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Volumn 29, Issue 4, 2015, Pages 1329-1343

Dynamic changes in the cardiac methylome during postnatal development

Author keywords

Binucleation; Cardiomyocyte proliferation; DNA methylation; Epigenetics; Neonatal heart

Indexed keywords

BETA CATENIN; BONE MORPHOGENETIC PROTEIN; DECITABINE; DNA; FIBROBLAST GROWTH FACTOR; RNA; SONIC HEDGEHOG PROTEIN; TRANSFORMING GROWTH FACTOR BETA; WNT PROTEIN; AZACITIDINE; CELL PENETRATING PEPTIDE;

EID: 84931355632     PISSN: 08926638     EISSN: 15306860     Source Type: Journal    
DOI: 10.1096/fj.14-264093     Document Type: Article
Times cited : (53)

References (41)
  • 1
    • 84911381525 scopus 로고    scopus 로고
    • A neonatal blueprint for cardiac regeneration
    • [Epub ahead of print]
    • Porrello, E. R., and Olson, E. N. (2014) A neonatal blueprint for cardiac regeneration [Epub ahead of print]. Stem Cell Res. (Amst.) 10.1016/j.scr.2014.06.003
    • (2014) Stem Cell Res. (Amst.)
    • Porrello, E.R.1    Olson, E.N.2
  • 4
    • 84863149111 scopus 로고    scopus 로고
    • Epigenetics and cardiovascular development
    • Chang, C. P., and Bruneau, B. G. (2012) Epigenetics and cardiovascular development. Annu. Rev. Physiol. 74, 41-68
    • (2012) Annu. Rev. Physiol. , vol.74 , pp. 41-68
    • Chang, C.P.1    Bruneau, B.G.2
  • 6
    • 80052586181 scopus 로고    scopus 로고
    • Rb and p130 control cell cycle gene silencing to maintain the postmitotic phenotype in cardiac myocytes
    • Sdek, P., Zhao, P., Wang, Y., Huang, C. J., Ko, C. Y., Butler, P. C., Weiss, J. N., and Maclellan, W. R. (2011) Rb and p130 control cell cycle gene silencing to maintain the postmitotic phenotype in cardiac myocytes. J. Cell Biol. 194, 407-423
    • (2011) J. Cell Biol. , vol.194 , pp. 407-423
    • Sdek, P.1    Zhao, P.2    Wang, Y.3    Huang, C.J.4    Ko, C.Y.5    Butler, P.C.6    Weiss, J.N.7    Maclellan, W.R.8
  • 7
    • 84910146191 scopus 로고    scopus 로고
    • Epigenetic modification at Notch responsive promoters blunts efficacy of inducing notch pathway reactivation after myocardial infarction
    • Felician, G., Collesi, C., Lusic, M., Martinelli, V., Ferro, M. D., Zentilin, L., Zacchigna, S., and Giacca, M. (2014) Epigenetic modification at Notch responsive promoters blunts efficacy of inducing notch pathway reactivation after myocardial infarction. Circ. Res. 115, 636-649
    • (2014) Circ. Res. , vol.115 , pp. 636-649
    • Felician, G.1    Collesi, C.2    Lusic, M.3    Martinelli, V.4    Ferro, M.D.5    Zentilin, L.6    Zacchigna, S.7    Giacca, M.8
  • 8
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: Provocative insights from epigenomics
    • Suzuki, M. M., and Bird, A. (2008) DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet. 9, 465-476
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 465-476
    • Suzuki, M.M.1    Bird, A.2
  • 9
    • 84892763878 scopus 로고    scopus 로고
    • Reversing DNA methylation: Mechanisms, genomics, and biological functions
    • Wu, H., and Zhang, Y. (2014) Reversing DNA methylation: mechanisms, genomics, and biological functions. Cell 156, 45-68
    • (2014) Cell , vol.156 , pp. 45-68
    • Wu, H.1    Zhang, Y.2
  • 10
    • 0026708177 scopus 로고
    • Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
    • Li, E., Bestor, T. H., and Jaenisch, R. (1992) Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell 69, 915-926
    • (1992) Cell , vol.69 , pp. 915-926
    • Li, E.1    Bestor, T.H.2    Jaenisch, R.3
  • 14
    • 84894518920 scopus 로고    scopus 로고
    • Inhibition of DNA methylation reverses norepinephrine-induced cardiac hypertrophy in rats
    • Xiao, D., Dasgupta, C., Chen, M., Zhang, K., Buchholz, J., Xu, Z., and Zhang, L. (2013) Inhibition of DNA methylation reverses norepinephrine-induced cardiac hypertrophy in rats. Cardiovasc. Res. 101, 373-382
    • (2013) Cardiovasc. Res. , vol.101 , pp. 373-382
    • Xiao, D.1    Dasgupta, C.2    Chen, M.3    Zhang, K.4    Buchholz, J.5    Xu, Z.6    Zhang, L.7
  • 16
    • 67049115754 scopus 로고    scopus 로고
    • Angiotensin II type 2 receptor antagonizes angiotensin II type 1 receptormediated cardiomyocyte autophagy
    • Porrello, E. R., D'Amore, A., Curl, C. L., Allen, A. M., Harrap, S. B., Thomas, W. G., and Delbridge, L. M. (2009) Angiotensin II type 2 receptor antagonizes angiotensin II type 1 receptormediated cardiomyocyte autophagy. Hypertension 53, 1032-1040
    • (2009) Hypertension , vol.53 , pp. 1032-1040
    • Porrello, E.R.1    D'Amore, A.2    Curl, C.L.3    Allen, A.M.4    Harrap, S.B.5    Thomas, W.G.6    Delbridge, L.M.7
  • 18
    • 84883719710 scopus 로고    scopus 로고
    • Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods
    • Stevens, M., Cheng, J. B., Li, D., Xie, M., Hong, C., Maire, C. L., Ligon, K. L., Hirst, M., Marra, M. A., Costello, J. F., and Wang, T. (2013) Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods. Genome Res. 23, 1541-1553
    • (2013) Genome Res. , vol.23 , pp. 1541-1553
    • Stevens, M.1    Cheng, J.B.2    Li, D.3    Xie, M.4    Hong, C.5    Maire, C.L.6    Ligon, K.L.7    Hirst, M.8    Marra, M.A.9    Costello, J.F.10    Wang, T.11
  • 19
    • 84878535352 scopus 로고    scopus 로고
    • OLego: Fast and sensitive mapping of spliced mRNA-Seq reads using small seeds
    • Wu, J., Anczuków, O., Krainer, A. R., Zhang, M. Q., and Zhang, C. (2013) OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds. Nucleic Acids Res. 41, 5149-5163
    • (2013) Nucleic Acids Res. , vol.41 , pp. 5149-5163
    • Wu, J.1    Anczuków, O.2    Krainer, A.R.3    Zhang, M.Q.4    Zhang, C.5
  • 20
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A. R., and Hall, I. M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 21
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M. D., McCarthy, D. J., and Smyth, G. K. (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 23
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H., and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 26
    • 77951850381 scopus 로고    scopus 로고
    • BISMA - Fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences
    • Rohde, C., Zhang, Y., Reinhardt, R., and Jeltsch, A. (2010) BISMA - fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences. BMC Bioinformatics 11, 230
    • (2010) BMC Bioinformatics , vol.11 , pp. 230
    • Rohde, C.1    Zhang, Y.2    Reinhardt, R.3    Jeltsch, A.4
  • 27
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Stat Soc B Met 57, 289-300
    • (1995) J Roy Stat Soc B Met , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 29
    • 84867145980 scopus 로고    scopus 로고
    • On the presence and role of human gene-body DNA methylation
    • Jjingo, D., Conley, A. B., Yi, S. V., Lunyak, V. V., and Jordan, I. K. (2012) On the presence and role of human gene-body DNA methylation. Oncotarget 3, 462-474
    • (2012) Oncotarget , vol.3 , pp. 462-474
    • Jjingo, D.1    Conley, A.B.2    Yi, S.V.3    Lunyak, V.V.4    Jordan, I.K.5
  • 30
    • 84892909863 scopus 로고    scopus 로고
    • Aging and epigenetic drift: A vicious cycle
    • Issa, J. P. (2014) Aging and epigenetic drift: a vicious cycle. J. Clin. Invest. 124, 24-29
    • (2014) J. Clin. Invest. , vol.124 , pp. 24-29
    • Issa, J.P.1
  • 32
    • 0242610894 scopus 로고    scopus 로고
    • Mechanisms of DNA damage, DNA hypomethylation, and tumor progression in the folate/methyl-deficient rat model of hepatocarcinogenesis
    • James, S. J., Pogribny, I. P., Pogribna, M., Miller, B. J., Jernigan, S., and Melnyk, S. (2003) Mechanisms of DNA damage, DNA hypomethylation, and tumor progression in the folate/methyl-deficient rat model of hepatocarcinogenesis. J. Nutr. 133(11, Suppl 1)3740S-3747S
    • (2003) J. Nutr. , vol.133 , Issue.11 , pp. 3740S-3747S
    • James, S.J.1    Pogribny, I.P.2    Pogribna, M.3    Miller, B.J.4    Jernigan, S.5    Melnyk, S.6
  • 33
    • 0031000977 scopus 로고    scopus 로고
    • Influence of oxygen radical injury on DNA methylation
    • Cerda, S., and Weitzman, S. A. (1997) Influence of oxygen radical injury on DNA methylation. Mutat. Res. 386, 141-152
    • (1997) Mutat. Res. , vol.386 , pp. 141-152
    • Cerda, S.1    Weitzman, S.A.2
  • 34
    • 84859265962 scopus 로고    scopus 로고
    • Active DNA demethylation by Gadd45 and DNA repair
    • Niehrs, C., and Schäfer, A. (2012) Active DNA demethylation by Gadd45 and DNA repair. Trends Cell Biol. 22, 220-227
    • (2012) Trends Cell Biol. , vol.22 , pp. 220-227
    • Niehrs, C.1    Schäfer, A.2
  • 35
    • 84896712746 scopus 로고    scopus 로고
    • Endothelin-1 promotes cardiomyocyte terminal differentiation in the developing heart via heightened DNA methylation
    • Paradis, A., Xiao, D., Zhou, J., and Zhang, L. (2014) Endothelin-1 promotes cardiomyocyte terminal differentiation in the developing heart via heightened DNA methylation. Int. J. Med. Sci. 11, 373-380
    • (2014) Int. J. Med. Sci. , vol.11 , pp. 373-380
    • Paradis, A.1    Xiao, D.2    Zhou, J.3    Zhang, L.4
  • 37
    • 84872081347 scopus 로고    scopus 로고
    • In vivo monitoring of cardiomyocyte proliferation to identify chemical modifiers of heart regeneration
    • Choi, W. Y., Gemberling, M., Wang, J., Holdway, J. E., Shen, M. C., Karlstrom, R. O., and Poss, K. D. (2013) In vivo monitoring of cardiomyocyte proliferation to identify chemical modifiers of heart regeneration. Development 140, 660-666
    • (2013) Development , vol.140 , pp. 660-666
    • Choi, W.Y.1    Gemberling, M.2    Wang, J.3    Holdway, J.E.4    Shen, M.C.5    Karlstrom, R.O.6    Poss, K.D.7
  • 38
    • 2342514242 scopus 로고    scopus 로고
    • TGF-beta-activated Smad3 represses MEF2-dependent transcription in myogenic differentiation
    • Liu, D., Kang, J. S., and Derynck, R. (2004) TGF-beta-activated Smad3 represses MEF2-dependent transcription in myogenic differentiation. EMBO J. 23, 1557-1566
    • (2004) EMBO J. , vol.23 , pp. 1557-1566
    • Liu, D.1    Kang, J.S.2    Derynck, R.3
  • 39
    • 73449113904 scopus 로고    scopus 로고
    • Dnmt3/transcription factor interactions as crucial players in targeted DNA methylation
    • Hervouet, E., Vallette, F. M., and Cartron, P. F. (2009) Dnmt3/transcription factor interactions as crucial players in targeted DNA methylation. Epigenetics 4, 487-499
    • (2009) Epigenetics , vol.4 , pp. 487-499
    • Hervouet, E.1    Vallette, F.M.2    Cartron, P.F.3
  • 40
    • 84861968669 scopus 로고    scopus 로고
    • TGF-β-dependent active demethylation and expression of the p15ink4b tumor suppressor are impaired by the ZNF217/CoREST complex
    • Thillainadesan, G., Chitilian, J. M., Isovic, M., Ablack, J. N., Mymryk, J. S., Tini, M., and Torchia, J. (2012) TGF-β-dependent active demethylation and expression of the p15ink4b tumor suppressor are impaired by the ZNF217/CoREST complex. Mol. Cell 46, 636-649
    • (2012) Mol. Cell , vol.46 , pp. 636-649
    • Thillainadesan, G.1    Chitilian, J.M.2    Isovic, M.3    Ablack, J.N.4    Mymryk, J.S.5    Tini, M.6    Torchia, J.7
  • 41
    • 84891012505 scopus 로고    scopus 로고
    • Switch enhancers interpret TGF-β and Hippo signaling to control cell fate in human embryonic stem cells
    • Beyer, T. A., Weiss, A., Khomchuk, Y., Huang, K., Ogunjimi, A. A., Varelas, X., and Wrana, J. L. (2013) Switch enhancers interpret TGF-β and Hippo signaling to control cell fate in human embryonic stem cells. Cell Reports 5, 1611-1624
    • (2013) Cell Reports , vol.5 , pp. 1611-1624
    • Beyer, T.A.1    Weiss, A.2    Khomchuk, Y.3    Huang, K.4    Ogunjimi, A.A.5    Varelas, X.6    Wrana, J.L.7


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