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Volumn 5, Issue 9, 2010, Pages 1-14

Theoretical formulation of principal components analysis to detect and correct for population Stratification

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DATA ANALYSIS; GENE FREQUENCY; GENETIC ASSOCIATION; GENOME ANALYSIS; POPULATION GENETIC STRUCTURE; PRINCIPAL COMPONENT ANALYSIS; SAMPLE SIZE; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; THEORETICAL STUDY; EVALUATION; HUMAN; METHODOLOGY; POPULATION GENETICS; THEORETICAL MODEL;

EID: 77958601770     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0012510     Document Type: Article
Times cited : (14)

References (21)
  • 1
    • 0018080152 scopus 로고
    • Synthetic maps of human gene frequencies in europeans
    • Menozzi P, Piazza A, Cavalli-Sforza L (1978) Synthetic maps of human gene frequencies in europeans. Science 201: 786-792.
    • (1978) Science , vol.201 , pp. 786-792
    • Menozzi, P.1    Piazza, A.2    Cavalli-Sforza, L.3
  • 3
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin B, Roeder K (1999) Genomic control for association studies. Biometrics 55: 997-1004.
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 4
    • 0035528928 scopus 로고    scopus 로고
    • Case-control studies of association in structured or admixed populations
    • Pritchard J, Donnelly P (2001) Case-control studies of association in structured or admixed populations. Theor Popul Biol 60: 227-237.
    • (2001) Theor Popul Biol , vol.60 , pp. 227-237
    • Pritchard, J.1    Donnelly, P.2
  • 5
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structureusing multilocus genotype data
    • Pritchard J, Stephens M, Donnelly P (2000) Inference of population structureusing multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.1    Stephens, M.2    Donnelly, P.3
  • 6
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard J (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.3
  • 7
    • 33745228973 scopus 로고    scopus 로고
    • Reconstructing geneticancestry blocks in admixed individuals
    • Tang H, Coram M, Wang P, Zhu X, Risch N (2006) Reconstructing geneticancestry blocks in admixed individuals. Am J Hum Genet 79: 1-12.
    • (2006) Am J Hum Genet , vol.79 , pp. 1-12
    • Tang, H.1    Coram, M.2    Wang, P.3    Zhu, X.4    Risch, N.5
  • 8
    • 33846006923 scopus 로고    scopus 로고
    • Population structure and eigenanalysis
    • Patterson N, Price A, Reich D (2006) Population structure and eigenanalysis. PLoS Genet 4: 2074-2093.
    • (2006) PLoS Genet , vol.4 , pp. 2074-2093
    • Patterson, N.1    Price, A.2    Reich, D.3
  • 9
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • Price A, Patterson N, Plenge R, Weinblatt M, Shadick N, et al. (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38: 904-909.
    • (2006) Nat Genet , vol.38 , pp. 904-909
    • Price, A.1    Patterson, N.2    Plenge, R.3    Weinblatt, M.4    Shadick, N.5
  • 10
    • 0036668723 scopus 로고    scopus 로고
    • Association mapping, using a mixture model for complex traits
    • Zhu X, Zhang S, Zhao H, Cooper RS (2002) Association mapping, using a mixture model for complex traits. Genet Epidemiol 23: 184-196.
    • (2002) Genet Epidemiol , vol.23 , pp. 184-196
    • Zhu, X.1    Zhang, S.2    Zhao, H.3    Cooper, R.S.4
  • 11
    • 49749122987 scopus 로고    scopus 로고
    • Population substructure and control selection in genome-wide association studies
    • Yu K, Wang Z, Li Q, Wacholder S, Hunter D, et al. (2008) Population substructure and control selection in genome-wide association studies. PLoS ONE 3: e2551.
    • (2008) PLoS ONE , vol.3
    • Yu, K.1    Wang, Z.2    Li, Q.3    Wacholder, S.4    Hunter, D.5
  • 12
    • 38949104183 scopus 로고    scopus 로고
    • Discerning the ancestry of european americans in genetic association studies
    • Price A, Butler J, Patterson N, Capelli C, Pascali VL, et al. (2008) Discerning the ancestry of european americans in genetic association studies. PLoS Genet 4: 0009-0017.
    • (2008) PLoS Genet , vol.4 , pp. 0009-0017
    • Price, A.1    Butler, J.2    Patterson, N.3    Capelli, C.4    Pascali, V.L.5
  • 13
    • 38949212271 scopus 로고    scopus 로고
    • Analysis and application of european genetic substructure using 300k snp information
    • Tian C, Plenge RM, Ransom M, Lee A, Villoslada P, et al. (2008) Analysis and application of european genetic substructure using 300k snp information. PLoS Genet 4: e4.
    • (2008) PLoS Genet , vol.4
    • Tian, C.1    Plenge, R.M.2    Ransom, M.3    Lee, A.4    Villoslada, P.5
  • 14
    • 56749169214 scopus 로고    scopus 로고
    • Investigation of the fine structure of european populations with applications to disease association studies
    • Heath SC, Gut IG, Brennan P, McKay JD, Bencko V, et al. (2008) Investigation of the fine structure of european populations with applications to disease association studies. Eur J Hum Genet 16: 1413-1429.
    • (2008) Eur J Hum Genet , vol.16 , pp. 1413-1429
    • Heath, S.C.1    Gut, I.G.2    Brennan, P.3    McKay, J.D.4    Bencko, V.5
  • 15
    • 65549126774 scopus 로고    scopus 로고
    • Genetic structure of europeans: A view from the north-east
    • Nelis M, T E, Mägi R, Zimprich F, Zimprich A, et al. (2009) Genetic structure of europeans: A view from the north-east. PLoS One 4: e5472.
    • (2009) PLoS One , vol.4
    • Nelis, M.1    Mägi, T.E.R.2    Zimprich, F.3    Zimprich, A.4
  • 16
    • 53049090475 scopus 로고    scopus 로고
    • Japanese population structure, based on snp genotypes from 7003 individuals compared to other ethnic groups: Effects on population-based association studies
    • Yamaguchi-Kabata Y, Nakazono K, Takahashi A, Saito S, Hosono N, et al. (2008) Japanese population structure, based on snp genotypes from 7003 individuals compared to other ethnic groups: effects on population-based association studies. Am J Hum Genet 83: 445-456.
    • (2008) Am J Hum Genet , vol.83 , pp. 445-456
    • Yamaguchi-Kabata, Y.1    Nakazono, K.2    Takahashi, A.3    Saito, S.4    Hosono, N.5
  • 17
    • 73349108482 scopus 로고    scopus 로고
    • A genealogical interpretation of principal components analysis
    • McVean G (2009) A genealogical interpretation of principal components analysis. PLoS Genet 5: e1000686.
    • (2009) PLoS Genet , vol.5
    • McVean, G.1
  • 20
    • 60849085181 scopus 로고    scopus 로고
    • PCA-based population structure inference with generic clustering algorithms
    • Lee C, Abdool A, Huang C (2009) PCA-based population structure inference with generic clustering algorithms. BMC Bioinformatics 10(suppl 1): S73.
    • (2009) BMC Bioinformatics , vol.10 , Issue.1
    • Lee, C.1    Abdool, A.2    Huang, C.3
  • 21
    • 0029199341 scopus 로고
    • A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identify andpaternity
    • Balding D, Nichols R (1995) A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identify andpaternity. Genetica 96: 3-12.
    • (1995) Genetica , vol.96 , pp. 3-12
    • Balding, D.1    Nichols, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.