-
2
-
-
84884994218
-
The cancer genome atlas pan-cancer analysis project
-
3919969 24071849
-
Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, et al. The cancer genome atlas pan-cancer analysis project. Nat Genet. 2013;45:1113-20.
-
(2013)
Nat Genet
, vol.45
, pp. 1113-1120
-
-
Weinstein, J.N.1
Collisson, E.A.2
Mills, G.B.3
Shaw, K.R.4
Ozenberger, B.A.5
Ellrott, K.6
-
3
-
-
84933584819
-
-
Accessed 10 June 2015
-
TCGA Network Publications. http://cancergenome.nih.gov/publications/TCGANetworkPublications. Accessed 10 June 2015
-
TCGA Network Publications
-
-
-
4
-
-
84895918197
-
-
Accessed 10 June 2015
-
TCGA Data Portal. https://tcga-data.nci.nih.gov/tcga/. Accessed 10 June 2015
-
TCGA Data Portal
-
-
-
5
-
-
84886099830
-
Mutations in regulators of the epigenome and their connections to global chromatin patterns in cancer
-
1:CAS:528:DC%2BC3sXhsFOltbfI 24105274
-
Plass C, Pfister SM, Lindroth AM, Bogatyrova O, Claus R, Lichter P. Mutations in regulators of the epigenome and their connections to global chromatin patterns in cancer. Nat Rev Genet. 2013;14:765-80.
-
(2013)
Nat Rev Genet
, vol.14
, pp. 765-780
-
-
Plass, C.1
Pfister, S.M.2
Lindroth, A.M.3
Bogatyrova, O.4
Claus, R.5
Lichter, P.6
-
7
-
-
84881396090
-
Computational approaches to identify functional genetic variants in cancer genomes
-
1:CAS:528:DC%2BC3sXhtFygur3E 3919555 23900255
-
Gonzalez-Perez A, Mustonen V, Reva B, Ritchie GR, Creixell P, Karchin R, et al. Computational approaches to identify functional genetic variants in cancer genomes. Nat Methods. 2013;10:723-9.
-
(2013)
Nat Methods
, vol.10
, pp. 723-729
-
-
Gonzalez-Perez, A.1
Mustonen, V.2
Reva, B.3
Ritchie, G.R.4
Creixell, P.5
Karchin, R.6
-
8
-
-
84882692468
-
Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data
-
1:CAS:528:DC%2BC3sXhtlKmu77L 3748065 23977046
-
Guo Y, Sheng Q, Li J, Ye F, Samuels DC, Shyr Y. Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data. PLoS One. 2013;8, e71462.
-
(2013)
PLoS One
, vol.8
-
-
Guo, Y.1
Sheng, Q.2
Li, J.3
Ye, F.4
Samuels, D.C.5
Shyr, Y.6
-
9
-
-
84933584820
-
-
Accessed 10 June 2015
-
Wanderer API. http://maplab.cat/wanderer-api. Accessed 10 June 2015
-
Wanderer API
-
-
-
10
-
-
84875740314
-
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal
-
4160307 23550210
-
Gao J, Aksoy BA, Dogrusoz U, Dresdner G, Gross B, Sumer SO, et al. Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci Signal. 2013;6:pl1.
-
(2013)
Sci Signal
, vol.6
, pp. pl1
-
-
Gao, J.1
Aksoy, B.A.2
Dogrusoz, U.3
Dresdner, G.4
Gross, B.5
Sumer, S.O.6
-
11
-
-
84881599054
-
-
Accessed 10 June 2015
-
Regulome Explorer. http://explorer.cancerregulome.org/. Accessed 10 June 2015
-
Regulome Explorer
-
-
-
12
-
-
0036079158
-
The human genome browser at UCSC
-
1:CAS:528:DC%2BD38Xks12hs7s%3D 186604 12045153
-
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, et al. The human genome browser at UCSC. Genome Res. 2002;12:996-1006.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
-
13
-
-
78651072464
-
Alternative splicing of SLC39A14 in colorectal cancer is regulated by the Wnt pathway
-
3013455 20938052 002998
-
Thorsen K, Mansilla F, Schepeler T, Oster B, Rasmussen MH, Dyrskjot L, et al. Alternative splicing of SLC39A14 in colorectal cancer is regulated by the Wnt pathway. Mol Cell Proteomics. 2011;10:M110 002998.
-
(2011)
Mol Cell Proteomics
, vol.10
, pp. M110
-
-
Thorsen, K.1
Mansilla, F.2
Schepeler, T.3
Oster, B.4
Rasmussen, M.H.5
Dyrskjot, L.6
-
14
-
-
84901761987
-
TCGA-assembler: Open-source software for retrieving and processing TCGA data
-
1:CAS:528:DC%2BC2cXovValu7s%3D 4387197 24874569
-
Zhu Y, Qiu P, Ji Y. TCGA-assembler: open-source software for retrieving and processing TCGA data. Nat Methods. 2014;11:599-600.
-
(2014)
Nat Methods
, vol.11
, pp. 599-600
-
-
Zhu, Y.1
Qiu, P.2
Ji, Y.3
-
15
-
-
84933584821
-
-
Accessed 10 June 2015
-
GDAC Firehose. http://gdac.broadinstitute.org/. Accessed 10 June 2015
-
GDAC Firehose
-
-
-
16
-
-
34347391707
-
Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB)
-
1:CAS:528:DC%2BD2sXnvVWku78%3D 1899122 17525135
-
Zhang J, Finney RP, Rowe W, Edmonson M, Yang SH, Dracheva T, et al. Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB). Genome Res. 2007;17:1111-7.
-
(2007)
Genome Res
, vol.17
, pp. 1111-1117
-
-
Zhang, J.1
Finney, R.P.2
Rowe, W.3
Edmonson, M.4
Yang, S.H.5
Dracheva, T.6
-
17
-
-
84885137302
-
Exploring TCGA Pan-Cancer data at the UCSC Cancer Genomics Browser
-
3788369 24084870
-
Cline MS, Craft B, Swatloski T, Goldman M, Ma S, Haussler D, et al. Exploring TCGA Pan-Cancer data at the UCSC Cancer Genomics Browser. Sci Rep. 2013;3:2652.
-
(2013)
Sci Rep
, vol.3
, pp. 2652
-
-
Cline, M.S.1
Craft, B.2
Swatloski, T.3
Goldman, M.4
Ma, S.5
Haussler, D.6
-
18
-
-
84933584823
-
-
Accessed 10 June 2015
-
TCGA analytical tools. https://tcga-data.nci.nih.gov/tcga/tcgaAnalyticalTools.jsp. Accessed 10 June 2015
-
TCGA Analytical Tools
-
-
-
19
-
-
84941138065
-
MethHC: A database of DNA methylation and gene expression in human cancer
-
4383953 25398901
-
Huang WY, Hsu SD, Huang HY, Sun YM, Chou CH, Weng SL, et al. MethHC: a database of DNA methylation and gene expression in human cancer. Nucleic Acids Res. 2015;43:D856-61.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D856-D861
-
-
Huang, W.Y.1
Hsu, S.D.2
Huang, H.Y.3
Sun, Y.M.4
Chou, C.H.5
Weng, S.L.6
-
20
-
-
84875376002
-
MENT: Methylation and expression database of normal and tumor tissues
-
1:CAS:528:DC%2BC38XhvVyrtb7I 23219992
-
Baek SJ, Yang S, Kang TW, Park SM, Kim YS, Kim SY. MENT: methylation and expression database of normal and tumor tissues. Gene. 2013;518:194-200.
-
(2013)
Gene
, vol.518
, pp. 194-200
-
-
Baek, S.J.1
Yang, S.2
Kang, T.W.3
Park, S.M.4
Kim, Y.S.5
Kim, S.Y.6
-
21
-
-
84933584824
-
-
Accessed 10 June 2015
-
Wanderer code repository. https://sourceforge.net/projects/tcga-wanderer/. Accessed 10 June 2015
-
Wanderer Code Repository
-
-
|