-
1
-
-
38549103015
-
Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits
-
Stinchcombe JR, Hoekstra HE. Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits. Heredity. 2008;100(2):158-70.
-
(2008)
Heredity
, vol.100
, Issue.2
, pp. 158-170
-
-
Stinchcombe, J.R.1
Hoekstra, H.E.2
-
2
-
-
79959435199
-
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
-
Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, Blaxter ML. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat Rev Genet. 2011;12(7):499-510.
-
(2011)
Nat Rev Genet
, vol.12
, Issue.7
, pp. 499-510
-
-
Davey, J.W.1
Hohenlohe, P.A.2
Etter, P.D.3
Boone, J.Q.4
Catchen, J.M.5
Blaxter, M.L.6
-
3
-
-
79953325544
-
Efficient and Cost Effective Population Resequencing by Pooling and In-Solution Hybridization
-
Bansal V, Tewhey R, LeProust EM, Schork NJ. Efficient and Cost Effective Population Resequencing by Pooling and In-Solution Hybridization. Plos One. 2011. 6(3).
-
(2011)
Plos One
, vol.6
, Issue.3
-
-
Bansal, V.1
Tewhey, R.2
LeProust, E.M.3
Schork, N.J.4
-
4
-
-
84880173092
-
Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping
-
Gautier M, Foucaud J, Gharbi K, Cezard T, Galan M, Loiseau A, Thomson M, Pudlo P, Kerdelhue C, Estoup A: Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping. Mol Ecol. 2013;22(14):3766-79.
-
(2013)
Mol Ecol
, vol.22
, Issue.14
, pp. 3766-3779
-
-
Gautier, M.1
Foucaud, J.2
Gharbi, K.3
Cezard, T.4
Galan, M.5
Loiseau, A.6
Thomson, M.7
Pudlo, P.8
Kerdelhue, C.9
Estoup, A.10
-
5
-
-
34548826761
-
Single nucleotide polymorphism (SNP) allele frequency estimation in DNA pools using Pyrosequencing (TM)
-
Lavebratt C, Sengul S. Single nucleotide polymorphism (SNP) allele frequency estimation in DNA pools using Pyrosequencing (TM). Nat Protoc. 2006;1(6):2573-82.
-
(2006)
Nat Protoc
, vol.1
, Issue.6
, pp. 2573-2582
-
-
Lavebratt, C.1
Sengul, S.2
-
6
-
-
49949097516
-
High Throughput Automated Allele Frequency Estimation by Pyrosequencing
-
Doostzadeh J, Shokralla S, Absalan F, Jalili R, Mohandessi S, Langston JW, Davis RW, Ronaghi M, Gharizadeh B. High Throughput Automated Allele Frequency Estimation by Pyrosequencing. Plos One. 2008. 3(7).
-
(2008)
Plos One
, vol.3
, Issue.7
-
-
Doostzadeh, J.1
Shokralla, S.2
Absalan, F.3
Jalili, R.4
Mohandessi, S.5
Langston, J.W.6
Davis, R.W.7
Ronaghi, M.8
Gharizadeh, B.9
-
7
-
-
0036590151
-
Universal, robust, highly quantitative SNP allele frequency measurement in DNA pools
-
Norton N, Williams NM, Williams HJ, Spurlock G, Kirov G, Morris DW, Hoogendoorn B, Owen MJ, O'Donovan MC: Universal, robust, highly quantitative SNP allele frequency measurement in DNA pools. Hum Genet. 2002;110(5):471-8.
-
(2002)
Hum Genet
, vol.110
, Issue.5
, pp. 471-478
-
-
Norton, N.1
Williams, N.M.2
Williams, H.J.3
Spurlock, G.4
Kirov, G.5
Morris, D.W.6
Hoogendoorn, B.7
Owen, M.J.8
O'Donovan, M.C.9
-
8
-
-
0036301060
-
Large-scale determination of SNP allele frequencies in DNA pools using MALDI-TOF mass spectrometry
-
Werner M, Sych M, Herbon N, Illig T, Konig IR, Wjst M. Large-scale determination of SNP allele frequencies in DNA pools using MALDI-TOF mass spectrometry. Hum Mutat. 2002;20(1):57-64.
-
(2002)
Hum Mutat
, vol.20
, Issue.1
, pp. 57-64
-
-
Werner, M.1
Sych, M.2
Herbon, N.3
Illig, T.4
Konig, I.R.5
Wjst, M.6
-
9
-
-
0025861818
-
Detection of specific polymerase chain-reaction product by utilizing the 5'- 3' exonuclease activity of thermus-aquaticus DNA-polymerase
-
Holland PM, Abramson RD, Watson R, Gelfand DH. Detection of specific polymerase chain-reaction product by utilizing the 5'- 3' exonuclease activity of thermus-aquaticus DNA-polymerase. Proc Natl Acad Sci U S A. 1991;88(16):7276-80.
-
(1991)
Proc Natl Acad Sci U S A
, vol.88
, Issue.16
, pp. 7276-7280
-
-
Holland, P.M.1
Abramson, R.D.2
Watson, R.3
Gelfand, D.H.4
-
10
-
-
0034090681
-
High-throughput SNP allele-frequency determination in pooled DNA samples by kinetic PCR
-
Germer S, Holland MJ, Higuchi R. High-throughput SNP allele-frequency determination in pooled DNA samples by kinetic PCR. Genome Res. 2000;10(2):258-66.
-
(2000)
Genome Res
, vol.10
, Issue.2
, pp. 258-266
-
-
Germer, S.1
Holland, M.J.2
Higuchi, R.3
-
11
-
-
79958084112
-
Population genetic analysis of plasmodium falciparum parasites using a customized illumina goldengate genotyping assay
-
Campino S, Auburn S, Kivinen K, Zongo I, Ouedraogo JB, Mangano V, Djimde A, Doumbo OK, Kiara SM, Nzila A, et al. Population genetic analysis of plasmodium falciparum parasites using a customized illumina goldengate genotyping assay. Plos One. 2011. 6(6).
-
(2011)
Plos One
, vol.6
, Issue.6
-
-
Campino, S.1
Auburn, S.2
Kivinen, K.3
Zongo, I.4
Ouedraogo, J.B.5
Mangano, V.6
Djimde, A.7
Doumbo, O.K.8
Kiara, S.M.9
Nzila, A.10
-
12
-
-
4444270196
-
Genotyping pooled DNA on microarrays: a systematic genome screen of thousands of SNPs in large samples to detect QTLs for complex traits
-
Butcher LM, Meaburn E, Liu L, Fernandes C, Hill L, Al-Chalabi A, Plomin R, Schalkwyk L, Craig IW: Genotyping pooled DNA on microarrays: a systematic genome screen of thousands of SNPs in large samples to detect QTLs for complex traits. Behav Genet. 2004;34(5):549-55.
-
(2004)
Behav Genet
, vol.34
, Issue.5
, pp. 549-555
-
-
Butcher, L.M.1
Meaburn, E.2
Liu, L.3
Fernandes, C.4
Hill, L.5
Al-Chalabi, A.6
Plomin, R.7
Schalkwyk, L.8
Craig, I.W.9
-
13
-
-
0036844881
-
DNA pooling: a tool for large-scale association studies
-
Sham P, Bader JS, Craig I, O'Donovan M, Owen M. DNA pooling: a tool for large-scale association studies. Nat Rev Genet. 2002;3(11):862-71.
-
(2002)
Nat Rev Genet
, vol.3
, Issue.11
, pp. 862-871
-
-
Sham, P.1
Bader, J.S.2
Craig, I.3
O'Donovan, M.4
Owen, M.5
-
14
-
-
78650059479
-
Application of single nucleotide polymorphisms to non-model species: a technical review
-
Garvin MR, Saitoh K, Gharrett AJ. Application of single nucleotide polymorphisms to non-model species: a technical review. Mol Ecol Resour. 2010;10(6):915-34.
-
(2010)
Mol Ecol Resour
, vol.10
, Issue.6
, pp. 915-934
-
-
Garvin, M.R.1
Saitoh, K.2
Gharrett, A.J.3
-
15
-
-
84867309410
-
High-resolution melting: applications in genetic disorders
-
Er TK, Chang JG. High-resolution melting: applications in genetic disorders. Clin Chim Acta. 2012;414:197-201.
-
(2012)
Clin Chim Acta
, vol.414
, pp. 197-201
-
-
Er, T.K.1
Chang, J.G.2
-
16
-
-
26844517352
-
Quantitative heteroduplex analysis for single nucleotide polymorphism genotyping
-
Palais RA, Liew MA, Wittwer CT. Quantitative heteroduplex analysis for single nucleotide polymorphism genotyping. Anal Biochem. 2005;346(1):167-75.
-
(2005)
Anal Biochem
, vol.346
, Issue.1
, pp. 167-175
-
-
Palais, R.A.1
Liew, M.A.2
Wittwer, C.T.3
-
17
-
-
78650282239
-
Quantitative high-resolution melting analysis for detecting adulterations
-
Mader E, Ruzicka J, Schmiderer C, Novak J. Quantitative high-resolution melting analysis for detecting adulterations. Anal Biochem. 2011;409(1):153-5.
-
(2011)
Anal Biochem
, vol.409
, Issue.1
, pp. 153-155
-
-
Mader, E.1
Ruzicka, J.2
Schmiderer, C.3
Novak, J.4
-
18
-
-
84869186110
-
High resolution melting analysis for quantitative detection of bovine milk in pure water buffalo mozzarella and other buffalo dairy products
-
Sakaridis I, Ganopoulos I, Argiriou A, Tsaftaris A. High resolution melting analysis for quantitative detection of bovine milk in pure water buffalo mozzarella and other buffalo dairy products. Int Dairy J. 2013;28(1):32-5.
-
(2013)
Int Dairy J
, vol.28
, Issue.1
, pp. 32-35
-
-
Sakaridis, I.1
Ganopoulos, I.2
Argiriou, A.3
Tsaftaris, A.4
-
19
-
-
84873549271
-
A fast and accurate method for controlling the correct labeling of products containing buffalo meat using High Resolution Melting (HRM) analysis
-
Sakaridis I, Ganopoulos I, Argiriou A, Tsaftaris A. A fast and accurate method for controlling the correct labeling of products containing buffalo meat using High Resolution Melting (HRM) analysis. Meat Sci. 2013;94(1):84-8.
-
(2013)
Meat Sci
, vol.94
, Issue.1
, pp. 84-88
-
-
Sakaridis, I.1
Ganopoulos, I.2
Argiriou, A.3
Tsaftaris, A.4
-
20
-
-
84878229795
-
A novel closed-tube method based on high resolution melting (HRM) analysis for authenticity testing and quantitative detection in Greek PDO Feta cheese
-
Ganopoulos I, Sakaridis I, Argiriou A, Madesis P, Tsaftaris A. A novel closed-tube method based on high resolution melting (HRM) analysis for authenticity testing and quantitative detection in Greek PDO Feta cheese. Food Chem. 2013;141(2):835-40.
-
(2013)
Food Chem
, vol.141
, Issue.2
, pp. 835-840
-
-
Ganopoulos, I.1
Sakaridis, I.2
Argiriou, A.3
Madesis, P.4
Tsaftaris, A.5
-
21
-
-
64249094339
-
High quality assessment of DNA methylation in archival tissues from colorectal cancer patients using quantitative high-resolution melting analysis
-
Balic M, Pichler M, Strutz J, Heitzer E, Ausch C, Samonigg H, Cote RJ, Dandachi N: High quality assessment of DNA methylation in archival tissues from colorectal cancer patients using quantitative high-resolution melting analysis. J Mol Diagn. 2009;11(2):102-8.
-
(2009)
J Mol Diagn
, vol.11
, Issue.2
, pp. 102-108
-
-
Balic, M.1
Pichler, M.2
Strutz, J.3
Heitzer, E.4
Ausch, C.5
Samonigg, H.6
Cote, R.J.7
Dandachi, N.8
-
22
-
-
67651174523
-
Quantitative evaluation of DNA methylation by optimization of a differential-high resolution melt analysis protocol
-
Malentacchi F, Forni G, Vinci S, Orlando C. Quantitative evaluation of DNA methylation by optimization of a differential-high resolution melt analysis protocol. Nucleic Acids Research. 2009. 37(12).
-
(2009)
Nucleic Acids Research
, vol.37
, Issue.12
-
-
Malentacchi, F.1
Forni, G.2
Vinci, S.3
Orlando, C.4
-
23
-
-
84884238332
-
High-resolution melting-based quantitative analysis of RASSF1 methylation in breast cancer
-
Stuopelyte K, Daniunaite K, Laurinaviciene A, Ostapenko V, Jarmalaite S. High-resolution melting-based quantitative analysis of RASSF1 methylation in breast cancer. Medicina-Lithuania. 2013;49(2):78-83.
-
(2013)
Medicina-Lithuania
, vol.49
, Issue.2
, pp. 78-83
-
-
Stuopelyte, K.1
Daniunaite, K.2
Laurinaviciene, A.3
Ostapenko, V.4
Jarmalaite, S.5
-
24
-
-
84903525876
-
Quantitative high-resolution melting PCR analysis for monitoring of fermentation microbiota in sourdough
-
Lin XB, Gänzle MG. Quantitative high-resolution melting PCR analysis for monitoring of fermentation microbiota in sourdough. Int J Food Microbiol. 2014;186:42-8.
-
(2014)
Int J Food Microbiol
, vol.186
, pp. 42-48
-
-
Lin, X.B.1
Gänzle, M.G.2
-
25
-
-
3242742969
-
Closed-tube genotyping with unlabeled oligonucleotide probes and a saturating DNA dye
-
Zhou LM, Myers AN, Vandersteen JG, Wang L, Wittwer CT. Closed-tube genotyping with unlabeled oligonucleotide probes and a saturating DNA dye. Clin Chem. 2004;50(8):1328-35.
-
(2004)
Clin Chem
, vol.50
, Issue.8
, pp. 1328-1335
-
-
Zhou, L.M.1
Myers, A.N.2
Vandersteen, J.G.3
Wang, L.4
Wittwer, C.T.5
-
26
-
-
18244395323
-
Genetic mapping of the black tiger shrimp Penaeus monodon with amplified fragment length polymorphism
-
Wilson K, Li YT, Whan V, Lehnert S, Byrne K, Moore S, Pongsomboon S, Tassanakajon A, Rosenberg G, Ballment E et al: Genetic mapping of the black tiger shrimp Penaeus monodon with amplified fragment length polymorphism. Aquaculture. 2002;204(3-4):297-309.
-
(2002)
Aquaculture
, vol.204
, Issue.3-4
, pp. 297-309
-
-
Wilson, K.1
Li, Y.T.2
Whan, V.3
Lehnert, S.4
Byrne, K.5
Moore, S.6
Pongsomboon, S.7
Tassanakajon, A.8
Rosenberg, G.9
Ballment, E.10
-
27
-
-
76249119436
-
Construction of a high-resolution genetic linkage map and comparative genome analysis for the reef-building coral Acropora millepora
-
Wang S, Zhang LL, Meyer E, Matz MV. Construction of a high-resolution genetic linkage map and comparative genome analysis for the reef-building coral Acropora millepora. Genome Biology. 2009. 10(11).
-
(2009)
Genome Biology
, vol.10
, Issue.11
-
-
Wang, S.1
Zhang, L.L.2
Meyer, E.3
Matz, M.V.4
-
28
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl MW. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Research. 2001. 29(9).
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.9
-
-
Pfaffl, M.W.1
-
29
-
-
45549101581
-
Base-pair neutral homozygotes can be discriminated by calibrated high-resolution melting of small amplicons
-
Gundry CN, Dobrowolski SF, Martin YR, Robbins TC, Nay LM, Boyd N, Coyne T, Wall MD, Wittwer CT, Teng DHF: Base-pair neutral homozygotes can be discriminated by calibrated high-resolution melting of small amplicons. Nucleic Acids Res. 2008;36(10):3401-8.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.10
, pp. 3401-3408
-
-
Gundry, C.N.1
Dobrowolski, S.F.2
Martin, Y.R.3
Robbins, T.C.4
Nay, L.M.5
Boyd, N.6
Coyne, T.7
Wall, M.D.8
Wittwer, C.T.9
Teng, D.H.F.10
-
30
-
-
81855224754
-
Historical and contemporary factors shape the population genetic structure of the broadcast spawning coral, Acropora millepora, on the Great Barrier Reef
-
van Oppen MJH, Peplow LM, Kininmonth S, Berkelmans R. Historical and contemporary factors shape the population genetic structure of the broadcast spawning coral, Acropora millepora, on the Great Barrier Reef. Mol Ecol. 2011;20(23):4899-914.
-
(2011)
Mol Ecol
, vol.20
, Issue.23
, pp. 4899-4914
-
-
Oppen, M.J.H.1
Peplow, L.M.2
Kininmonth, S.3
Berkelmans, R.4
-
31
-
-
58949096374
-
Assessing statistical power of SNPs for population structure and conservation studies
-
Morin PA, Martien KK, Taylor BL. Assessing statistical power of SNPs for population structure and conservation studies. Mol Ecol Resour. 2009;9(1):66-73.
-
(2009)
Mol Ecol Resour
, vol.9
, Issue.1
, pp. 66-73
-
-
Morin, P.A.1
Martien, K.K.2
Taylor, B.L.3
-
32
-
-
79951759855
-
Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges
-
Helyar SJ, Hemmer-Hansen J, Bekkevold D, Taylor MI, Ogden R, Limborg MT, Cariani A, Maes GE, Diopere E, Carvalho GR et al: Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges. Mol Ecol Resour. 2011;11:123-36.
-
(2011)
Mol Ecol Resour
, vol.11
, pp. 123-136
-
-
Helyar, S.J.1
Hemmer-Hansen, J.2
Bekkevold, D.3
Taylor, M.I.4
Ogden, R.5
Limborg, M.T.6
Cariani, A.7
Maes, G.E.8
Diopere, E.9
Carvalho, G.R.10
-
33
-
-
84886235499
-
Disentangling the effects of geographic and ecological isolation on genetic differentiation
-
Bradburd GS, Ralph PL, Coop GM. Disentangling the effects of geographic and ecological isolation on genetic differentiation. Evolution. 2013;67(11):3258-73.
-
(2013)
Evolution
, vol.67
, Issue.11
, pp. 3258-3273
-
-
Bradburd, G.S.1
Ralph, P.L.2
Coop, G.M.3
-
34
-
-
58149347836
-
A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective
-
Foll M, Gaggiotti O. A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics. 2008;180(2):977-93.
-
(2008)
Genetics
, vol.180
, Issue.2
, pp. 977-993
-
-
Foll, M.1
Gaggiotti, O.2
-
35
-
-
0038359432
-
High-resolution genotyping by amplicon melting analysis using LCGreen
-
Wittwer CT, Reed GH, Gundry CN, Vandersteen JG, Pryor RJ. High-resolution genotyping by amplicon melting analysis using LCGreen. Clin Chem. 2003;49(6):853-60.
-
(2003)
Clin Chem
, vol.49
, Issue.6
, pp. 853-860
-
-
Wittwer, C.T.1
Reed, G.H.2
Gundry, C.N.3
Vandersteen, J.G.4
Pryor, R.J.5
-
36
-
-
3042651880
-
Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons
-
Liew M, Pryor R, Palais R, Meadows C, Erali M, Lyon E, Wittwer C: Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons. Clin Chem. 2004;50(7):1156-64.
-
(2004)
Clin Chem
, vol.50
, Issue.7
, pp. 1156-1164
-
-
Liew, M.1
Pryor, R.2
Palais, R.3
Meadows, C.4
Erali, M.5
Lyon, E.6
Wittwer, C.7
-
37
-
-
84867660686
-
A closed-tube methylation-sensitive high resolution melting assay (MS-HRMA) for the semi-quantitative determination of CST6 promoter methylation in clinical samples
-
Dimitrakopoulos L, Vorkas PA, Georgoulias V, Lianidou ES. A closed-tube methylation-sensitive high resolution melting assay (MS-HRMA) for the semi-quantitative determination of CST6 promoter methylation in clinical samples. Bmc Cancer. 2012. 12.
-
(2012)
Bmc Cancer
, vol.12
-
-
Dimitrakopoulos, L.1
Vorkas, P.A.2
Georgoulias, V.3
Lianidou, E.S.4
-
38
-
-
84879822630
-
Fish scales and SNP chips: SNP genotyping and allele frequency estimation in individual and pooled DNA from historical samples of Atlantic salmon (Salmo salar)
-
Johnston SE, Lindqvist M, Niemela E, Orell P, Erkinaro J, Kent MP, Lien S, Vaha JP, Vasemagi A, Primmer CR. Fish scales and SNP chips: SNP genotyping and allele frequency estimation in individual and pooled DNA from historical samples of Atlantic salmon (Salmo salar). Bmc Genomics. 2013. 14.
-
(2013)
Bmc Genomics
, vol.14
-
-
Johnston, S.E.1
Lindqvist, M.2
Niemela, E.3
Orell, P.4
Erkinaro, J.5
Kent, M.P.6
Lien, S.7
Vaha, J.P.8
Vasemagi, A.9
Primmer, C.R.10
-
39
-
-
0036244765
-
Rapid SNP allele frequency determination in genomic DNA pools by Pyrosequencing™
-
Neve B, Froquel P, Corset L, Vaillant E, Vatin V, Boutin P. Rapid SNP allele frequency determination in genomic DNA pools by Pyrosequencing™. Biotechniques. 2002;32:1138-42.
-
(2002)
Biotechniques
, vol.32
, pp. 1138-1142
-
-
Neve, B.1
Froquel, P.2
Corset, L.3
Vaillant, E.4
Vatin, V.5
Boutin, P.6
-
40
-
-
83255175577
-
Accuracy in Copy Number Calling by qPCR and PRT: A Matter of DNA
-
Fernandez-Jimenez N, Castellanos-Rubio A, Plaza-Izurieta L, Gutierrez G, Irastorza I, Castano L, Vitoria JC, Bilbao JR. Accuracy in Copy Number Calling by qPCR and PRT: A Matter of DNA. Plos One. 2011, 6(12).
-
(2011)
Plos One
, vol.6
, Issue.12
-
-
Fernandez-Jimenez, N.1
Castellanos-Rubio, A.2
Plaza-Izurieta, L.3
Gutierrez, G.4
Irastorza, I.5
Castano, L.6
Vitoria, J.C.7
Bilbao, J.R.8
-
41
-
-
0036590014
-
Estimation of single nucleotide polymorphism allele frequency in DNA pools by using Pyrosequencing
-
Gruber JD, Colligan PB, Wolford JK. Estimation of single nucleotide polymorphism allele frequency in DNA pools by using Pyrosequencing. Hum Genet. 2002;110(5):395-401.
-
(2002)
Hum Genet
, vol.110
, Issue.5
, pp. 395-401
-
-
Gruber, J.D.1
Colligan, P.B.2
Wolford, J.K.3
|