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Volumn 8, Issue , 2007, Pages

Hemi-nested touchdown PCR combined with primer-template mismatch PCR for rapid isolation and sequencing of low molecular weight glutenin subunit gene family from a hexaploid wheat BAC library

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; ALCOHOL; GENOMIC DNA; GLUTENIN; GUANINE; PLANT DNA; THYMINE; GLUTEN; PRIMER DNA;

EID: 34250175858     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-8-18     Document Type: Article
Times cited : (17)

References (31)
  • 2
    • 0036579672 scopus 로고    scopus 로고
    • Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A
    • 10.1007/s10142-002-0056-4 12021852
    • SanMiguel P Ramakrishna W Bennetzen JL Busso CS Dubcovsky J Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A Funct Integr Genomics 2002 2 70-80 10.1007/ s10142-002-0056-4 12021852
    • (2002) Funct Integr Genomics , vol.2 , pp. 70-80
    • SanMiguel, P.1    Ramakrishna, W.2    Bennetzen, J.L.3    Busso, C.S.4    Dubcovsky, J.5
  • 3
    • 0034700133 scopus 로고    scopus 로고
    • Subgenome chromosome walking in wheat: A 450 kb physical contig in Triticum monococcum L. spans the Lr10 resistance locus in hexaploid wheat (T. aestivum L.)
    • 27242 11078510 10.1073/pnas.230361597
    • Stein N Feuillet C Wicker T Schlagenhauf E Keller B Subgenome chromosome walking in wheat: A 450 kb physical contig in Triticum monococcum L. spans the Lr10 resistance locus in hexaploid wheat (T. aestivum L.) Proc Natl Acad Sci USA 2000 97 13436-13441 27242 11078510 10.1073/ pnas.230361597
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 13436-13441
    • Stein, N.1    Feuillet, C.2    Wicker, T.3    Schlagenhauf, E.4    Keller, B.5
  • 4
    • 0028938692 scopus 로고
    • Chromosome landing: A paradigm for map-based gene cloning in plants with large genomes
    • 10.1016/S0168-9525(00)88999-4 7716809
    • Tanksley SD Ganal MW Martin GB Chromosome landing: A paradigm for map-based gene cloning in plants with large genomes Trends Genet 1995 11 63-68 10.1016/S0168-9525(00)88999-4 7716809
    • (1995) Trends Genet , vol.11 , pp. 63-68
    • Tanksley, S.D.1    Ganal, M.W.2    Martin, G.B.3
  • 5
    • 0024380080 scopus 로고
    • Specific-primer-directed DNA sequencing using automated fluorescence detection
    • 318263 2771640 10.1093/nar/17.15.6087
    • Kaiser RJ MacKellar SL Vinayak RS Sanders JZ Saavedra RA Hood LE Specific-primer-directed DNA sequencing using automated fluorescence detection Nucleic Acids Res 1989 17 6087-6102 318263 2771640 10.1093/nar/ 17.15.6087
    • (1989) Nucleic Acids Res , vol.17 , pp. 6087-6102
    • Kaiser, R.J.1    MacKellar, S.L.2    Vinayak, R.S.3    Sanders, J.Z.4    Saavedra, R.A.5    Hood, L.E.6
  • 6
    • 0023691425 scopus 로고
    • Genetic applications of an inverse polymerase chain reaction
    • 1203539 2852134
    • Ochman H Gerber AS Hartl D L Genetic applications of an inverse polymerase chain reaction Genetics 1988 120 621-623 1203539 2852134
    • (1988) Genetics , vol.120 , pp. 621-623
    • Ochman, H.1    Gerber, A.S.2    Hartl, D.L.3
  • 7
    • 0025310675 scopus 로고
    • Genomic walking and sequencing by oligo-cassette mediated polymerase chain reaction
    • 330879 2349129 10.1093/nar/18.10.3095
    • Rosenthal A Jones DSC Genomic walking and sequencing by oligo-cassette mediated polymerase chain reaction Nucleic Acids Res 1990 18 3095-3096 330879 2349129 10.1093/nar/18.10.3095
    • (1990) Nucleic Acids Res , vol.18 , pp. 3095-3096
    • Rosenthal, A.1    Jones, D.S.C.2
  • 8
    • 0037901773 scopus 로고    scopus 로고
    • T-linker-specific ligation PCR (T-linker PCR): An advanced PCR technique for chromosome walking or for isolation of tagged DNA ends
    • 162343 12799457 10.1093/nar/gng068
    • Yan Y An C Li L Gu J Tan G Chen Z T-linker-specific ligation PCR (T-linker PCR): An advanced PCR technique for chromosome walking or for isolation of tagged DNA ends Nucleic Acids Res 2003 31 e68 162343 12799457 10.1093/nar/gng068
    • (2003) Nucleic Acids Res , vol.31
    • Yan, Y.1    An, C.2    Li, L.3    Gu, J.4    Tan, G.5    Chen, Z.6
  • 9
    • 0032237875 scopus 로고    scopus 로고
    • Efficient amplification of insert end sequences from bacterial artificial chromosome clones by thermal asymmetric interlaced PCR
    • 10.1023/A:1007420918645
    • Liu YG Huang N Efficient amplification of insert end sequences from bacterial artificial chromosome clones by thermal asymmetric interlaced PCR Plant Mol Biol Rep 1998 16 175-181 10.1023/A:1007420918645
    • (1998) Plant Mol Biol Rep , vol.16 , pp. 175-181
    • Liu, Y.G.1    Huang, N.2
  • 10
    • 0001591767 scopus 로고
    • Colorimetric detection of specific DNA segments amplified by polymerase chain reactions
    • 286925 2648402 10.1073/pnas.86.7.2423
    • Kemp DJ Smith DB Foote SJ Samaras N Peterson MG Colorimetric detection of specific DNA segments amplified by polymerase chain reactions Proc Natl Acad Sci USA 1989 86 2423-2427 286925 2648402 10.1073/pnas.86.7.2423
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 2423-2427
    • Kemp, D.J.1    Smith, D.B.2    Foote, S.J.3    Samaras, N.4    Peterson, M.G.5
  • 11
    • 0025743732 scopus 로고
    • 'Touchdown' PCR to circumvent spurious priming during gene amplification
    • 10.1093/nar/19.14.4008 1861999 328507
    • Don RH Cox PT Wainwright BJ Baker K Mattick JS 'Touchdown' PCR to circumvent spurious priming during gene amplification Nucleic Acids Res 1991 19 4008 10.1093/nar/19.14.4008 1861999 328507
    • (1991) Nucleic Acids Res , vol.19 , pp. 4008
    • Don, R.H.1    Cox, P.T.2    Wainwright, B.J.3    Baker, K.4    Mattick, J.S.5
  • 12
    • 0029923481 scopus 로고    scopus 로고
    • High and low annealing temperatures increase both specificity and yield in TD and SD PCR
    • 8679209
    • Hecker KH Roux KH High and low annealing temperatures increase both specificity and yield in TD and SD PCR BioTechniques 1996 20 478-485 8679209
    • (1996) BioTechniques , vol.20 , pp. 478-485
    • Hecker, K.H.1    Roux, K.H.2
  • 13
    • 3042587720 scopus 로고    scopus 로고
    • The low-molecular-weight glutenin subunits of wheat gluten
    • 10.1016/j.jcs.2003.12.002
    • D'Ovidio R Masci S The low-molecular-weight glutenin subunits of wheat gluten J Cereal Sci 2004 39 321-339 10.1016/j.jcs.2003.12.002
    • (2004) J Cereal Sci , vol.39 , pp. 321-339
    • D'Ovidio, R.1    Masci, S.2
  • 14
    • 0031815928 scopus 로고    scopus 로고
    • The wheat low-molecular weight glutenin genes: Characterization of six new genes and progress in understanding gene family structure
    • 10.1007/s001220050797
    • Cassidy BG Dvorak J Anderson OD The wheat low-molecular weight glutenin genes: Characterization of six new genes and progress in understanding gene family structure Theor Appl Genet 1998 96 743-750 10.1007/ s001220050797
    • (1998) Theor Appl Genet , vol.96 , pp. 743-750
    • Cassidy, B.G.1    Dvorak, J.2    Anderson, O.D.3
  • 15
    • 0035088590 scopus 로고    scopus 로고
    • Cloning and expression of a LMW-i glutenin gene
    • 10.1006/jcrs.2000.0359
    • Cloutier S Ramptisch C Penner GA Lukow OM Cloning and expression of a LMW-i glutenin gene J Cereal Sci 2001 33 143-154 10.1006/jcrs.2000.0359
    • (2001) J Cereal Sci , vol.33 , pp. 143-154
    • Cloutier, S.1    Ramptisch, C.2    Penner, G.A.3    Lukow, O.M.4
  • 17
    • 27744563587 scopus 로고    scopus 로고
    • Classification of wheat low-molecular-weight glutenin subunit genes and its chromosome assignment by developing LMW-GS group-specific primers
    • 10.1007/s00122-005-0024-1 16187122
    • Long H Wei YM Yan ZH Baum B Nevo E Zheng YL Classification of wheat low-molecular-weight glutenin subunit genes and its chromosome assignment by developing LMW-GS group-specific primers Theor Appl Genet 2005 111 1251-1259 10.1007/s00122-005-0024-1 16187122
    • (2005) Theor Appl Genet , vol.111 , pp. 1251-1259
    • Long, H.1    Wei, Y.M.2    Yan, Z.H.3    Baum, B.4    Nevo, E.5    Zheng, Y.L.6
  • 18
    • 0344064930 scopus 로고    scopus 로고
    • Construction and characterization of a bacterial artificial chromosome (BAC) library of hexaploid wheat (Triticum aestivum L) and validation of genome coverage using locus-specific primers
    • 10.1139/g03-067 14608404
    • Nilmalgoda S Cloutier S Walichnowski AZ Construction and characterization of a bacterial artificial chromosome (BAC) library of hexaploid wheat (Triticum aestivum L) and validation of genome coverage using locus-specific primers Genome 2003 46 870-878 10.1139/g03-067 14608404
    • (2003) Genome , vol.46 , pp. 870-878
    • Nilmalgoda, S.1    Cloutier, S.2    Walichnowski, A.Z.3
  • 19
    • 0024636409 scopus 로고
    • Molecular characterization of an active wheat LMW glutenin gene and its relation to other wheat and barley prolamin genes
    • 10.1007/BF00332234 2733691
    • Colot V Bartels D Thompson R Flavell R Molecular characterization of an active wheat LMW glutenin gene and its relation to other wheat and barley prolamin genes Mol Gen Genet 1989 216 81-90 10.1007/BF00332234 2733691
    • (1989) Mol Gen Genet , vol.216 , pp. 81-90
    • Colot, V.1    Bartels, D.2    Thompson, R.3    Flavell, R.4
  • 20
    • 24044540748 scopus 로고    scopus 로고
    • Expression analysis and physical mapping of low molecular-weight glutenin loci in hexaploid wheat (Triticum aestivum L.)
    • 10.1139/g05-005 16121237
    • Özdemir N Cloutier S Expression analysis and physical mapping of low molecular-weight glutenin loci in hexaploid wheat (Triticum aestivum L.) Genome 2005 48 401-410 10.1139/g05-005 16121237
    • (2005) Genome , vol.48 , pp. 401-410
    • Özdemir, N.1    Cloutier, S.2
  • 21
    • 0034663473 scopus 로고    scopus 로고
    • Discrimination of primer 3′-nucleotide mismatch by Taq DNA polymerase during polymerase chain reaction
    • 10.1006/abio.2000.4635 10933850
    • Ayyadevara S Thaden JJ Shmookler Reis RJ Discrimination of primer 3′-nucleotide mismatch by Taq DNA polymerase during polymerase chain reaction Anal Biochem 2000 284 11-18 10.1006/abio.2000.4635 10933850
    • (2000) Anal Biochem , vol.284 , pp. 11-18
    • Ayyadevara, S.1    Thaden, J.J.2    Shmookler Reis, R.J.3
  • 22
    • 0025305576 scopus 로고
    • Effects of primer-template mismatches on the polymerase chain reaction: Human immunodeficiency virus type 1 model studies
    • 330356 2179874 10.1093/nar/18.4.999
    • Kwok S Kellogg DE McKinney N Spasic D Godal L Levenson C Sninsky JJ Effects of primer-template mismatches on the polymerase chain reaction: Human immunodeficiency virus type 1 model studies Nucleic Acids Res 1990 18 999-1005 330356 2179874 10.1093/nar/18.4.999
    • (1990) Nucleic Acids Res , vol.18 , pp. 999-1005
    • Kwok, S.1    Kellogg, D.E.2    McKinney, N.3    Spasic, D.4    Godal, L.5    Levenson, C.6    Sninsky, J.J.7
  • 23
    • 0026698636 scopus 로고
    • Extension of base mispairs by Taq DNA polymerase: Implications for single nucleotide discrimination in PCR
    • 334186 1408758 10.1093/nar/20.17.4567
    • Huang MM Arnheim N Goodman MF Extension of base mispairs by Taq DNA polymerase: Implications for single nucleotide discrimination in PCR Nucleic Acids Res 1992 20 4567-4573 334186 1408758 10.1093/nar/20.17.4567
    • (1992) Nucleic Acids Res , vol.20 , pp. 4567-4573
    • Huang, M.M.1    Arnheim, N.2    Goodman, M.F.3
  • 25
    • 0033560952 scopus 로고    scopus 로고
    • Nucleotide analogs facilitate base conversion with 3′ mismatch primers
    • 148388 10101188 10.1093/nar/27.8.1810
    • Day PJ Bergstrom D Hammer RP Barany F Nucleotide analogs facilitate base conversion with 3′ mismatch primers Nucleic Acids Res 1999 27 1810-1818 148388 10101188 10.1093/nar/27.8.1810
    • (1999) Nucleic Acids Res , vol.27 , pp. 1810-1818
    • Day, P.J.1    Bergstrom, D.2    Hammer, R.P.3    Barany, F.4
  • 26
    • 0025298979 scopus 로고
    • Simple, sensitive, and specific detection of human immunodeficiency virus type I in clinical specimens by polymerase chain reaction with nested primers
    • 267988 2380380
    • Albert J Fenyo EM Simple, sensitive, and specific detection of human immunodeficiency virus type I in clinical specimens by polymerase chain reaction with nested primers J Clin Microbiol 1990 28 1560-1564 267988 2380380
    • (1990) J Clin Microbiol , vol.28 , pp. 1560-1564
    • Albert, J.1    Fenyo, E.M.2
  • 27
    • 34250218863 scopus 로고    scopus 로고
    • Primer3
    • Primer3 http://frodo.wi.mit.edu/
  • 28
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
    • 9521921
    • Ewing B Hillier L Wendel MC Green P Base-calling of automated sequencer traces using Phred. I. Accuracy assessment Genome Res 1998 8 175-185 9521921
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendel, M.C.3    Green, P.4
  • 29
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • 310812 10508846 10.1101/gr.9.9.868
    • Huang X Madan A CAP3: A DNA sequence assembly program Genome Res 1999 9 868-877 310812 10508846 10.1101/gr.9.9.868
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 30
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 308517 7984417 10.1093/nar/22.22.4673
    • Higgins D Thompson J Gibson T Thompson JD Higgins DG Gibson TJ CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 1994 22 4673-4680 308517 7984417 10.1093/ nar/22.22.4673
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Higgins, D.1    Thompson, J.2    Gibson, T.3    Thompson, J.D.4    Higgins, D.G.5    Gibson, T.J.6
  • 31
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • 10.1093/bib/5.2.150 15260895
    • Kumar S Tamura K Nei M MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 2004 5 150-163 10.1093/bib/5.2.150 15260895
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3


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