An AFLP-based procedure for the efficient mapping of mutations and DNA probes in barley

Genetics

Volumn 149, Issue 4, 1998, Pages 2039-2056

  Castiglioni, P ^c   Pozzi, C ^a   Heun, M ^b   Terzi, V ^c   Muller K J ^a   Rohde, W ^a   Salamini, F ^a  

^a MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^b NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

^c Ist Sperim per la Cerealicoltura ^*

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

AGRICULTURE; ARTICLE; BARLEY; CHROMOSOME 1; CHROMOSOME 2; CHROMOSOME 5; CROSS BREEDING; DNA PROBE; GENE AMPLIFICATION; GENE LINKAGE GROUP; GENE LOCUS; GENE MAPPING; GENE MUTATION; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

ALLELES; BASE SEQUENCE; CHROMOSOME MAPPING; CROSSES, GENETIC; DNA PRIMERS; DNA PROBES; GENES, PLANT; HORDEUM; LINKAGE (GENETICS); MUTATION; PHENOTYPE; POLYMORPHISM, GENETIC; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH;

EMBRYOPHYTA; HORDEUM VULGARE SUBSP. VULGARE;

EID: 0031928373     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (62)

1. BECKER, J., and M. HEUN, 1995 Mapping of digested and undigested random amplified microsatellite polymorphisms in barley. Genome 38: 991-998.
2. BECKER, J., P. VOS, M. KUIPER, F. SALAMINI and M. HEUN, 1995 Combined mapping of AFLP and RFLP markers in barley. Mol. Gen. Genet. 249: 65-73.
3. BOWMAN, J. L., D. R. SMYTH and E. M. MEYEROWITZ, 1989 Genes directing flower development in Arabidopsis. Plant Cell 1: 37-52.
4. BÜSCHGES, R., K. HOLLRICHER, R. PANSTRUNGA, R. SIMONS, G. SIMONS et al., 1997 The barley Mlo gene: a novel control element of plant pathogen resistance. Cell 88: 695-705.
5. CIVARDI, L., Y. J. XIA, K. J. EDWARDS, P. S. SCHNABLE and B. J. NIKOLAU, 1994 The relationship between genetic and physical distances in the cloned a1-sh2 interval of the Zea mays L. genome. Proc. Natl. Acad. Sci. USA 91: 8268-8272.
6. DE SCENZO, R. A., R. P. WISE and M. MAHADEVAPPA, 1994 High resolution mapping of Hor1/MLa/Hor2 region on chromosome 5S in barley. Mol. Plant-Microbe Interact. 7: 657-666
7. FABRI C. O., and A. R. SCHÄFFNER, 1994 An Arabidopsis thaliana RFLP mapping set to localize mutations to chromosomal regions. Plant J. 5: 149-156.
8. FEINBERG, A. P., and B. VOGELSTEIN, 1984 A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 137: 266-267.
9. FRARY, A., G. G. PRESTING and S. D. TANKSLEY 1996 Molecular mapping of the centromeres of tomato chromosomes 7 and 9. Mol. Gen. Genet. 250: 295-304.
10. GEBHARDT, C., E. RITTER, T. DEBENER, U. SCHACHTSCHABLE, B. WALKEMEIER et al., 1989 RFLP analysis and linkage mapping in Solanum tuberosum. Theor. Appl. Genet. 78: 65-75.
11. GRANER, A., H. SIEDLER, A. JAHOOR, R. G. HERRMANN and G. WENZEL, 1990 Assessment of the degree and type of restriction fragment length polymorphism in barley (Hordeum vulgare). Theor. Appl. Genet. 80: 826-832.
12. GRANER, A., A. JAHOOR, J. SCHONDELMAIER, H. SIEDLER, K. PILLER et al., 1991 Construction of an RFLP map of barley. Theor. Appl. Genet. 83: 250-256.
13. GRANER, A., E. BAUER, A. KELLERMANN, S. KIRCHNER, J. K. MURAYA et al., 1994 Progress of RFLP-map construction in winter barley. Barley Genet. Newslett. 23: 53-59.
14. HART, G. E., 1994 RFLP maps of bread wheat, pp. 327-358 in DNA-Based Markers in Plants, edited by R. L. PHILLIPS and I. K. VASIL. Kluwer Academic Publishers, The Netherlands.
15. HAYES, P., and K. MESZAROS, 1997 Mapping in Dicktoo X Morex. http://wheat.pw.usda.gov.
16. HEUN, M., E. KENNEDY, J. A. ANDERSON, N. L. V. LAPITAN, M. E. SORRELLS et al., 1991 Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare). Genome 34: 437-447.
17. KANAZIN, V., E. ANAIEV and T. BLAKE, 1993 Variability among members of the Hor-2 multigene family. Genome 36: 397-403.
18. KASHA, K. J., and A. KLEINHOFS, 1994 Mapping of the barley cross Harrington X TR306. Barley Genet. Newslett. 23: 65-69
19. KJAER, B., J. JENSEN and H. GIESE, 1995 Quantitative trait loci for heading date and straw characters in barley. Genome 38: 1098-1104.
20. KLEINHOFS, A., A. KILIAN, M. A. SAGHAI-MAROOF, R. M. BIYASHEV, P. HAYES et al., 1993 A molecular, isozyme and morphological map of barley (Hordeum vulgare) genome. Theor. Appl. Genet. 86: 705-712.
21. KONIECZNY, A., and F. M. AUSUBEL, 1993 A procedure for mapping Arabidopsis mutations using co-dominant ecotype specific PCR-based markers. Plant J. 4: 403-410.
22. LANDER, E. S., P. GREEN, J. ABRAHAMSON, A. BARLOW, M. J. DALY et al., 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
23. LANGRIDGE, P., A. KARAKOUSIS, J. KRETSCHMER, S. MANNING and S. LOGUE, 1996a Mapping in Chebec X Harrington. Http:// wheat.pw.usda.gov/.
24. LANGRIDGE, P., A. KARAKOUSIS, J. KRETSCHMER, S. MANNING, R. ISLAM et al., 1996b Mapping in Clipper X Sahara. http://wheat.pw. usda.gov/.
25. LANGRIDGE, P., A. KARAKOUSIS, J. KRETSCHMER, S. MANNING and S. LOGUE, 1996c Mapping in Galleon X Haruna nijo. http:// wheat.pw.usda.gov/.
26. LAURIE, D. A., J. W. SNAPE and M. D. GALE, 1992 DNA marker techniques for genetic analysis in barley, pp. 115-132 in Barley: Genetics, Biochemistry, Molecular Biology and Biotechnology, edited by P. R. SHEWRY. C.A.B. International, Oxon, U.K.
27. LAURIE, D. A., N. PRATCHETT, K. M. DEVOS, I. J. LEITCH and M. GALE, 1993 The distribution of RFLP markers on chromosome 2(2H) of barley in relation to the physical and genetic location of 5S rDNA. Theor. Appl. Genet. 87: 177-183.
28. LAURIE, D. A., N. PRATCHETT, J. H. BEZANT and J. W. SNAPE, 1995 RFLP mapping of five major genes and eight quantitative trait loci controlling flowering time in a winter X spring barley (Hordeum vulgare L.) cross. Genome 38: 575-585.
29. LAURIE, D. A., N. PRATCHETT, R. L. ALLEN and S. S. HANTKE, 1996 RFLP mapping of the barley homeotic mutant lax-a. Theor. Appl. Genet. 93: 81-85.
30. LINCOLN, S. E., and E. S. LANDER, 1992 Systematic detection of errors in genetic linkage data. Genomics 14: 604-610
31. LIU, C. J., M. HEUN and M. D. GALE, 1993 Intrachromosomal mapping of seven biochemical loci in barley, Hordeum vulgare. Theor. Appl. Genet. 87: 94-96.
32. MENA, M., B. A. AMBROSE, R. B. MEELEY, S. P. BRIGGS, M. F. YANOFSKY et al., 1986 Diversification of C-function activity in maize flower development. Science 274: 1537-1540.
33. MICHELMORE, R. W., I. PARAN and R. V. KESSELI, 1991 Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. USA 88: 9828-9832.
34. MÜLLER, K. J., N. ROMANO, O. GERSTNER, F. GARCIA-MAROTO, C. POZZI et al., 1995 The barley Hooded mutation caused by a duplication in a homeobox gene intron. Nature 374: 727-730.
35. NANDI, S., P. K. SUBUDHI, D. SENADHIRA, N. L. MANIGBAS, S. SENMANDI et al. 1997 Mapping QTLs for submergence tolerance in rice by AFLP analysis and selective genotyping. Mol. Gen. Genet. 255: 1-8.
36. NILSSON, N. O., T. SÄLL and B. O. BENGTSSON, 1993 Chiasma and recombination data in plants: are they compatible? Trends Genet. 9: 344-348.
37. OKAGAKI, R. J., and F. W. WEIL, 1997 Analysis of recombination sites within the maize waxy locus. Genetics 147: 815-821.
38. PECCHIONI, N., A. M. STANCA, V. TERZI and L. CATTIVELLI, 1993 RFLP analysis of highly polymorphic loci in barley. Theor. Appl. Genet. 85: 926-930.
39. POWELL, W., W. T. B. THOMAS, E. BAIRD, P. LAWRENCE, A. BOOTH et al., 1997 Analysis of quantitative traits in barley by the use of amplified fragment length polymorphism. Heredity 79: 48-59.
40. QI, X., and P. LINDHOUT, 1997 Development of AFLP markers in barley. Mol. Gen. Genet. 254: 330-336.
41. QI, X., P. STAM and P. LINDHOUT, 1997 Use of the locus specific AFLP markers to construct a high density molecular map in barley. Theor. Appl. Genet. 96: 376-384.
42. RÖDER, M., N. L. V. LAPITAN, M. E. SORRELLS and S. D. TANKSLEY, 1993 Genetic and physical mapping of the barley telomeres. Mol. Gen. Genet. 238: 294-303.
43. ROHDE, W., 1996 Inverse sequence-tagged repeat (ISTR) analysis, a novel and universal PCR-based technique for genome analysis in the plant and animal kingdom. J. Genet. Breed. 50: 249-261.
44. ROUPPE VAN DER VOORT, J. N. A. M., P. VAN ZANDVOORT, H. J. VAN ECK, R. T. FOLKERTSMA, R. C. B. HUTTEN et al., 1997 Use of allele specificity of comigrating AFLP markers to align genetic maps from different potato genotypes. Mol. Gen. Genet. 255: 438-447.
45. RUSSELL, J. R., J. D. FULLER, M. MACAULAY, B. G. HATZ, A. JAHOOR et al., 1997 Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs. Theor. Appl. Genet. 95: 714-722.
46. SAGHAI-MAROOF, M. A., K. M. SOLIMAN, R. A. JORGENSEN and R. W. ALLARD, 1984 Ribosomal DNA length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. USA 91: 5466-5470.
47. SÄLL, T., and N.-O. NILLSON, 1994 Crossover distribution in barley analysed through RFLP linkage data. Theor. Appl. Genet. 89: 211-216.
48. SCHWEIZER, G. F., M. BAUMER, G. DANIEL, H. RUGEL and M. S. RÖDER, 1995 RFLP markers linked to scald (Rhynchosporium secalis) reistance gene Rh2 in barley. Theor. Appl. Genet 90: 920-924.
49. SHERMAN, J. D., A. L. FENWICK, D. M. NAMUTH and N. L. V. LAPITAN, 1995 A barley RFLP map: alignment of three barley maps and comparison to Gramineae species. Theor. Appl. Genet 91: 681-690.
50. SOGAARD, B., and P. WETTSTEIN-KNOWLES, 1987 Barley: genes and chromosomes. Carlsberg Res. Commun. 52: 123-196.
51. STAM, P., 1993 Construction of integrated genetic linkage maps by means of a new computer package: JoinMap. Plant J. 3: 739-744.
52. SZOSTAK, J. W., T. L. ORR-WEAVER, R. J. ROTHSTEIN and F. W. STAHL, 1983 The double-strand-break repair model for recombination. Cell 33: 25-35.
53. TANKSLEY, S. D., M. W. GANAL, J. P. PRINCE, M. C. DEVINCENTE, M. W. BONIERBALE et al., 1992 High density molecular linkage maps of the tomato and potato genomes: biological inferences and practical applications. Genetics 132: 1141-1160.
54. TAZHIN, O. T., 1980 The linkage of the genes mo5 and n in barley. Barley Genet. Newslett. 10: 69-72.
55. THOMAS, W. T. B., W. POWELL, R. WAUGH, K. J. CHALMERS, U. M. BARUA et al., 1995 Detection of quantitative trait loci for agronomic, yield, grain and disease characters in spring barley (Hordeum vulgare L.). Theor. Appl. Genet. 91: 1037-1047.
56. TINKER, N., D. E. MATHER, B. G. ROSSNAGELB, K. J. KASHA, A. KLEINHOFS et al., 1996 Regions of the genome that affect agronomic performance in two-row barley. Crop. Sci. 36: 1053-1062.
57. VAN ECK, H. J., J. R. VAN DER VOORT, J. DRAAISTRA, E. VAN ZANDVOORT and H. VAN ENCKEVORT, 1995 The inheritance and chromosomal localization of AFLP markers in a non-inbred potato offspring. Mol. Breeding 1: 397-410.
58. VOS, P., R. HOGERS, M. BLEEKE, M. REIJANS, T. VAN DE LEE et al., 1995 AFLP: a new concept for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414.
59. WAUGH, R., N. BONAR, E. BAIRD, B. THOMAS, A. GRANER et al., 1997 Homology of AFLP products in three mapping populations of barley. Mol. Gen. Genet. 255: 311-321.
60. WILLIAMS, J. G. K., R. S. REITER, R. M. YOUNG and P. A. SCOLNIK, 1993 Genetic mapping of mutations using phenotypic pools and mapped RAPD markers. Nucleic Acids Res. 21: 2697-2702.
61. XU, X., A.-P. HSIA, L. ZHANG, B. J. NIKOLAU and P. SCHNABLE, 1995 Meiotic recombination break points resolve at high rates at the 5′ end of a maize coding sequence. Plant Cell 7: 2151-2161.
62. ZABEAU, M., and P. VOS, 1993 Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Application n. 92402629.7, publication n. 0 534 858 A1.