-
1
-
-
80051672378
-
Animal behaviour meets microbial ecology
-
Archie, E. A., and Theis, K. R. (2011). Animal behaviour meets microbial ecology. Anim. Behav. 82, 425-436. doi: 10.1016/j.anbehav.2011.05.029.
-
(2011)
Anim. Behav
, vol.82
, pp. 425-436
-
-
Archie, E.A.1
Theis, K.R.2
-
2
-
-
79551639662
-
Fermentation potential of the gut microbiome: implications for energy homeostasis and weight management
-
Arora, T., and Sharma, R. (2011). Fermentation potential of the gut microbiome: implications for energy homeostasis and weight management. Nutr. Rev. 69, 99-106. doi: 10.1111/j.1753-4887.2010.00365.x.
-
(2011)
Nutr. Rev
, vol.69
, pp. 99-106
-
-
Arora, T.1
Sharma, R.2
-
3
-
-
8144226856
-
The gut microbiota as an environmental factor that regulates fat storage
-
Bäckhed, F., Ding, H., Wang, T., Hooper, L. V., Koh, G. Y., Nagy, A., et al. (2004). The gut microbiota as an environmental factor that regulates fat storage. Proc. Natl. Acad. Sci. U.S.A. 101, 15718-15723. doi: 10.1073/pnas.0407076101.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, pp. 15718-15723
-
-
Bäckhed, F.1
Ding, H.2
Wang, T.3
Hooper, L.V.4
Koh, G.Y.5
Nagy, A.6
-
4
-
-
0032322743
-
Sugar composition of nectars and fruits consumed by birds and bats in the tropics and subtropics
-
Baker, H. G., Baker, I., and Hodges, S. (1998). Sugar composition of nectars and fruits consumed by birds and bats in the tropics and subtropics. Biotropica 30, 559-586. doi: 10.1111/j.1744-7429.1998.tb00097.x.
-
(1998)
Biotropica
, vol.30
, pp. 559-586
-
-
Baker, H.G.1
Baker, I.2
Hodges, S.3
-
5
-
-
84871979584
-
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
-
Bokulich, N. A., Subramanian, S., Faith, J. J., Gevers, D., Gordon, J. I., Knight, R., et al. (2013). Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat. Methods 10, 57-59. doi: 10.1038/nmeth.2276.
-
(2013)
Nat. Methods
, vol.10
, pp. 57-59
-
-
Bokulich, N.A.1
Subramanian, S.2
Faith, J.J.3
Gevers, D.4
Gordon, J.I.5
Knight, R.6
-
6
-
-
84878201439
-
Experimental coevolution of species interactions
-
Brockhurst, M. A., and Koskella, B. (2013). Experimental coevolution of species interactions. Trends Ecol. Evol. 6, 367-375. doi: 10.1016/j.tree.2013.02.009.
-
(2013)
Trends Ecol. Evol
, vol.6
, pp. 367-375
-
-
Brockhurst, M.A.1
Koskella, B.2
-
7
-
-
0035213955
-
The species-area relationship in bat assemblages of tropical caves
-
Brunet, A. K., and Medellín, R. A. (2001). The species-area relationship in bat assemblages of tropical caves. J. Mammal. 82, 1114-1122. doi: 10.1644/1545-1542(2001)082<1114:TSARIB>2.0.CO;2.
-
(2001)
J. Mammal
, vol.82
, pp. 1114-1122
-
-
Brunet, A.K.1
Medellín, R.A.2
-
8
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., et al. (2010). QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336. doi: 10.1038/nmeth.f.303.
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
9
-
-
84863981120
-
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
-
Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg-Lyons, D., Huntley, J., Fierer, N., et al. (2012). Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6, 1621-1624. doi: 10.1038/ismej.2012.8.
-
(2012)
ISME J
, vol.6
, pp. 1621-1624
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Huntley, J.5
Fierer, N.6
-
11
-
-
28744439288
-
'Mass-balance models for animal isotopic ecology. Physiological and ecological adaptations to feeding in vertebrates'
-
eds J. M. Starck and T. Wang (Enfield, NH: Science Publishers)
-
Del Rio, C. M., and Wolf, B. O. (2005). "Mass-balance models for animal isotopic ecology. Physiological and ecological adaptations to feeding in vertebrates," in Physiological and Ecological Adaptations to Feeding in Vertebrates, eds J. M. Starck and T. Wang (Enfield, NH: Science Publishers), 141-174.
-
(2005)
Physiological and Ecological Adaptations to Feeding in Vertebrates
, pp. 141-174
-
-
Del Rio, C.M.1
Wolf, B.O.2
-
12
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797. doi: 10.1093/nar/gkh340.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
13
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. (2013). Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461. doi: 10.1093/bioinformatics/btq461.
-
(2013)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
14
-
-
0027020264
-
Wounds and the origin of blood-feeding in bats
-
Fenton, M. B. (1992). Wounds and the origin of blood-feeding in bats. Biol. J. Linn. Soc. 47, 161-171. doi: 10.1111/j.1095-8312.1992.tb00662.x.
-
(1992)
Biol. J. Linn. Soc
, vol.47
, pp. 161-171
-
-
Fenton, M.B.1
-
15
-
-
0003828268
-
-
A Study in Plant-animal Interactions. Wildlife Behavior and Ecology Series. Chicago, IL: The University of Chicago Press
-
Fleming, T. H. (1988). The Short-tailed Fruit Bat. A Study in Plant-animal Interactions. Wildlife Behavior and Ecology Series. Chicago, IL: The University of Chicago Press.
-
(1988)
The Short-tailed Fruit Bat
-
-
Fleming, T.H.1
-
16
-
-
0001112281
-
'Feeding habits'
-
eds R. J. Baker, J. Jones, J. Knox, and D. C. Carter (Lubbock, TX: Special Publications The Museum Texas Tech University)
-
Gardner, A. L. (1979). "Feeding habits," in Biology of Bats of the New World Family Phyllostomatidae. Part II, eds R. J. Baker, J. Jones, J. Knox, and D. C. Carter (Lubbock, TX: Special Publications The Museum Texas Tech University), 293-350.
-
(1979)
Biology of Bats of the New World Family Phyllostomatidae. Part II
, pp. 293-350
-
-
Gardner, A.L.1
-
17
-
-
0022835026
-
The role of nitrogen from fruit pulp in the nutrition of the frugivorous bat Carollia perspicillata
-
Herbst, L. H., and Gables, C. (2013). The role of nitrogen from fruit pulp in the nutrition of the frugivorous bat Carollia perspicillata. Biotropica 18, 39-44. doi: 10.2307/2388360.
-
(2013)
Biotropica
, vol.18
, pp. 39-44
-
-
Herbst, L.H.1
Gables, C.2
-
18
-
-
84877132056
-
Asymetric contribution of isotopically contrasting food sources to vertebrate consumers in a subtropical semi-arid ecosystem
-
Herrera-Montalvo, L. G., Rodríguez-Galindo, M., and Ibarra-López, M. P. (2013). Asymetric contribution of isotopically contrasting food sources to vertebrate consumers in a subtropical semi-arid ecosystem. Biotropica 45, 357-364. doi: 10.1111/btp.12018.
-
(2013)
Biotropica
, vol.45
, pp. 357-364
-
-
Herrera-Montalvo, L.G.1
Rodríguez-Galindo, M.2
Ibarra-López, M.P.3
-
19
-
-
0022236483
-
Nutritional values of wild fruits and consumption by migrant frugivorous birds
-
Johnson, R. A., Wilson, M. F., Thompson, J. N., and Bertin, R. I. (1985). Nutritional values of wild fruits and consumption by migrant frugivorous birds. Ecology 66, 819-827. doi: 10.2307/1940543.
-
(1985)
Ecology
, vol.66
, pp. 819-827
-
-
Johnson, R.A.1
Wilson, M.F.2
Thompson, J.N.3
Bertin, R.I.4
-
20
-
-
79951803974
-
Ecological physiology of diet and digestive systems
-
Karasov, W. H., Martínez del Rio, C., and Caviedes-Vidal, E. (2011). Ecological physiology of diet and digestive systems. Ann. Rev. Physiol. 73, 69-93. doi: 10.1146/annurev-physiol-012110-142152.
-
(2011)
Ann. Rev. Physiol
, vol.73
, pp. 69-93
-
-
Karasov, W.H.1
Martínez del Rio, C.2
Caviedes-Vidal, E.3
-
21
-
-
0012615554
-
Intestinal bacterial flora and transit time of three neotropical bat species
-
Klite, P. D. (1965). Intestinal bacterial flora and transit time of three neotropical bat species. J. Bacteriol. 90, 375-379.
-
(1965)
J. Bacteriol
, vol.90
, pp. 375-379
-
-
Klite, P.D.1
-
22
-
-
84905198664
-
Planctomycetes and macroalgae, a striking association
-
Lage, O. M., and Bondoso, J. (2014). Planctomycetes and macroalgae, a striking association. Front. Microbiol. 5:267. doi: 10.3389/fmicb.2014.00267.
-
(2014)
Front. Microbiol
, vol.5
, pp. 267
-
-
Lage, O.M.1
Bondoso, J.2
-
23
-
-
78650647326
-
Has the microbiota played a critical role in the evolution of the adaptive immune system?
-
Lee, Y. K., and Mazmanian, S. K. (2010). Has the microbiota played a critical role in the evolution of the adaptive immune system? Science 24, 1768-1773. doi: 10.1126/science.1195568.
-
(2010)
Science
, vol.24
, pp. 1768-1773
-
-
Lee, Y.K.1
Mazmanian, S.K.2
-
24
-
-
52049092682
-
Worlds within worlds: evolution of the vertebrate gut microbiota
-
Ley, R. E., Lozupone, C. A., Hamady, M., Knight, R., and Gordon, J. G. (2008). Worlds within worlds: evolution of the vertebrate gut microbiota. Nat. Rev. Microbiol. 6, 776-788. doi: 10.1038/nrmicro1978.
-
(2008)
Nat. Rev. Microbiol
, vol.6
, pp. 776-788
-
-
Ley, R.E.1
Lozupone, C.A.2
Hamady, M.3
Knight, R.4
Gordon, J.G.5
-
25
-
-
84878175495
-
Gut microbota and kin recognition
-
Lizé, A., McKay, R., and Lewis, Z. (2013). Gut microbota and kin recognition. Trends Ecol. Evol. 28, 325-326. doi: 10.1016/j.tree.2012.10.013.
-
(2013)
Trends Ecol. Evol
, vol.28
, pp. 325-326
-
-
Lizé, A.1
McKay, R.2
Lewis, Z.3
-
26
-
-
80052719847
-
The ecological causes of evolution
-
MacColl, A. D. C. (2011). The ecological causes of evolution. Trends Ecol. Evol. 26, 514-522. doi: 10.1016/j.tree.2011.06.009.
-
(2011)
Trends Ecol. Evol
, vol.26
, pp. 514-522
-
-
MacColl, A.D.C.1
-
27
-
-
80054913451
-
FLASH: fast length adjustment of short reads to improve genome assemblies
-
Magoč, T., and Salzberg, L. S. (2011). FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27, 2957-2963. doi: 10.1093/bioinformatics/btr507.
-
(2011)
Bioinformatics
, vol.27
, pp. 2957-2963
-
-
Magoč, T.1
Salzberg, L.S.2
-
28
-
-
79956301905
-
Diet convergence in gut microbiome functions across mamammalian phylogeny and within humans
-
Muegge, B. D., Kuczynski, J., Knights, D., Clemente, J. C., González, A., Fontana, L., et al. (2011). Diet convergence in gut microbiome functions across mamammalian phylogeny and within humans. Science 332, 970-974. doi: 10.1126/science.1198719.
-
(2011)
Science
, vol.332
, pp. 970-974
-
-
Muegge, B.D.1
Kuczynski, J.2
Knights, D.3
Clemente, J.C.4
González, A.5
Fontana, L.6
-
29
-
-
17844404232
-
Gut microorganisms, mammalian metabolism and personalized health care
-
Nicholson, J. K., Holmes, E., and Wilson, I. D. (2005). Gut microorganisms, mammalian metabolism and personalized health care. Nat. Rev. Microbiol. 3, 431-438. doi: 10.1038/nrmicro1152.
-
(2005)
Nat. Rev. Microbiol
, vol.3
, pp. 431-438
-
-
Nicholson, J.K.1
Holmes, E.2
Wilson, I.D.3
-
30
-
-
19944413965
-
Nucleic acid isolation from ecological samples-vertebrate gut flora
-
Nordgård, L., Traavik, T., and Nielsen, K. M. (2005). Nucleic acid isolation from ecological samples-vertebrate gut flora. Meth. Enzymol. 395, 38-48. doi: 10.1016/S0076-6879(05)95003-9.
-
(2005)
Meth. Enzymol
, vol.395
, pp. 38-48
-
-
Nordgård, L.1
Traavik, T.2
Nielsen, K.M.3
-
31
-
-
78649978358
-
Evolutionary relationships of wild hominids recapitulated by gut microbial communities
-
Ochman, H., Worobey, M., Kuo, C.-H., Ndjango, J.-B. N., Peeters, M., Hahn, B. H., et al. (2010). Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol. 8:e1000546. doi: 10.1371/journal.pbio.1000546.
-
(2010)
PLoS Biol
, vol.8
-
-
Ochman, H.1
Worobey, M.2
Kuo, C.-H.3
Ndjango, J.-B.N.4
Peeters, M.5
Hahn, B.H.6
-
32
-
-
70349255569
-
-
Version 1.15-1
-
Oksanen, J., Kindt, R., Legendre, P., O'Hara, B., Stevens, M. H. H., Oksanen, M. J., et al. (2007). Community Ecology Package. Version 1.15-1. Available online at: http://cran.r-project.org/,http://vegan.r-forge.r-project.org/.
-
(2007)
Community Ecology Package
-
-
Oksanen, J.1
Kindt, R.2
Legendre, P.3
O'Hara, B.4
Stevens, M.H.H.5
Oksanen, M.J.6
-
33
-
-
77953619002
-
The ecological coherence of high bacterial taxonomic rank
-
Philippot, L., Andersson, S. G. E., Battin, T. J., Prosser, J. I., Schimel, J. P., Whitman, W. B., et al. (2010). The ecological coherence of high bacterial taxonomic rank. Nat. Rev. Microbiol. 8, 523-529. doi: 10.1038/nrmicro2367.
-
(2010)
Nat. Rev. Microbiol
, vol.8
, pp. 523-529
-
-
Philippot, L.1
Andersson, S.G.E.2
Battin, T.J.3
Prosser, J.I.4
Schimel, J.P.5
Whitman, W.B.6
-
34
-
-
84861574806
-
Microbiome analysis among bats describes influences of host phylogeny, life history, physiology and geography
-
Phillips, C. D., Phelan, G., Dowd, S. E., McDonough, M. M., Ferguson, A. W., Delton, H. J., et al. (2012). Microbiome analysis among bats describes influences of host phylogeny, life history, physiology and geography. Mol. Ecol. 21, 2617-2627. doi: 10.1111/j.1365-294X.2012.05568.x.
-
(2012)
Mol. Ecol
, vol.21
, pp. 2617-2627
-
-
Phillips, C.D.1
Phelan, G.2
Dowd, S.E.3
McDonough, M.M.4
Ferguson, A.W.5
Delton, H.J.6
-
35
-
-
77949718257
-
FstTree 2-approximately maximum-likelihood trees for large alignments
-
Price, M. N., Dehal, P. S., and Arkin, A. P. (2010). FstTree 2-approximately maximum-likelihood trees for large alignments. PLoS ONE 5:e9490. doi: 10.1371/journal.pone.0009490.
-
(2010)
PLoS ONE
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
36
-
-
0024202813
-
Isolation and purification of cyanobacteria
-
Rippka, R. (1988). Isolation and purification of cyanobacteria. Meth. Enzymol. 167, 3-27. doi: 10.1016/0076-6879(88)67004-2.
-
(1988)
Meth. Enzymol
, vol.167
, pp. 3-27
-
-
Rippka, R.1
-
37
-
-
80052970180
-
Evidence of a core gut microbiota in the zebrafish
-
Roeselers, G., Mittge, E. K., Stephens, W. Z., Parichy, D. M., Cavanaugh, C. M., Guillemin, K., et al. (2011). Evidence of a core gut microbiota in the zebrafish. ISME J. 10, 1595-1608. doi: 10.1038/ismej.2011.38.
-
(2011)
ISME J
, vol.10
, pp. 1595-1608
-
-
Roeselers, G.1
Mittge, E.K.2
Stephens, W.Z.3
Parichy, D.M.4
Cavanaugh, C.M.5
Guillemin, K.6
-
38
-
-
79955575050
-
When did plants become important to leaf-nosed bats? Diversification of feeding habits in the family Phyllostomidae
-
Rojas, D., Vale, A., Ferrero, V., and Navarro, L. (2011). When did plants become important to leaf-nosed bats? Diversification of feeding habits in the family Phyllostomidae. Mol. Ecol. 20, 2217-2228. doi: 10.1111/j.1365-294X.2011.05082.x.
-
(2011)
Mol. Ecol
, vol.20
, pp. 2217-2228
-
-
Rojas, D.1
Vale, A.2
Ferrero, V.3
Navarro, L.4
-
39
-
-
84896388229
-
Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes
-
Sanders, J. G., Powell, S., Kronauer, D. J. C., Vasconcelos, H. L., Frederickson, M. E., and Pierce, N. E. (2014). Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes. Mol. Ecol. 23, 1268-1283. doi: 10.1111/mec.12611.
-
(2014)
Mol. Ecol
, vol.23
, pp. 1268-1283
-
-
Sanders, J.G.1
Powell, S.2
Kronauer, D.J.C.3
Vasconcelos, H.L.4
Frederickson, M.E.5
Pierce, N.E.6
-
40
-
-
0017341656
-
Microbial ecology of the gastrointestinal tract
-
Savage, D. C. (1977). Microbial ecology of the gastrointestinal tract. Annu. Rev. Microbiol. 31, 107-133. doi: 10.1146/annurev.mi.31.100177.000543.
-
(1977)
Annu. Rev. Microbiol
, vol.31
, pp. 107-133
-
-
Savage, D.C.1
-
41
-
-
23044527999
-
Diet and the evolution of digestion and renal function on phyllostomid bats
-
Schondube, J. E., Herrera-M, L. G., and Martínez del Río, C. (2001). Diet and the evolution of digestion and renal function on phyllostomid bats. Zoology 104, 59-73. doi: 10.1078/0944-2006-00007.
-
(2001)
Zoology
, vol.104
, pp. 59-73
-
-
Schondube, J.E.1
Herrera-M, L.G.2
Martínez del Río, C.3
-
42
-
-
79951899359
-
The Animal Care and Use Committee of the American Society of Mammologists. Guidelines of the American Society of Mammalogists for the use of wild mammals in research
-
Sikes, R. S., and Gannon, W. L. (2011). The Animal Care and Use Committee of the American Society of Mammologists. Guidelines of the American Society of Mammalogists for the use of wild mammals in research. J. Mammal. 92, 235-253. doi: 10.1644/10-MAMM-F-355.1.
-
(2011)
J. Mammal
, vol.92
, pp. 235-253
-
-
Sikes, R.S.1
Gannon, W.L.2
-
43
-
-
69949111703
-
The core gut microbiome, energy balance and obesity
-
Turnbaugh, P. J., and Gordon, J. I. (2009). The core gut microbiome, energy balance and obesity. J. Physiol. 587, 4153-4158. doi: 10.1113/jphysiol.2009.174136.
-
(2009)
J. Physiol
, vol.587
, pp. 4153-4158
-
-
Turnbaugh, P.J.1
Gordon, J.I.2
-
44
-
-
79958056338
-
The host selects mucosal and luminal associations of coevolved but microorganisms: a novel concept
-
Van den Abbeele, P., Van de Wiele, T., Verstraete, V., and Possemiers, S. (2011). The host selects mucosal and luminal associations of coevolved but microorganisms: a novel concept. FEMS Microbiol. Rev. 35, 681-704. doi: 10.1111/j.1574-6976.2011.00270.x.
-
(2011)
FEMS Microbiol. Rev
, vol.35
, pp. 681-704
-
-
Van den Abbeele, P.1
Van de Wiele, T.2
Verstraete, V.3
Possemiers, S.4
-
45
-
-
76249115388
-
The diversity field of New World leaf-nosed bats (Phyllostomidae)
-
Villalobos, F., and Arita, H. T. (2010). The diversity field of New World leaf-nosed bats (Phyllostomidae). Glob. Ecol. Biogeogr. 19, 200-211. doi: 10.1111/j.1466-8238.2009.00503.x.
-
(2010)
Glob. Ecol. Biogeogr
, vol.19
, pp. 200-211
-
-
Villalobos, F.1
Arita, H.T.2
-
46
-
-
34548293679
-
Naïve Bayesian classifier for rapid assignment of rRNA sequences into the New Bacterial Taxonomy
-
Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R. (2007). Naïve Bayesian classifier for rapid assignment of rRNA sequences into the New Bacterial Taxonomy. Appl. Environ. Microb. 73, 5261-5267. doi: 10.1128/AEM.00062-07.
-
(2007)
Appl. Environ. Microb
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
|