Exploring TCGA pan-cancer data at the UCSC cancer genomics browser

Scientific Reports

Volumn 3, Issue , 2013, Pages

  Cline, Melissa S ^a   Craft, Brian ^a   Swatloski, Teresa ^a   Goldman, Mary ^a   Ma, Singer ^a   Haussler, David ^a   Zhu, Jingchun ^a  

^a University of California Santa Cruz   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; BIOLOGY; GENETIC DATABASE; GENETICS; GENOMICS; HUMAN; METABOLISM; METHODOLOGY; NEOPLASM; WEB BROWSER;

ANIMALS; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; GENOMICS; HUMANS; NEOPLASMS; WEB BROWSER;

EID: 84885137302     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep02652     Document Type: Article

References (13)

1. Goldman, M. et al. The UCSC Cancer Genomics Browser: Update 2013. Nucleic Acids Res. 41, D949-954 (2013).
2. Zhu, J. et al. The UCSC Cancer Genomics Browser. Nat Methods 6, 239-240 (2009).
3. Schroeder, M. P., Gonzalez-Perez, A. & Lopez-Bigas, N. Visualizing multidimensional cancer genomics data. Genome Med. 5, 9 (2013).
4. Cancer Genome Atlas Research Network. Genomic and epigenomic landscapes of adult De novo acute myeloid leukemia. N Engl J Med. 368, 2059-2074 (2013).
5. Stuart, M. J. et al. The cancer genome atlas pan-Cancer analysis project. Nat.Genet. 45, 1113-1120 (2013).
6. Stang, A., Pohlabeln, H., Muller, K. M., Jahn, I., Giersiepen, K. & Jockel, K. H. Diagnostic agreement in the histopathological evaluation of lung cancer tissue in a population-Based case-Control study. Lung Cancer 52, 29-36 (2006).
7. Stinchcombe, T. E. & Socinski, M. A. Current treatments for advanced stage nonsmall cell lung cancer. Proc Am Thorac Soc. 6, 233-41 (2009).
8. Fields, A. & Justilien, V. The guanine nucleotide exchange factor (GEF) Ect2 is an oncogene in human cancer. Adv Enzyme Regul. 50, 190-200 (2010).
9. Director's Challenge Consortium for the Molecular Classification of Lung Adenocarcinoma. Gene expression-Based survival prediction in lung adenocarcinoma: A multi-Site, blinded validation study. Nat Med. 14, 822-827 (2008).
10. Shen, R., Olshen, A. B. & Ladanyi, M. Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics 25, 2906-2912 (2009).
11. Vaske, C. J. et al. Inference of patient-Specific pathway activities from multidimensional cancer genomics data using PARADIGM. Bioinformatics 26, i237-I245 (2010).
12. Barretina, J. et al. The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity. Nature 483, 603-607 (2012).
13. Heiser, L. M. et al. Subtype and pathway specific responses to anticancer compounds in breast cancer. Proc Natl Acad Sci U S A. 109, 2724-2729 (2012).