메뉴 건너뛰기




Volumn 7, Issue 1, 2015, Pages

Metrabase: A cheminformatics and bioinformatics database for small molecule transporter data analysis and (Q)SAR modeling

Author keywords

CYP; Database; Drug transporter; Inducer; Inhibitor; Membrane protein; Metabolism; Metabolite transporter; Substrate; Transport protein

Indexed keywords


EID: 84931335504     PISSN: None     EISSN: 17582946     Source Type: Journal    
DOI: 10.1186/s13321-015-0083-5     Document Type: Article
Times cited : (46)

References (47)
  • 1
    • 17644409999 scopus 로고    scopus 로고
    • Transporter database, TP-search: A web-accessible comprehensive database for research in pharmacokinetics of drugs
    • 1:CAS:528:DC%2BD2cXpvVertrk%3D
    • Ozawa N, Shimizu T, Morita R, Yokono Y, Ochiai T, Munesada K et al (2004) Transporter database, TP-search: A web-accessible comprehensive database for research in pharmacokinetics of drugs. Pharm Res 21(11):2133-2134
    • (2004) Pharm Res , vol.21 , Issue.11 , pp. 2133-2134
    • Ozawa, N.1    Shimizu, T.2    Morita, R.3    Yokono, Y.4    Ochiai, T.5    Munesada, K.6
  • 3
    • 78751650782 scopus 로고    scopus 로고
    • TSdb: A database of transporter substrates linking metabolic pathways and transporter systems on a genome scale via their shared substrates
    • 1:CAS:528:DC%2BC3MXptFektQ%3D%3D
    • Zhao M, Chen Y, Qu D, Qu H (2011) TSdb: a database of transporter substrates linking metabolic pathways and transporter systems on a genome scale via their shared substrates. Sci China Life Sci 54(1):60-64
    • (2011) Sci China Life Sci , vol.54 , Issue.1 , pp. 60-64
    • Zhao, M.1    Chen, Y.2    Qu, D.3    Qu, H.4
  • 4
    • 84895893998 scopus 로고    scopus 로고
    • Human transporter database: Comprehensive knowledge and discovery tools in the human transporter genes
    • Ye AY, Liu QR, Li CY, Zhao M, Qu H (2014) Human transporter database: comprehensive knowledge and discovery tools in the human transporter genes. PLoS One 9(2):e88883
    • (2014) PLoS One , vol.9 , Issue.2 , pp. 88883
    • Ye, A.Y.1    Liu, Q.R.2    Li, C.Y.3    Zhao, M.4    Qu, H.5
  • 5
    • 33947243477 scopus 로고    scopus 로고
    • Human membrane transporter database: A web-accessible relational database for drug transport studies and pharmacogenomics
    • 1:STN:280:DC%2BD3MjgtVOjtg%3D%3D
    • Yan Q, Sadée W (2000) Human membrane transporter database: a web-accessible relational database for drug transport studies and pharmacogenomics. AAPS PharmSci 2(3):E20
    • (2000) AAPS PharmSci , vol.2 , Issue.3 , pp. 20
    • Yan, Q.1    Sadée, W.2
  • 7
    • 84875123211 scopus 로고    scopus 로고
    • The ABCs of membrane transporters in health and disease (SLC series): Introduction
    • 1:CAS:528:DC%2BC3sXksVyktrk%3D
    • Hediger MA, Clemencon B, Burrier RE, Bruford EA (2013) The ABCs of membrane transporters in health and disease (SLC series): introduction. Mol Aspects Med 34(2-3):95-107
    • (2013) Mol Aspects Med , vol.34 , Issue.2-3 , pp. 95-107
    • Hediger, M.A.1    Clemencon, B.2    Burrier, R.E.3    Bruford, E.A.4
  • 8
    • 3042621274 scopus 로고    scopus 로고
    • The progress of membrane protein structure determination
    • 1:CAS:528:DC%2BD2cXlsFWkur0%3D
    • White SH (2004) The progress of membrane protein structure determination. Protein Sci 13(7):1948-1949
    • (2004) Protein Sci , vol.13 , Issue.7 , pp. 1948-1949
    • White, S.H.1
  • 10
  • 11
    • 84891767304 scopus 로고    scopus 로고
    • DrugBank 4.0: Shedding new light on drug metabolism
    • 1:CAS:528:DC%2BC2cXos1Kh
    • Law V, Knox C, Djoumbou Y, Jewison T, Guo AC, Liu Y et al (2014) DrugBank 4.0: shedding new light on drug metabolism. Nucl Acids Res 42(D1):D1091-D1097
    • (2014) Nucl Acids Res , vol.42 , Issue.D1 , pp. 1091-D1097
    • Law, V.1    Knox, C.2    Djoumbou, Y.3    Jewison, T.4    Guo, A.C.5    Liu, Y.6
  • 13
    • 84891760956 scopus 로고    scopus 로고
    • Data, information, knowledge and principle: Back to metabolism in KEGG
    • 1:CAS:528:DC%2BC2cXoslej
    • Kanehisa M, Goto S, Sato Y, Kawashima M, Furumichi M, Tanabe M (2014) Data, information, knowledge and principle: back to metabolism in KEGG. Nucl Acids Res 42(D1):D199-D205
    • (2014) Nucl Acids Res , vol.42 , Issue.D1 , pp. 199-D205
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Kawashima, M.4    Furumichi, M.5    Tanabe, M.6
  • 14
  • 16
    • 84874724662 scopus 로고    scopus 로고
    • Update on activities at the Universal Protein Resource (UniProt) in 2013
    • The UniProt Consortium
    • The UniProt Consortium (2013) Update on activities at the Universal Protein Resource (UniProt) in 2013. Nucl Acids Res 41:D43-D47
    • (2013) Nucl Acids Res , vol.41 , pp. 43-D47
  • 18
  • 19
    • 33846688359 scopus 로고    scopus 로고
    • Structure and function of ABC transporters: The ATP switch provides flexible control
    • 1:CAS:528:DC%2BD2sXhtFWjt7o%3D
    • Linton K, Higgins C (2007) Structure and function of ABC transporters: the ATP switch provides flexible control. Pflug Archiv Eur J Phys 453(5):555-567
    • (2007) Pflug Archiv Eur J Phys , vol.453 , Issue.5 , pp. 555-567
    • Linton, K.1    Higgins, C.2
  • 20
    • 2442680282 scopus 로고    scopus 로고
    • Structures and models of transporter proteins
    • 1:CAS:528:DC%2BD2cXksFCnsLs%3D
    • Dahl SG, Sylte I, Ravna AW (2004) Structures and models of transporter proteins. J Pharmacol Exp Ther 309(3):853-860
    • (2004) J Pharmacol Exp Ther , vol.309 , Issue.3 , pp. 853-860
    • Dahl, S.G.1    Sylte, I.2    Ravna, A.W.3
  • 21
    • 84858133323 scopus 로고    scopus 로고
    • Homology modeling of transporter proteins (Carriers and Ion Channels)
    • Orry AJW, Abagyan R (eds) Humana Press
    • Ravna A, Sylte I (2012) Homology modeling of transporter proteins (Carriers and Ion Channels). In: Orry AJW, Abagyan R (eds) Homology Modeling, vol 857. Humana Press, pp 281-299
    • (2012) Homology Modeling , vol.857 , pp. 281-299
    • Ravna, A.1    Sylte, I.2
  • 23
    • 79953194522 scopus 로고    scopus 로고
    • Chemical name to structure: OPSIN, an open source solution
    • 1:CAS:528:DC%2BC3MXivVCht7o%3D
    • Lowe DM, Corbett PT, Murray-Rust P, Glen RC (2011) Chemical name to structure: OPSIN, an open source solution. J Chem Inf Model 51(3):739-753
    • (2011) J Chem Inf Model , vol.51 , Issue.3 , pp. 739-753
    • Lowe, D.M.1    Corbett, P.T.2    Murray-Rust, P.3    Glen, R.C.4
  • 24
    • 84876473356 scopus 로고    scopus 로고
    • Human intestinal transporter database: QSAR modeling and virtual profiling of drug uptake, efflux and interactions
    • 1:CAS:528:DC%2BC38XhvV2ntLnK
    • Sedykh A, Fourches D, Duan J, Hucke O, Garneau M, Zhu H et al (2013) Human intestinal transporter database: QSAR modeling and virtual profiling of drug uptake, efflux and interactions. Pharm Res 30(4):996-1007
    • (2013) Pharm Res , vol.30 , Issue.4 , pp. 996-1007
    • Sedykh, A.1    Fourches, D.2    Duan, J.3    Hucke, O.4    Garneau, M.5    Zhu, H.6
  • 26
    • 60749083913 scopus 로고    scopus 로고
    • ABC transporters: The power to change
    • 1:CAS:528:DC%2BD1MXitFKlsL0%3D
    • Rees DC, Johnson E, Lewinson O (2009) ABC transporters: the power to change. Nat Rev Mol Cell Biol 10(3):218-227
    • (2009) Nat Rev Mol Cell Biol , vol.10 , Issue.3 , pp. 218-227
    • Rees, D.C.1    Johnson, E.2    Lewinson, O.3
  • 28
    • 84875161979 scopus 로고    scopus 로고
    • Transporter biology in drug approval: Regulatory aspects
    • 1:CAS:528:DC%2BC3sXksVylu7g%3D
    • Maeda K, Sugiyama Y (2013) Transporter biology in drug approval: regulatory aspects. Mol Aspects Med 34(2-3):711-718
    • (2013) Mol Aspects Med , vol.34 , Issue.2-3 , pp. 711-718
    • Maeda, K.1    Sugiyama, Y.2
  • 30
    • 3042786293 scopus 로고    scopus 로고
    • A gene network for navigating the literature
    • 1:CAS:528:DC%2BD2cXlt1Cktbg%3D
    • Hoffmann R, Valencia A (2004) A gene network for navigating the literature. Nat Genet 36:664
    • (2004) Nat Genet , vol.36 , pp. 664
    • Hoffmann, R.1    Valencia, A.2
  • 31
    • 84866259721 scopus 로고    scopus 로고
    • Fingerprint-based in silico models for the prediction of P-glycoprotein substrates and inhibitors
    • 1:CAS:528:DC%2BC38XntFaiurc%3D
    • Poongavanam V, Haider N, Ecker GF (2012) Fingerprint-based in silico models for the prediction of P-glycoprotein substrates and inhibitors. Bioorg Med Chem 20(18):5388-5395
    • (2012) Bioorg Med Chem , vol.20 , Issue.18 , pp. 5388-5395
    • Poongavanam, V.1    Haider, N.2    Ecker, G.F.3
  • 32
    • 85018152032 scopus 로고    scopus 로고
    • The IUPAC International Chemical Identifier (InChI). http://www.iupac.org/inchi, http://www.inchi-trust.org
  • 33
    • 84932196199 scopus 로고    scopus 로고
    • Royal Society of Chemistry
    • ChemSpider, Royal Society of Chemistry. http://www.chemspider.com
  • 34
    • 84932193968 scopus 로고    scopus 로고
    • Chemical Abstracts Service: Columbus, OH
    • SciFinder, Chemical Abstracts Service: Columbus, OH. https://scifinder.cas.org
  • 35
    • 85018156875 scopus 로고    scopus 로고
    • Marvin 6.1.3, ChemAxon. http://www.chemaxon.com
    • Marvin 6.1.3
  • 37
    • 29244477844 scopus 로고    scopus 로고
    • A human protein atlas for normal and cancer tissues based on antibody proteomics
    • 1:CAS:528:DC%2BD2MXhtlWqsb7L
    • Uhlen M, Bjoerling E, Agaton C, Szigyarto CAK, Amini B, Andersen E et al (2005) A human protein atlas for normal and cancer tissues based on antibody proteomics. Mol Cell Proteomics 4(12):1920-1932
    • (2005) Mol Cell Proteomics , vol.4 , Issue.12 , pp. 1920-1932
    • Uhlen, M.1    Bjoerling, E.2    Agaton, C.3    Szigyarto, C.A.K.4    Amini, B.5    Andersen, E.6
  • 39
    • 85018152073 scopus 로고    scopus 로고
    • Mychem 0.9.1. http://mychem.sourceforge.net
    • Mychem 0.9.1
  • 41
    • 58149136373 scopus 로고    scopus 로고
    • Are the chemical structures in your QSAR correct?
    • 1:CAS:528:DC%2BD1MXhtlyqtA%3D%3D
    • Young D, Martin T, Venkatapathy R, Harten P (2008) Are the chemical structures in your QSAR correct? QSAR Comb Sci 27(11-12):1337-1345
    • (2008) QSAR Comb Sci , vol.27 , Issue.11-12 , pp. 1337-1345
    • Young, D.1    Martin, T.2    Venkatapathy, R.3    Harten, P.4
  • 42
    • 78049349961 scopus 로고    scopus 로고
    • Trust, but verify: On the importance of chemical structure curation in cheminformatics and QSAR modeling research
    • 1:CAS:528:DC%2BC3cXnvVeitLk%3D
    • Fourches D, Muratov E, Tropsha A (2010) Trust, but verify: on the importance of chemical structure curation in cheminformatics and QSAR modeling research. J Chem Inf Model 50(7):1189-1204
    • (2010) J Chem Inf Model , vol.50 , Issue.7 , pp. 1189-1204
    • Fourches, D.1    Muratov, E.2    Tropsha, A.3
  • 43
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • 1:CAS:528:DC%2BD3cXjvVygsbs%3D
    • Rice P, Longden I, Bleasby A (2000) EMBOSS: the European molecular biology open software suite. Trends Genet 16(6):276-277
    • (2000) Trends Genet , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 44
    • 33845420011 scopus 로고    scopus 로고
    • Drug interactions with lipid-lowering drugs: Mechanisms and clinical relevance
    • 1:CAS:528:DC%2BD28XhtleisLfE
    • Neuvonen PJ, Niemi M, Backman JT (2006) Drug interactions with lipid-lowering drugs: mechanisms and clinical relevance. Clin Pharmacol Ther 80(6):565-581
    • (2006) Clin Pharmacol Ther , vol.80 , Issue.6 , pp. 565-581
    • Neuvonen, P.J.1    Niemi, M.2    Backman, J.T.3
  • 45
    • 79960771381 scopus 로고    scopus 로고
    • Transporter-mediated drug-drug interactions
    • Mueller F, Fromm MF (2011) Transporter-mediated drug-drug interactions. Pharmacogenomics 12(7):1017-1037
    • (2011) Pharmacogenomics , vol.12 , Issue.7 , pp. 1017-1037
    • Mueller, F.1    Fromm, M.F.2
  • 47
    • 84897020921 scopus 로고    scopus 로고
    • Green tea ingestion greatly reduces plasma concentrations of nadolol in healthy subjects
    • 1:CAS:528:DC%2BC2cXjtVGhtrg%3D
    • Misaka S, Yatabe J, Mueller F, Takano K, Kawabe K, Glaeser H et al (2014) Green tea ingestion greatly reduces plasma concentrations of nadolol in healthy subjects. Clin Pharmacol Ther 95(4):432-438
    • (2014) Clin Pharmacol Ther , vol.95 , Issue.4 , pp. 432-438
    • Misaka, S.1    Yatabe, J.2    Mueller, F.3    Takano, K.4    Kawabe, K.5    Glaeser, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.