2000, 85:346-355.
    • (2000) Heredity , vol.85 , pp. 346-355
    • Hackett, C.A.1    Wachira, F.N.2    Paul, S.3    Powell, W.4    Waugh, R.5
  • 17
    • 38149144422 scopus 로고
    • A genetic linkage map for maize based on RFLPs
    • Helentjaris T. A genetic linkage map for maize based on RFLPs. Trends Genet. 1987, 3:217-221.
    • (1987) Trends Genet. , vol.3 , pp. 217-221
    • Helentjaris, T.1
  • 18
    • 84876720256 scopus 로고    scopus 로고
    • Construction of an integrated genetic map based on maternal and paternal lineages of tea (Camellia sinensis)
    • Hu C.Y., Lee T.C., Tsai H.T., Tsai Y.Z., Lin S.F. Construction of an integrated genetic map based on maternal and paternal lineages of tea (Camellia sinensis). Euphytica 2013, 191:141-152.
    • (2013) Euphytica , vol.191 , pp. 141-152
    • Hu, C.Y.1    Lee, T.C.2    Tsai, H.T.3    Tsai, Y.Z.4    Lin, S.F.5
  • 19
    • 34250175858 scopus 로고    scopus 로고
    • Hemi-nested touchdown PCR combined with primer-template mismatch PCR for rapid isolation and sequencing of low molecular weight glutenin subunit gene family from a hexaploid wheat BAC library
    • Huang X.Q., Cloutier S. Hemi-nested touchdown PCR combined with primer-template mismatch PCR for rapid isolation and sequencing of low molecular weight glutenin subunit gene family from a hexaploid wheat BAC library. BMC Genet. 2007, 8:18. 10.1186/1471-2156-8-18.
    • (2007) BMC Genet. , vol.8 , pp. 18
    • Huang, X.Q.1    Cloutier, S.2
  • 20
    • 44449146530 scopus 로고    scopus 로고
    • Genetic mapping of first generation of backcross in tea by RAPD and ISSR markers
    • Huang F.P., Liang Y.R., Lu J.L., Chen R.B. Genetic mapping of first generation of backcross in tea by RAPD and ISSR markers. J. Tea Sc. 2006, 26:171-176.
    • (2006) J. Tea Sc. , vol.26 , pp. 171-176
    • Huang, F.P.1    Liang, Y.R.2    Lu, J.L.3    Chen, R.B.4
  • 24
    • 36949045853 scopus 로고
    • High frequency haploid production in barley (Hordeum vulgare L.)
    • Kasha K.J., Kao K.N. High frequency haploid production in barley (Hordeum vulgare L.). Nature 1970, 225:874-876.
    • (1970) Nature , vol.225 , pp. 874-876
    • Kasha, K.J.1    Kao, K.N.2
  • 25
    • 80052392078 scopus 로고    scopus 로고
    • 2010. Molecular marker-based characterization in candidate plus trees of Pongamia pinnata, a potential biodiesel legume
    • Kesari V., Sathyanarayana V.M., Parida A., Rangan L. 2010. Molecular marker-based characterization in candidate plus trees of Pongamia pinnata, a potential biodiesel legume. AoB Plants. 2010, 10.1093/aobpla/plq017.
    • (2010) AoB Plants.
    • Kesari, V.1    Sathyanarayana, V.M.2    Parida, A.3    Rangan, L.4
  • 26
    • 0000732266 scopus 로고
    • The estimation of map distances from recombination values
    • Kosambi D.D. The estimation of map distances from recombination values. Ann. Eugen. 1944, 12:172-175.
    • (1944) Ann. Eugen. , vol.12 , pp. 172-175
    • Kosambi, D.D.1
  • 27
  • 29
    • 33746740468 scopus 로고    scopus 로고
    • A first linkage map of globe artichoke (Cynara cardunculus var. scolymus L.) based on AFLP S-SAP, M-AFLP and microsatellite markers
    • Lanteri S., Acquadro A., Comino C., Mauro R., Mauromicale G., Portis E. A first linkage map of globe artichoke (Cynara cardunculus var. scolymus L.) based on AFLP S-SAP, M-AFLP and microsatellite markers. Theor. Appl. Genet. 2006, 112:1532-1542.
    • (2006) Theor. Appl. Genet. , vol.112 , pp. 1532-1542
    • Lanteri, S.1    Acquadro, A.2    Comino, C.3    Mauro, R.4    Mauromicale, G.5    Portis, E.6
  • 30
    • 35148851972 scopus 로고    scopus 로고
    • AFLP fingerprinting of sesame (Sesamum indicum L.) cultivars: identification, genetic relationship and comparison of AFLP informativeness parameters
    • Laurentin H., Karlovsky P. AFLP fingerprinting of sesame (Sesamum indicum L.) cultivars: identification, genetic relationship and comparison of AFLP informativeness parameters. Genet. Resour. Crop Evol. 2007, 54:1437-1446.
    • (2007) Genet. Resour. Crop Evol. , vol.54 , pp. 1437-1446
    • Laurentin, H.1    Karlovsky, P.2
  • 31
    • 0031854235 scopus 로고    scopus 로고
    • Construction of a genetic linkage map and identification of AFLP markers linked to root-knot nematodes in peach rootstocks
    • Lu Z.X., Sisinski B., Reighard G.L., Baird W.V., Abbott A.G. Construction of a genetic linkage map and identification of AFLP markers linked to root-knot nematodes in peach rootstocks. Genome 1998, 41:199-207.
    • (1998) Genome , vol.41 , pp. 199-207
    • Lu, Z.X.1    Sisinski, B.2    Reighard, G.L.3    Baird, W.V.4    Abbott, A.G.5
  • 32
    • 84899882430 scopus 로고    scopus 로고
    • Construction of a SSR-based genetic map and identification of QTLs for catechins content in tea plant (Camellia sinensis).
    • Ma J.Q., Yao M.Z., Ma C.L., Wang X.C. Jin J.Q. Wang X.M. Chen L., 2014. Construction of a SSR-based genetic map and identification of QTLs for catechins content in tea plant (Camellia sinensis). PLoS ONE. 9, e93131., doi: 10.1371/journal.pone.0093131.
    • (2014) PLoS ONE. , vol.9 , pp. e93131
    • Ma, J.Q.1    Yao, M.Z.2    Ma, C.L.3    Wang, X.C.4    Jin, J.Q.5    Wang, X.M.6    Chen, L.7
  • 36
    • 12744261397 scopus 로고    scopus 로고
    • Genetic structure and diversity among radish varieties as inferred from AFLP and ISSR analyses
    • Muminovic J., Merz A., Melchinger A.E. Genetic structure and diversity among radish varieties as inferred from AFLP and ISSR analyses. J. Amer. Soc. Hort. Sci. 2005, 130:79-87.
    • (2005) J. Amer. Soc. Hort. Sci. , vol.130 , pp. 79-87
    • Muminovic, J.1    Merz, A.2    Melchinger, A.E.3
  • 38
    • 1542351290 scopus 로고    scopus 로고
    • EST analysis of genes involved in secondary metabolism in Camellia sinensis (tea), using suppression subtractive hybridization
    • Park J.S., Kim J.B., Hahn B.S., Kim K.H., Ha S.H., Kim Y.H. EST analysis of genes involved in secondary metabolism in Camellia sinensis (tea), using suppression subtractive hybridization. Plant Sci. 2004, 166:953-961.
    • (2004) Plant Sci. , vol.166 , pp. 953-961
    • Park, J.S.1    Kim, J.B.2    Hahn, B.S.3    Kim, K.H.4    Ha, S.H.5    Kim, Y.H.6
  • 39
    • 0031526548 scopus 로고    scopus 로고
    • Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components
    • Porebski S., Bailey L.G., Baum B.R. Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol. Bio. Rep. 1997, 15:8-15.
    • (1997) Plant Mol. Bio. Rep. , vol.15 , pp. 8-15
    • Porebski, S.1    Bailey, L.G.2    Baum, B.R.3
  • 40
    • 7844227430 scopus 로고    scopus 로고
    • The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis
    • Powell W., Margenta M., Andre C., Hanfrey M., Vogel J., Tingey S., Rafalsky A. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 1996, 2:225-238.
    • (1996) Mol. Breed. , vol.2 , pp. 225-238
    • Powell, W.1    Margenta, M.2    Andre, C.3    Hanfrey, M.4    Vogel, J.5    Tingey, S.6    Rafalsky, A.7
  • 41
    • 0032944972 scopus 로고    scopus 로고
    • A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars
    • Prevost A., Wilkinson M. A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor. Appl. Genet. 1999, 98:107-112.
    • (1999) Theor. Appl. Genet. , vol.98 , pp. 107-112
    • Prevost, A.1    Wilkinson, M.2
  • 43
    • 25444491776 scopus 로고    scopus 로고
    • Genetic relationships and diversity revealed by AFLP markers in Mexican common bean bred cultivars
    • Rosales S.R., Hernandez D.S., González P.M., Acosta G.J.A., Mayek P.N. Genetic relationships and diversity revealed by AFLP markers in Mexican common bean bred cultivars. Crop Sci. 2005, 45:1951-1957.
    • (2005) Crop Sci. , vol.45 , pp. 1951-1957
    • Rosales, S.R.1    Hernandez, D.S.2    González, P.M.3    Acosta, G.J.A.4    Mayek, P.N.5
  • 44
    • 79952629643 scopus 로고    scopus 로고
    • Construction of cDNA library for young roots of tea plant (Camellia sinensis (L.) O. Kuntze) and analysis of its expressed sequence tags
    • Shi C.Y., Wan X.C. Construction of cDNA library for young roots of tea plant (Camellia sinensis (L.) O. Kuntze) and analysis of its expressed sequence tags. J. Nanjing Agricul. Univ. 2009, 32:126-130.
    • (2009) J. Nanjing Agricul. Univ. , vol.32 , pp. 126-130
    • Shi, C.Y.1    Wan, X.C.2
  • 45
    • 79952045110 scopus 로고    scopus 로고
    • Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds
    • Shi C.Y., Yang H., Wei C.L., Yu O., Zhang Z.Z., Jiang C.J., Sun J., Li Y.Y., Chen Q., Xia T., Wan X.C. Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. BMC Genomics 2011, 12:131. 10.1186/1471-2164-12-131.
    • (2011) BMC Genomics , vol.12 , pp. 131
    • Shi, C.Y.1    Yang, H.2    Wei, C.L.3    Yu, O.4    Zhang, Z.Z.5    Jiang, C.J.6    Sun, J.7    Li, Y.Y.8    Chen, Q.9    Xia, T.10    Wan, X.C.11
  • 46
    • 33847291371 scopus 로고    scopus 로고
    • RAPD linkage map of tea plant and the possibility of application in tea genetics and breeding
    • Tanaka J. RAPD linkage map of tea plant and the possibility of application in tea genetics and breeding. Tea Res. J. 1996, 84:44-45.
    • (1996) Tea Res. J. , vol.84 , pp. 44-45
    • Tanaka, J.1
  • 47
    • 44449154843 scopus 로고    scopus 로고
    • Estimation of the genome size of tea (Camellia sinensis) Camellia (C. japonica), and their interspecific hybrids by flow cytometry
    • Tanaka J., Taniguchi F., Hirai N., Yamaguchi S. Estimation of the genome size of tea (Camellia sinensis) Camellia (C. japonica), and their interspecific hybrids by flow cytometry. Tea Res. J. 2006, 101:1-7.
    • (2006) Tea Res. J. , vol.101 , pp. 1-7
    • Tanaka, J.1    Taniguchi, F.2    Hirai, N.3    Yamaguchi, S.4
  • 49
    • 84896721385 scopus 로고    scopus 로고
    • Floral Transcriptome Sequencing for SSR Marker Development and Linkage Map Construction in the Tea Plant Camellia sinensis).
    • e81611
    • Tan L.Q., Wang L.Y., Wei K., Zhang C.C., Wu L.Y., Qi G.N., Cheng H., Zhang Q., Cui Q.M., Liang J.B., 2013. Floral Transcriptome Sequencing for SSR Marker Development and Linkage Map Construction in the Tea Plant Camellia sinensis). PLoS One., 8, e81611., doi: 10.1371/journal.pone.0081611.
    • (2013) PLoS One. , vol.8
    • Tan, L.Q.1    Wang, L.Y.2    Wei, K.3    Zhang, C.C.4    Wu, L.Y.5    Qi, G.N.6    Cheng, H.7    Zhang, Q.8    Cui, Q.M.9    Liang, J.B.10
  • 53
    • 0000580759 scopus 로고    scopus 로고
    • Optimization of silver-staining AFLP technique for soybean
    • Vantoai T.T., Peng J.Q., Martin S. Optimization of silver-staining AFLP technique for soybean. Soybean Genet. Newslett. 1996, 23:206-209.
    • (1996) Soybean Genet. Newslett. , vol.23 , pp. 206-209
    • Vantoai, T.T.1    Peng, J.Q.2    Martin, S.3
  • 54
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: software for the graphical presentation of linkage maps and QTLs
    • Voorrips R.E. MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 2002, 93:77-78.
    • (2002) J. Hered. , vol.93 , pp. 77-78
    • Voorrips, R.E.1
  • 58
    • 20444376553 scopus 로고    scopus 로고
    • An integrated genetic linkage map of peach by SSR, STS, AFLP and RAPD
    • Yamamoto T., Yamaguchi M., Hayashi T. An integrated genetic linkage map of peach by SSR, STS, AFLP and RAPD. J. Jpn. Soc. Hort. Sci. 2005, 74:204-213.
    • (2005) J. Jpn. Soc. Hort. Sci. , vol.74 , pp. 204-213
    • Yamamoto, T.1    Yamaguchi, M.2    Hayashi, T.3
  • 59
    • 33645563401 scopus 로고    scopus 로고
    • Establishment of AFLP technique and assessment of primer combinations for mei flower
    • Yang C., Zhang J., Xu Q., Xiong C., Bao M. Establishment of AFLP technique and assessment of primer combinations for mei flower. Plant Mol. Bio. Rep. 2005, 23:79-80.
    • (2005) Plant Mol. Bio. Rep. , vol.23 , pp. 79-80
    • Yang, C.1    Zhang, J.2    Xu, Q.3    Xiong, C.4    Bao, M.5
  • 60
    • 0038718474 scopus 로고    scopus 로고
    • Genetic linkage map of the Eastern oyster Crassostrea virginica Gmelin
    • Yu Z., Guo X. Genetic linkage map of the Eastern oyster Crassostrea virginica Gmelin. Biol. Bull. 2003, 204:327-338.
    • (2003) Biol. Bull. , vol.204 , pp. 327-338
    • Yu, Z.1    Guo, X.2


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