메뉴 건너뛰기




Volumn 8, Issue 1, 2015, Pages

Wanderer, an interactive viewer to explore DNA methylation and gene expression data in human cancer

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CANCER TISSUE; COLON ADENOCARCINOMA; CONTROLLED STUDY; CPG ISLAND; DNA METHYLATION; EPIGENETICS; EXON; GENE EXPRESSION PROFILING; GENE LOCATION; GENE LOCUS; GENE PROBE; GENETIC DISTANCE; HUMAN; NEOPLASM; PRIORITY JOURNAL; RNA SEQUENCE;

EID: 84933497192     PISSN: None     EISSN: 17568935     Source Type: Journal    
DOI: 10.1186/s13072-015-0014-8     Document Type: Article
Times cited : (178)

References (21)
  • 3
    • 84933584819 scopus 로고    scopus 로고
    • Accessed 10 June 2015
    • TCGA Network Publications. http://cancergenome.nih.gov/publications/TCGANetworkPublications. Accessed 10 June 2015
    • TCGA Network Publications
  • 4
    • 84895918197 scopus 로고    scopus 로고
    • Accessed 10 June 2015
    • TCGA Data Portal. https://tcga-data.nci.nih.gov/tcga/. Accessed 10 June 2015
    • TCGA Data Portal
  • 5
    • 84886099830 scopus 로고    scopus 로고
    • Mutations in regulators of the epigenome and their connections to global chromatin patterns in cancer
    • 1:CAS:528:DC%2BC3sXhsFOltbfI 24105274
    • Plass C, Pfister SM, Lindroth AM, Bogatyrova O, Claus R, Lichter P. Mutations in regulators of the epigenome and their connections to global chromatin patterns in cancer. Nat Rev Genet. 2013;14:765-80.
    • (2013) Nat Rev Genet , vol.14 , pp. 765-780
    • Plass, C.1    Pfister, S.M.2    Lindroth, A.M.3    Bogatyrova, O.4    Claus, R.5    Lichter, P.6
  • 7
    • 84881396090 scopus 로고    scopus 로고
    • Computational approaches to identify functional genetic variants in cancer genomes
    • 1:CAS:528:DC%2BC3sXhtFygur3E 3919555 23900255
    • Gonzalez-Perez A, Mustonen V, Reva B, Ritchie GR, Creixell P, Karchin R, et al. Computational approaches to identify functional genetic variants in cancer genomes. Nat Methods. 2013;10:723-9.
    • (2013) Nat Methods , vol.10 , pp. 723-729
    • Gonzalez-Perez, A.1    Mustonen, V.2    Reva, B.3    Ritchie, G.R.4    Creixell, P.5    Karchin, R.6
  • 8
    • 84882692468 scopus 로고    scopus 로고
    • Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data
    • 1:CAS:528:DC%2BC3sXhtlKmu77L 3748065 23977046
    • Guo Y, Sheng Q, Li J, Ye F, Samuels DC, Shyr Y. Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data. PLoS One. 2013;8, e71462.
    • (2013) PLoS One , vol.8
    • Guo, Y.1    Sheng, Q.2    Li, J.3    Ye, F.4    Samuels, D.C.5    Shyr, Y.6
  • 9
    • 84933584820 scopus 로고    scopus 로고
    • Accessed 10 June 2015
    • Wanderer API. http://maplab.cat/wanderer-api. Accessed 10 June 2015
    • Wanderer API
  • 10
    • 84875740314 scopus 로고    scopus 로고
    • Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal
    • 4160307 23550210
    • Gao J, Aksoy BA, Dogrusoz U, Dresdner G, Gross B, Sumer SO, et al. Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci Signal. 2013;6:pl1.
    • (2013) Sci Signal , vol.6 , pp. pl1
    • Gao, J.1    Aksoy, B.A.2    Dogrusoz, U.3    Dresdner, G.4    Gross, B.5    Sumer, S.O.6
  • 11
    • 84881599054 scopus 로고    scopus 로고
    • Accessed 10 June 2015
    • Regulome Explorer. http://explorer.cancerregulome.org/. Accessed 10 June 2015
    • Regulome Explorer
  • 13
  • 14
    • 84901761987 scopus 로고    scopus 로고
    • TCGA-assembler: Open-source software for retrieving and processing TCGA data
    • 1:CAS:528:DC%2BC2cXovValu7s%3D 4387197 24874569
    • Zhu Y, Qiu P, Ji Y. TCGA-assembler: open-source software for retrieving and processing TCGA data. Nat Methods. 2014;11:599-600.
    • (2014) Nat Methods , vol.11 , pp. 599-600
    • Zhu, Y.1    Qiu, P.2    Ji, Y.3
  • 15
    • 84933584821 scopus 로고    scopus 로고
    • Accessed 10 June 2015
    • GDAC Firehose. http://gdac.broadinstitute.org/. Accessed 10 June 2015
    • GDAC Firehose
  • 16
    • 34347391707 scopus 로고    scopus 로고
    • Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB)
    • 1:CAS:528:DC%2BD2sXnvVWku78%3D 1899122 17525135
    • Zhang J, Finney RP, Rowe W, Edmonson M, Yang SH, Dracheva T, et al. Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB). Genome Res. 2007;17:1111-7.
    • (2007) Genome Res , vol.17 , pp. 1111-1117
    • Zhang, J.1    Finney, R.P.2    Rowe, W.3    Edmonson, M.4    Yang, S.H.5    Dracheva, T.6
  • 17
    • 84885137302 scopus 로고    scopus 로고
    • Exploring TCGA Pan-Cancer data at the UCSC Cancer Genomics Browser
    • 3788369 24084870
    • Cline MS, Craft B, Swatloski T, Goldman M, Ma S, Haussler D, et al. Exploring TCGA Pan-Cancer data at the UCSC Cancer Genomics Browser. Sci Rep. 2013;3:2652.
    • (2013) Sci Rep , vol.3 , pp. 2652
    • Cline, M.S.1    Craft, B.2    Swatloski, T.3    Goldman, M.4    Ma, S.5    Haussler, D.6
  • 18
    • 84933584823 scopus 로고    scopus 로고
    • Accessed 10 June 2015
    • TCGA analytical tools. https://tcga-data.nci.nih.gov/tcga/tcgaAnalyticalTools.jsp. Accessed 10 June 2015
    • TCGA Analytical Tools
  • 19
    • 84941138065 scopus 로고    scopus 로고
    • MethHC: A database of DNA methylation and gene expression in human cancer
    • 4383953 25398901
    • Huang WY, Hsu SD, Huang HY, Sun YM, Chou CH, Weng SL, et al. MethHC: a database of DNA methylation and gene expression in human cancer. Nucleic Acids Res. 2015;43:D856-61.
    • (2015) Nucleic Acids Res , vol.43 , pp. D856-D861
    • Huang, W.Y.1    Hsu, S.D.2    Huang, H.Y.3    Sun, Y.M.4    Chou, C.H.5    Weng, S.L.6
  • 20
    • 84875376002 scopus 로고    scopus 로고
    • MENT: Methylation and expression database of normal and tumor tissues
    • 1:CAS:528:DC%2BC38XhvVyrtb7I 23219992
    • Baek SJ, Yang S, Kang TW, Park SM, Kim YS, Kim SY. MENT: methylation and expression database of normal and tumor tissues. Gene. 2013;518:194-200.
    • (2013) Gene , vol.518 , pp. 194-200
    • Baek, S.J.1    Yang, S.2    Kang, T.W.3    Park, S.M.4    Kim, Y.S.5    Kim, S.Y.6
  • 21
    • 84933584824 scopus 로고    scopus 로고
    • Accessed 10 June 2015
    • Wanderer code repository. https://sourceforge.net/projects/tcga-wanderer/. Accessed 10 June 2015
    • Wanderer Code Repository


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.